prpf18 (prpf18)


Basic Information

Item Value
gene id prpf18
gene name prpf18
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76365671 ~ 76379828 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572465.2
AGGAAATCTTATTCACGTCCGGGTCAGATTGTTTCCAGCATTTTCCCAAACAGCTGATCCGGTCTACATATTTGAACTGTAAAGACTAATGAAATAACGACATATTTGATAATTAATATGGATTTCTTAAGAGCTGAAATCGTGAGGAAGAGAAAACTCATTGAAGACAAAGATCTTATTGATGATTCAAAGAAATACTTCAAACGAGCCGATCTTGCCCGAAAAGAAGAAGATGAGTATTTCGAAAGATGTGGCTACAAGGTTCAGAAAGAGGCACCTGAGAGACAGatggagaagaaagaggagaaagcaGATCCCTCCACCTCGTCCAATAGCACTTTAGAGCTGGAGCTGACTGAGGAGAAGCTGCCAATGTCGCTCTCTCGGCAGGAGGTGATCCGGCGGCTGAGGGAGCGAGGGGAACCGGTGCGTCTGTTTGCAGAGTCAGACTACGAGGCCTTCCAGAGGCTCAGGAAGATTGAGATTCTCGCTCCGGAAGTCAACAAGGGTTTGAGGAACGACCTGAAGGCAGCCATGGATAAGATTGATGCACAGTACCTGAATGAGATCGTAGGGGGCACTGGGGAGCCGGGTGAGGTGGACACACAATTCGACCTAAGAGTACACGAGGCAGACACAACCATCGAGGAGCTGGAGGCCCTGGGTAAATCTCTGGGAACGGGAGATGACAATGGGGACCAGGATGTCATCGACAAAGTGCTTAGGTTCCTGCTGGGAGTCTGGGCGAAGGACCTGAACGGTCGAGAGGACCACGTGAAGCGCAGTGTCCAGGGCAAGCTGGCCAGCGCCACCCAGAAACAGACTGAGTCCTACCTCAAACCTCTATTCCGGAAACTACGCAAGAAGAGTTTGCCAGCAGACATCAAAGAATCAATCACAGACATCATTAAATTCATGCTGCAGAGAGAATATGTAAAGGCAAACGATGCATACCTGCAGATGGCCATTGGTAATGCCCCCTGGCCCATCGGGGTGACCATGGTGGGCATCCACGCCCGTACGGGGCGAGAGAAGATCTTCTCCAAACACGTGGCCCACGTCCTCAACGACGAGACCCAGAGAAAATACATCCAGGGACTAAAAAGGTTGATGACTATCTGCCAGAAACACTTCTCCACAGACCCCTCAAAGTGCGTGGAGTACAATGCCCTGTAGTACACTGACTGTCTACACCTGTGGTTACCAAGCCTTGTCTTAGAGTCCTGGGGTgcgcaggcttttgttccaaccTAGTGCTACAGCACCTAATTCAATTGACTATGGTCTTAATGATCATAAAATACGTTGAATCAGGTGCGCTAGTGTTGGGTTGGAAGGAAAGCATACCTGTATACTTTGTAGTCTTACAGGATCAGGATTGGTATCCACTGGTTGGTTACACGTCTGTGGAAGTCGCTACATACCTGTCAATGGAGATCCAGCTGTTCATGTATATTTGGAGGCTAAATTTTTGCCACTGTTTACTGttttggctttttttttttagggtgtaCAGGTTACTCAAATGAACGAACATGCCGTGTAAATAGCCCTTCTAAGATTAGTCTTTCTCCAGTGTGCTAGTTCTATATCTTTGTAAGAATAGCCATGATGTGTAAGTTTTATTATGCAAAGCTTTGAAAAAAGAAGCTTTAAATTCAAGAATGAGAAAACAGCAGTTGAAACCTGTCAAAGTATACATCTCTGTGAATGGTAAACTGTTCTTATTAATGCAATACATATTTCTAAATTCA
>XM_021572474.2
TCACGTTGGAGGAAATCTTATTCACGTCCGGGTCAGATTGTTTCCAGCATTTTCCCAAACAGCTGATCCGGTCTACATATTTGAACTGTAAAGACTAATGAAATAACGACATATTTGATAATTAATATGGATTTCTTAAGAGCTGAAATCGTGAGGAAGAGAAAACTCATTGAAGACAAAGATCTTATTGATGATTCAAAGAAATACTTCAAACGAGCCGATCTTGCCCGAAAAGAAGAAGATGAGTATTTCGAAAGATGTGGCTACAAGatggagaagaaagaggagaaagcaGATCCCTCCACCTCGTCCAATAGCACTTTAGAGCTGGAGCTGACTGAGGAGAAGCTGCCAATGTCGCTCTCTCGGCAGGAGGTGATCCGGCGGCTGAGGGAGCGAGGGGAACCGGTGCGTCTGTTTGCAGAGTCAGACTACGAGGCCTTCCAGAGGCTCAGGAAGATTGAGATTCTCGCTCCGGAAGTCAACAAGGGTTTGAGGAACGACCTGAAGGCAGCCATGGATAAGATTGATGCACAGTACCTGAATGAGATCGTAGGGGGCACTGGGGAGCCGGGTGAGGTGGACACACAATTCGACCTAAGAGTACACGAGGCAGACACAACCATCGAGGAGCTGGAGGCCCTGGGTAAATCTCTGGGAACGGGAGATGACAATGGGGACCAGGATGTCATCGACAAAGTGCTTAGGTTCCTGCTGGGAGTCTGGGCGAAGGACCTGAACGGTCGAGAGGACCACGTGAAGCGCAGTGTCCAGGGCAAGCTGGCCAGCGCCACCCAGAAACAGACTGAGTCCTACCTCAAACCTCTATTCCGGAAACTACGCAAGAAGAGTTTGCCAGCAGACATCAAAGAATCAATCACAGACATCATTAAATTCATGCTGCAGAGAGAATATGTAAAGGCAAACGATGCATACCTGCAGATGGCCATTGGTAATGCCCCCTGGCCCATCGGGGTGACCATGGTGGGCATCCACGCCCGTACGGGGCGAGAGAAGATCTTCTCCAAACACGTGGCCCACGTCCTCAACGACGAGACCCAGAGAAAATACATCCAGGGACTAAAAAGGTTGATGACTATCTGCCAGAAACACTTCTCCACAGACCCCTCAAAGTGCGTGGAGTACAATGCCCTGTAGTACACTGACTGTCTACACCTGTGGTTACCAAGCCTTGTCTTAGAGTCCTGGGGTgcgcaggcttttgttccaaccTAGTGCTACAGCACCTAATTCAATTGACTATGGTCTTAATGATCATAAAATACGTTGAATCAGGTGCGCTAGTGTTGGGTTGGAAGGAAAGCATACCTGTATACTTTGTAGTCTTACAGGATCAGGATTGGTATCCACTGGTTGGTTACACGTCTGTGGAAGTCGCTACATACCTGTCAATGGAGATCCAGCTGTTCATGTATATTTGGAGGCTAAATTTTTGCCACTGTTTACTGttttggctttttttttttagggtgtaCAGGTTACTCAAATGAACGAACATGCCGTGTAAATAGCCCTTCTAAGATTAGTCTTTCTCCAGTGTGCTAGTTCTATATCTTTGTAAGAATAGCCATGATGTGTAAGTTTTATTATGCAAAGCTTTGAAAAAAGAAGCTTTAAATTCAAGAATGAGAAAACAGCAGTTGAAACCTGTCAAAGTATACATCTCTGTGAATGGTAAACTGTTCTTATTAATGCAATACATATTTCTAAATTCA

Function

symbol description
prpf18 Predicted to be involved in generation of catalytic spliceosome for second transesterification step and nuclear retention of unspliced pre-mRNA at the site of transcription. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nuclear speck. Predicted to be part of U2-type post-spliceosomal complex; U4/U6 x U5 tri-snRNP complex; and U5 snRNP. Orthologous to human PRPF18 (pre-mRNA processing factor 18).

NR:

description
pre-mRNA-splicing factor 18 isoform X2

GO: NA

KEGG:

id description
K12817 PRPF18, PRP18; pre-mRNA-splicing factor 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572465.2 False 1754 mRNA 0.46 11 76365671 76379819
XM_021572474.2 True 1736 mRNA 0.46 10 76365671 76379828

Neighbor

gene id symbol gene type direction distance location
si:dkey-234i14.6 LOC106561240 coding downstream 23837 76321757 ~ 76341834 (-)
LOC110496478 kcp coding downstream 134096 76188320 ~ 76231575 (-)
LOC110496468 LOC106561244 coding downstream 152752 76209339 ~ 76212919 (-)
ppp6r2b ppp6r2 coding downstream 197515 76135363 ~ 76168156 (-)
adm2b adm2 coding downstream 265762 76093170 ~ 76099909 (-)
LOC100329197 LOC100329197 coding upstream 20392 76400220 ~ 76410715 (-)
chkb chkb coding upstream 36374 76416202 ~ 76434654 (-)
LOC110502016 LOC106561263 coding upstream 77895 76457723 ~ 76516834 (-)
LOC110496606 LOC106561236 coding upstream 185071 76564899 ~ 76570311 (-)
LOC110496614 LOC106561236 coding upstream 204954 76584782 ~ 76590246 (-)
G186241 NA non-coding downstream 13967 76351489 ~ 76351704 (-)
G186240 NA non-coding downstream 15910 76349466 ~ 76349761 (-)
G186237 NA non-coding downstream 19914 76345430 ~ 76345757 (-)
G186235 NA non-coding downstream 21440 76344021 ~ 76344231 (-)
G186234 NA non-coding downstream 23170 76342251 ~ 76342501 (-)
G186198 sephs1 non-coding upstream 9640 76389468 ~ 76397620 (-)
G186277 NA non-coding upstream 71703 76451531 ~ 76451733 (-)
G186306 NA non-coding upstream 138019 76517847 ~ 76518254 (-)
G186309 NA non-coding upstream 142017 76521845 ~ 76522089 (-)
G186353 NA non-coding upstream 228816 76608644 ~ 76657511 (-)
G186197 LOC106561241 other downstream 72279 76273524 ~ 76293392 (-)
tnni1c LOC106561253 other downstream 376098 75985156 ~ 75989573 (-)
G186002 NA other downstream 487611 75877359 ~ 75878060 (-)
LOC110496628 rabl2b other upstream 790135 77166074 ~ 77171661 (-)
G187490 NA other upstream 1090565 77470393 ~ 77471675 (-)
G187579 LOC106561332 other upstream 1323071 77702899 ~ 77703489 (-)
G188257 NA other upstream 2236754 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 2843402 79223230 ~ 79224998 (-)

Expression


Co-expression Network