cd9a (LOC106561241)


Basic Information

Item Value
gene id cd9a
gene name LOC106561241
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76273512 ~ 76293411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955869.1
GAAGCGATACAGTGAGAGTGAGACATTCAGAGAAaaagagcaggacaggacagaccgACAACCGCTTGGTCTCGCTCTGGGGTGGACCGCTACACGCGCACGAGACGCGGCAGAGCAGCGGCAGAGAAAGACTCAGCGGAGAACGGATTCCTCTGTGTACTGTACACCATAATAATTGTTAGTATTAAAATTGTCGTTTCGCGGGTTCGTTATTAATAACCGTTTAGcgggtagagtagaggagaactgTGCCGCTGTAACTAGAGTCTCTATGGCCGCTCTATCAGGAAGTGAGATGTGCGTCAAATACCTGATGTTCGCTTTCAACCTAATTTTCTGGctTGCAGGTACAGGAGTGCTGGCtatagggttgtggttgaggtttGACCCAAAGACCAGAGGGCTGTTTGAAGGAGCAGAATCTCCCCATGTCTTCTTCACAGgtGTACATATCCTCATAATTGCAGGGTCATTAATGATGGTTGTTGGGTTCTTGGGATGCTGTGGAGCGATTCAGGAGTCACCGTGTATGCTGGGGCTGttcttcttcttcctcctcatcaTATTCGCCATCGAGGTCGCCGCTGGAATCTGGGGGTTCTCCAACCAAAGCAAGGTGGTTGATGACATCACTCAGTTCTACTTGGAGACATATCAGAACTACAAGAACACTTCACAGgacacactgagagagacactCCGTCTCATACAGACTGGGTTGGACTGCTGCGGACCAACAGGTTCCTTTGAGGACTTTGCCAAAGACACCTGTCCCCCAAGAGATGGGCTGGACAGCCTCATCACCAAGAGCTGTCCTGATGCTATAGATGAAGTGTTTGACTCCAAGCTGCACATCATAGGAGGAGTGGGCATCGCTATTGGAGTCATcttgGTGTTTGGGATGATCTTCAGCATGCTGCTCTGCTGTGCCATTAGGAAGTCACGGGAGATCGTCTGATGATGTTATCATTACCATGACGATGCCTTTTAATGTTGCATGATGTCATTCCTAGTCACATGACTTTTGTTTACTTGTTGAGAAAGGTCGGCCAATGAGTACTTTAGATCCCCTAACCTCTGTAACAAGGATCTGTACACCTGGTGATCCAGGGGTTTAGCCTGAGGACGGTGCTGCGCAGAATCACCCTGTATCCTAAACATCTACTCATGAAGTGATCTAGGTTAGCAAATATGTGCAGTTCCTTTCTCAGGCTGATCCTCTCTAACATGGAATCTGTCCAGTGCTAAGGTCGACACTCCTAAATCATCATGGTGATGTCACTGTTCACTGATTGGCCCTGTGAGAAACTGGTTCAGGAAGTGAAATAAACATAACACATTTGTGATTTATGATGAATTAAGAGATCTATGAATAGTAGTCTAGAGGTGTCATAAACAAATGTTTTTGTAATATGAACAGACTTTCAATTACCACAACTGCTCAATGATTTAAATTAAACTCTTGATGAAATAATGTCATGACAATGTAAGCAACATGTATTCTATTAATGATTGTAATAATATTGTATTGTGATCACATTTCTACCAAAATAACATCTGAAGGACCAGGGGCGGTCCTAAGACAACTCCCTATAGCAAAGCCACTCAATCTATACCATTCCTTAGCAAGAACCAATTAAATCAGCACATTGTGACAAGTTCCCAATGATATTGCAGGCTGTGGTCTGTGGTGAACGTGGTTCTAAGTGTTATAGAGGAGCAGCCTGGTCGCTCCAGTAGAGTACAAGAACCCCTCtttctcttgatctctctctctctccctctcacactctctctccgtactctctttctctacccaaTTTGAAAACGCCTTGAAGTCTCTGACTCTTTTTATAAAGTTGATTTTTATTTGTGACCAAGTTTTTGGTGAGTTGTAGTCAGTTTTACAGTATATTTAGATCTCTGTTAGATTACAGTGACTTTTATAACATCCATGCCATTTCACACTGGTCTGGTTGGTTGATGCACCAAAACAAATGAGCCAAATAAACTGTAACCTCTGAACCTAA
>XM_036955873.1
TTTCTCTGTCTATCGCTCTTTGCTCtctttatctcctctctctttgtctctctcactctctgtgagGCTGTCTAGGGAAATAGGAGAGAAGTGTTCtgctctgttacagacagagatcACGTTAGTAACATGGCAGTGTTCGGAGGGATCAGGTGTGTGAAGTACATCATGTTTATCTTCAACGTCTTCTTCTGGctTGCAGGTACAGGAGTGCTGGCtatagggttgtggttgaggtttGACCCAAAGACCAGAGGGCTGTTTGAAGGAGCAGAATCTCCCCATGTCTTCTTCACAGgtGTACATATCCTCATAATTGCAGGGTCATTAATGATGGTTGTTGGGTTCTTGGGATGCTGTGGAGCGATTCAGGAGTCACCGTGTATGCTGGGGCTGttcttcttcttcctcctcatcaTATTCGCCATCGAGGTCGCCGCTGGAATCTGGGGGTTCTCCAACCAAAGCAAGGTGGTTGATGACATCACTCAGTTCTACTTGGAGACATATCAGAACTACAAGAACACTTCACAGgacacactgagagagacactCCGTCTCATACAGACTGGGTTGGACTGCTGCGGACCAACAGGTTCCTTTGAGGACTTTGCCAAAGACACCTGTCCCCCAAGAGATGGGCTGGACAGCCTCATCACCAAGAGCTGTCCTGATGCTATAGATGAAGTGTTTGACTCCAAGCTGCACATCATAGGAGGAGTGGGCATCGCTATTGGAGTCATcttgGTGTTTGGGATGATCTTCAGCATGCTGCTCTGCTGTGCCATTAGGAAGTCACGGGAGATCGTCTGATGATGTTATCATTACCATGACGATGCCTTTTAATGTTGCATGATGTCATTCCTAGTCACATGACTTTTGTTTACTTGTTGAGAAAGGTCGGCCAATGAGTACTTTAGATCCCCTAACCTCTGTAACAAGGATCTGTACACCTGGTGATCCAGGGGTTTAGCCTGAGGACGGTGCTGCGCAGAATCACCCTGTATCCTAAACATCTACTCATGAAGTGATCTAGGTTAGCAAATATGTGCAGTTCCTTTCTCAGGCTGATCCTCTCTAACATGGAATCTGTCCAGTGCTAAGGTCGACACTCCTAAATCATCATGGTGATGTCACTGTTCACTGATTGGCCCTGTGAGAAACTGGTTCAGGAAGTGAAATAAACATAACACATTTGTGATTTATGATGAATTAAGAGATCTATGAATAGTAGTCTAGAGGTGTCATAAACAAATGTTTTTGTAATATGAACAGACTTTCAATTACCACAACTGCTCAATGATTTAAATTAAACTCTTGATGAAATAATGTCATGACAATGTAAGCAACATGTATTCTATTAATGATTGTAATAATATTGTATTGTGATCACATTTCTACCAAAATAACATCTGAAGGACCAGGGGCGGTCCTAAGACAACTCCCTATAGCAAAGCCACTCAATCTATACCATTCCTTAGCAAGAACCAATTAAATCAGCACATTGTGACAAGTTCCCAATGATATTGCAGGCTGTGGTCTGTGGTGAACGTGGTTCTAAGTGTTATAGAGGAGCAGCCTGGTCGCTCCAGTAGAGTACAAGAACCCCTCtttctcttgatctctctctctctccctctcacactctctctccgtactctctttctctacccaaTTTGAAAACGCCTTGAAGTCTCTGACTCTTTTTATAAAGTTGATTTTTATTTGTGACCAAGTTTTTGGTGAGTTGTAGTCAGTTTTACAGTATATTTAGATCTCTGTTAGATTACAGTGACTTTTATAACATCCATGCCATTTCACACTGGTCTGGTTGGTTGATGCACCAAAACAAATGAGCCAAATAAACTGTAACCTCTGAACCTAA

Function

NR:

description
CD9 antigen-like isoform X2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955869.1 False 2030 mRNA 0.44 8 76273512 76293411
XM_036955873.1 True 1885 mRNA 0.43 8 76276402 76293411

Neighbor

gene id symbol gene type direction distance location
LOC110496485 LOC106561242 coding upstream 1349 76266403 ~ 76272163 (+)
LOC110496459 LOC106561246 coding upstream 91957 76167573 ~ 76181555 (+)
lmf2a lmf2 coding upstream 206833 76053982 ~ 76066679 (+)
c2cd5 LOC106561251 coding upstream 220369 75993882 ~ 76053143 (+)
LOC110496319 b4galnt3 coding upstream 290906 75939769 ~ 75982606 (+)
LOC110496527 sephs1 coding downstream 96118 76389529 ~ 76398538 (+)
LOC100135907 LOC100135907 coding downstream 238008 76531419 ~ 76537667 (+)
mapk8ip2 arsa coding downstream 245265 76538676 ~ 76714965 (+)
LOC110502025 LOC106573403 coding downstream 570038 76863449 ~ 77160850 (+)
LOC110496661 LOC106561266 coding downstream 1001676 77295087 ~ 77387938 (+)
G185376 kcp non-coding upstream 69476 76203256 ~ 76204036 (+)
G185367 NA non-coding upstream 85642 76187575 ~ 76187870 (+)
G185352 ppp6r2 non-coding upstream 122633 76150535 ~ 76150879 (+)
G185326 NA non-coding upstream 169088 76104123 ~ 76104424 (+)
G185228 NA non-coding upstream 289111 75984050 ~ 75984401 (+)
G185424 NA non-coding downstream 6924 76300335 ~ 76300615 (+)
G185431 NA non-coding downstream 15543 76308954 ~ 76310593 (+)
G185450 NA non-coding downstream 50581 76343992 ~ 76344405 (+)
G185457 NA non-coding downstream 57618 76351029 ~ 76351362 (+)
G185459 NA non-coding downstream 59678 76353089 ~ 76353307 (+)
LOC110496136 LOC106561223 other upstream 1186105 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 1387012 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1559398 74660359 ~ 74732682 (+)
G183361 NA other upstream 1738486 74529649 ~ 74535026 (+)
G185462 chkb other downstream 140406 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 240967 76534378 ~ 76606975 (+)
G185718 NA other downstream 537002 76830413 ~ 76832500 (+)
LOC110496763 dynlrb2 other downstream 1483716 77777066 ~ 77780795 (+)

Expression


Co-expression Network