LOC100135907 (LOC100135907)


Basic Information

Item Value
gene id LOC100135907
gene name LOC100135907
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76531419 ~ 76537667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990350.1
GCGTTCACTTAATCTACCCCCATGTGAAAGTAACATGACTTCAGGTGTGGAAAAATCTATTTTTCCATTCAATAAATACATCATCTCAAATTATTGCAACCAGAAGTTTCTCTTTAAGAATGAATGAAAGCATCCAGTGAACATTGCTGATCAATTCTTATTGTGAAGCCATGGCGATGAAGTGGAGTGTAGTTTGTCTCGTGGCAGTGGCCATGCttggctgtctgtgtgttgctCAGAATTGGCCACCCTTCAGTAAACCAGTGCAGCAACCCTTCAGACCCAATCGTCAGCCACCTCAGCAGCCTCAGCAGCCTCAGCAACCACCGTATCAGAAACCCAGGATCCCACCAAAAGACCAAACCCAGGCCAAGCAGAAGTTCGAGACACCATTGGATTGGACCTATCCTCTGGACCCAAAGCCAGAGCCCAAGATTATTGGGAGCTCAGAGGCGAGAACCCCTGTGGCTGCCAATTCAGTGAGGGCTGAGTGCAGGGAGAACATGGTCCACGTGGAAGCGAAGCATGACCTGCTGGGGATCGGCCAGTTGATCCAGCTAGAAGACCTCACTTTGGGAGACTGCCCTATGACTGGATTTGACAATATCAACCAGGTGCTCATCTTTGAGTCTCCGCTGCAGTCATGTGGCAGCCAGCTAAGGATGACTACCAACTCCCTCATCTACATCTTCACTCTATATTACAAACCCAAACCTCTGGCAAACACCCCCCTCATCAGGACAAATGACGCGATGATCAATATTGAGTGCCACTATCCAAGgaaACACAATGTGAGCAGCCTGGCCCTGATCCCAACCTGGACCCCTTTCTCCGCTGCTAAGTATGCAGAGGAACTCCTGTACTTCTCCATGAGGCTCATGACTGCTGACTGGCAGTATGAGAGGGCCGGTAACATGTACGTGTTGGGTGATATGGTGAACATCGAGGCCTCTGTCATGCAGTACTTCCACGTCCCCCTGCGTATCTTTGTGGACAGCTGTGTGGCCACCCTGGAACCCAACATAAACGCCAATCCCAGATACGCCTTCATTGAGAATCATGGGTGTCTGATCGACGCCAAAATGACAGGTTCCCACTCCCAGTTCATGCCTCGTTCCGCAGACTACAAGCTGTATTTCCAGGTGGAGGCTTTCAGGTTCCAGAGCCAGAAGGGGAGTGACCCAATTAATCCGCAGAAAACAAAGATACCTTTTCAGGCTGCTTCAGATTATCCCGCTACGCTCGACATGATCTTCATTACCTGTCACCTGAAGGCAACCACAATCGCTTTCCCCATTGATTTTGAGTACAAGGCCTGCTCCTACATTAATACGTGGAGGGAGGCTGGTGGGAATGATGGAGTGTGTGGCTGCTGTGACTCCACCTGTAGCAACAGGAAGGGACGCGATACCACTAAGCATCAAAAACCAGCAAATATATGGGAGGGAGATGTTCAGCTTGGTCCCATCTTTATCTCGGAAAAGGTTGCGCAATAAATTCAGACCCTGCCATTGGCATGCCCATTGAAATAAACAAGTTGATGGTT
>NM_001124274.1
ATCAATTCTTATTGTGAAGCCATGGCGATGAAGTGGAGTGTAGTTTGTCTCGTGGCAGTGGCCATGCttggctgtctgtgtgttgctCAGAATTGGCCACCCTTCAGTAAACCAGTGCAGCAACCCTTCAGACCCAATCGTCAGCCACCTCAGCAGCCTCAGCAGCCTCAGCAACCACCGTATCAGAAACCCAGGATCCCACCAAAAGACCAAACCCAGGCCAAGCAGAAGTTCGAGACACCATTGGATTGGACCTATCCTCTGGACCCAAAGCCAGAGCCCAAGATTATTGGGAGCTCAGAGGCGAGAACCCCTGTGGCTGCCAATTCAGTGAGGGCTGAGTGCAGGGAGAACATGGTCCACGTGGAAGCGAAGCATGACCTGCTGGGGATCGGCCAGTTGATCCAGCTAGAAGACCTCACTTTGGGAGACTGCCCTATGACTGGATTTGACAATATCAACCAGGTGCTCATCTTTGAGTCTCCGCTGCAGTCATGTGGCAGCCAGCTAAGGATGACTACCAACTCCCTCATCTACATCTTCACTCTATATTACAAACCCAAACCTCTGGCAAACACCCCCCTCATCAGGACAAATGACGCGATGATCAATATTGAGTGCCACTATCCAAGgaaACACAATGTGAGCAGCCTGGCCCTGATCCCAACCTGGACCCCTTTCTCCGCTGCTAAGTATGCAGAGGAACTCCTGTACTTCTCCATGAGGCTCATGACTGCTGACTGGCAGTATGAGAGGGCCGGTAACATGTACGTGTTGGGTGATATGGTGAACATCGAGGCCTCTGTCATGCAGTACTTCCACGTCCCCCTGCGTATCTTTGTGGACAGCTGTGTGGCCACCCTGGAACCCAACATAAACGCCAATCCCAGATACGCCTTCATTGAGAATCATGGGTGTCTGATCGACGCCAAAATGACAGGTTCCCACTCCCAGTTCATGCCTCGTTCCGCAGACTACAAGCTGTATTTCCAGGTGGAGGCTTTCAGGTTCCAGAGCCAGAAGGGGAGTGACCCAATTAATCCGCAGAAAACAAAGATACCTTTTCAGGCTGCTTCAGATTATCCCGCTACGCTCGACATGATCTTCATTACCTGTCACCTGAAGGCAACCACAATCGCTTTCCCCATTGATTTTGAGTACAAGGCCTGCTCCTACATTAATACGTGGAGGGAGGCTGGTGGGAATGATGGAGTGTGTGGCTGCTGTGACTCCACCTGTAGCAACAGGAAGGGACGCGATACCACTAAGCATCAAAAACCAGCAAATATATGGGAGGGAGATGTTCAGCTTGGTCCCATCTTTATCTCGGAAAAGGTTGCGCAATAAATTCAGACCCTGCCATTGGCATGCCCATTGAAATAAACAAGTTGATGGTT

Function

NR:

description
choriogenin L

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990350.1 False 1546 mRNA 0.49 9 76531419 76537667
NM_001124274.1 True 1397 mRNA 0.51 8 76532095 76537667

Neighbor

gene id symbol gene type direction distance location
LOC110496527 sephs1 coding upstream 132881 76389529 ~ 76398538 (+)
cd9a LOC106561241 coding upstream 238008 76273512 ~ 76293411 (+)
LOC110496485 LOC106561242 coding upstream 259256 76266403 ~ 76272163 (+)
LOC110496459 LOC106561246 coding upstream 349864 76167573 ~ 76181555 (+)
lmf2a lmf2 coding upstream 464740 76053982 ~ 76066679 (+)
mapk8ip2 arsa coding downstream 1009 76538676 ~ 76714965 (+)
LOC110502025 LOC106573403 coding downstream 325782 76863449 ~ 77160850 (+)
LOC110496661 LOC106561266 coding downstream 757420 77295087 ~ 77387938 (+)
nfat5a LOC106561332 coding downstream 1159559 77697226 ~ 77716788 (+)
LOC110496763 dynlrb2 coding downstream 1239399 77777066 ~ 77780795 (+)
G185461 NA non-coding upstream 113065 76416215 ~ 76418354 (+)
G185463 NA non-coding upstream 130654 76354349 ~ 76400765 (+)
G185459 NA non-coding upstream 178112 76353089 ~ 76353307 (+)
G185457 NA non-coding upstream 180057 76351029 ~ 76351362 (+)
G185450 NA non-coding upstream 187014 76343992 ~ 76344405 (+)
G185624 arsa non-coding downstream 142941 76680608 ~ 76681061 (+)
G185717 NA non-coding downstream 290482 76828149 ~ 76833657 (+)
G185783 NA non-coding downstream 390251 76927918 ~ 76932510 (+)
G185695 NA non-coding downstream 624348 77162015 ~ 77165608 (+)
G185462 chkb other upstream 96804 76433817 ~ 76434615 (+)
LOC110496136 LOC106561223 other upstream 1444012 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 1644919 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1817305 74660359 ~ 74732682 (+)
G185718 NA other downstream 292746 76830413 ~ 76832500 (+)
LOC110502077 LOC106561326 other downstream 1510220 78047373 ~ 78066844 (+)
G187260 NA other downstream 1599846 78137513 ~ 78177583 (+)

Expression


Co-expression Network