LOC110496485 (LOC106561242)


Basic Information

Item Value
gene id LOC110496485
gene name LOC106561242
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76266403 ~ 76272163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955859.1
atatgcctgtctgagtgtttgtgtgtgtgtgtaggagatgAACACTGTGGAGAAGTTCAACACTAGTGCCATCCTGACCGTGAATATCTTGGACGGAGATGACCAGTACCCACAATTCCTGCCGTGCATGCCCCCCTCTAATGACCAATCGAATCGTGTCTGCAGCAACCCTGTCTACACGGTTAACATCACAGAAGGCGAACAGGACGTTCTTCTGGACTTCTCTCCTGGGCCGATCAATgctgtggatggagacagaggccTCAACTCACCTCTCAGCTATAGCATTCTGtcagGGGCTGATAATGGGCGTTTTGTGATGGATGAGGTGACAGGGGAGGTGCGTCTGATGAAAGAAGTAGAGAACAGACTACTGACACCCACACTACGCCTACGGGtcatggCGTACCAGAGGAATGACCCTAGGAAGTACTCAGTTGCCACAGTGGTGATCCGTGTTGTGGCTGTCAACCGCTTTCCTCCCCAGTTTGGTCGGGCCGAATACCGTGGTTTTGTCACTGAAGGCAACAGCCCTGCCTCACTGGTCAACACTTACGGAAACACCgtgctgctgctacagatacaGGACAGGGACTTCTCTGATGGGATTAATCCCAAGATGCACTACTCCCTGAGGTCCTCGTCCAATCACACAGAGTTTTACCACATCACACAGGAGGGGCTTCTGATCGCCAGGACCAATCAGCTACGGCCATCACAGAAACACAGTCTGAAGGTAGTGGCTGTGGATCTGGAGTCAGGTGACATGGCCACGGCTCTCATAAAGGTGGAGGTGCTGTATGAAGGACAAATAGTCCCTCAGGGCCCATTGGGGGACGGGCGTCTCCATGGTAGCTGTGCAGTAGGCAAGGCTATGGGTGTGGTCATCCTGGGGCTGACTCTGTTAGGCTGCGCTCTGTATGCACTGCAGCATGTCCTCCGGACATACAGAGGACTGAAGGACCCAGAGGACAGGGGCTGTATTGCACAGGGAAAACACCCCAATGTGAGATTACAATGGTTCCAACTgGTGAGTCACAGTAGCCACATGCCAGTCCTTGATGAGGTGAAGTTCAAAAAGGAGGGTCTAagcacctccacctccacctccaagcTACTGGGCGGTCAGAGCATTTACACACCTGCAGACTCGGACCCTTCTCCATTCAACGCTTTACCCATAGCTACACCCTCAACAACCTACATCCAGCCTATACTAGCCAACTCCACCCATACACCTGCTACAACCATCACACCTGAACTACTCAAGACATCCACTCAACTCCTGGGCAACTCCAGCTCTAGTACACCCCCACACCCATCACCTACACCTACCATGGATCAGACAGACTCGCCTTTAGCTACACACCCCTCCCCTGTTGCAGATCCAATAGGTACACACACTCAGATAGAAGAGACACCTACCTCACCTAACCAtcagcaggtacacacaccttTACCTCCTCCCACTCCGATCAACTCACCCCCTCACCCCACACCCCCTCCTACCTCACCTACCACACCTCTCCCTTTCTCACCTACTCCAGGCCCGGTATACAATCCTGAATGTACAGGATATAATCACACACCTTTACTTACTCCCCCCTGTCCAGAGCAGGACAGGGTAGGGACACCCCCACCTAAACCCACCCCAGGGCAAACACATACCCCTGTACTGACCATCACCTGCCCAGAGCAGGTAGGACAACCAGGGTACCCTGAGGAGCGCAGACCCTCCACCCACAGCCCTGAGACAGCCTCCATCGGTGATGATGACTGCTTCCTGGGGGATGAAGAGGCCACCAggaacagtgatgatgatgaggatgaagagctGGTGAGACTCTATTCTCACATACAGCCCACATTCCTGATAACAGACTATGACAATGACATCACGACTGAGATCCCTGccagtggtggagaggaggaggggactggGAAGAGcgaaggagtggagagagagagggtttggaTGGAGGGAAACAAGGGAGGggccgggagagacagggatgatATGGAAGGAAAGGGGGGTAAATTAGAGAGCGAAGGGGAGAGTTTGAAACAGGGGAGTCCATCATTTCAACCCTGTGATACAGAGCAGGAAGTATCAGTGGGCCAATCAAAGGAGTGATAAACAGTAACCCAGCAACACTCTCTAGTCACTGAGGCCAAACATTTAAGAACACTCTGAAACACgcttgcacaaacacacacagacacacacacacgtacactgaTGATATTAGAACACCCTAGACTTGCCTCAAGCAAGTGTAGGtgaaacacaacacaactggcCATGTGTCTGAGATATAGGCCACACTCCTCTTGTAAGGCCTTTGACTTGAGTCTTTTGTGTTACTGTGTTTTTGTTGATGTTCTTATTTTGTTCTAAAATGGTTCAAGGGACTCCTGGACACTGTGTGTAGGCCTACTTCTGTCCTCCCCTTTGCCCATTCTTATTTAGTTTTTACAAGAAACACCCCTGTGATAAAATGTTACCTACTTCATTGCTAGCCATGAACTTCATGCTTCTCACATAGTTCCAATGTCCACAACACAGGATGTGGAATGATGGTCACGAGAAATTGCTTCAgcaaatatttttgttgtttggATTGTGTGTTCTTCTACTGTATTTCTGTGTAGCGTGATGTAAAATATGATGACCAGAATTTTCAGGTTACATCaactgtctcagtctgtctctacagtatatatcaGTAAAGCCATCATGTGACTGAA

Function

NR:

description
PREDICTED: cadherin-related family member 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955859.1 True 2748 mRNA 0.50 9 76266403 76272163

Neighbor

gene id symbol gene type direction distance location
LOC110496459 LOC106561246 coding upstream 84848 76167573 ~ 76181555 (+)
lmf2a lmf2 coding upstream 199724 76053982 ~ 76066679 (+)
c2cd5 LOC106561251 coding upstream 213260 75993882 ~ 76053143 (+)
LOC110496319 b4galnt3 coding upstream 283797 75939769 ~ 75982606 (+)
LOC110496313 fkbp4 coding upstream 330406 75915637 ~ 75935997 (+)
cd9a LOC106561241 coding downstream 1349 76273512 ~ 76293411 (+)
LOC110496527 sephs1 coding downstream 117366 76389529 ~ 76398538 (+)
LOC100135907 LOC100135907 coding downstream 259256 76531419 ~ 76537667 (+)
mapk8ip2 arsa coding downstream 266513 76538676 ~ 76714965 (+)
LOC110502025 LOC106573403 coding downstream 591286 76863449 ~ 77160850 (+)
G185376 kcp non-coding upstream 62367 76203256 ~ 76204036 (+)
G185367 NA non-coding upstream 78533 76187575 ~ 76187870 (+)
G185352 ppp6r2 non-coding upstream 115524 76150535 ~ 76150879 (+)
G185326 NA non-coding upstream 161979 76104123 ~ 76104424 (+)
G185228 NA non-coding upstream 282002 75984050 ~ 75984401 (+)
G185424 NA non-coding downstream 28172 76300335 ~ 76300615 (+)
G185431 NA non-coding downstream 36791 76308954 ~ 76310593 (+)
G185450 NA non-coding downstream 71829 76343992 ~ 76344405 (+)
G185457 NA non-coding downstream 78866 76351029 ~ 76351362 (+)
G185459 NA non-coding downstream 80926 76353089 ~ 76353307 (+)
LOC110496136 LOC106561223 other upstream 1178996 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 1379903 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1552289 74660359 ~ 74732682 (+)
G183361 NA other upstream 1731377 74529649 ~ 74535026 (+)
G185462 chkb other downstream 161654 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 262215 76534378 ~ 76606975 (+)
G185718 NA other downstream 558250 76830413 ~ 76832500 (+)
LOC110496763 dynlrb2 other downstream 1504964 77777066 ~ 77780795 (+)

Expression


Co-expression Network