LOC110496606 (LOC106561236)


Basic Information

Item Value
gene id LOC110496606
gene name LOC106561236
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76564899 ~ 76570311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572601.2
TGCACATATGTGTGTTTGGTACAGTATATAAGATCAGTCCTGACCCAAGCTAAGGTGTATCCACCACTAGTTGTGATTTCAGGAGTGACCATGAAGTGTCTGGTTATTGTGCTGGTATGTGCTGTGCTCGCTGAGGGAATCCACAGGATCCCTCTGGTGAAGCATAAGTCAATCCGTGAGAGAATGATGGAGAACGGAGAACGCCTGCCCTACCAAGACCCCGCTCTCAAATACTTTCCTGACGAGTTCGCTGGCTCCGCCACCATGTACATCAACAACTACGCCGACACCACCTACTATGGAGCCATCACCATCGGTACTCCCCCCCAGTCCTTCCAGGTGTTGTTTGACACTGGCTCTGCCAACCTGTGGGTTGACTCTGTACTCTGCAACACTCAGGCCTGCAACACCCACACAAAGTTCAACCCCCAGCAGTCGTCCACCTACTCAGCTAATGGGCAAACTTTCTACCTGCCCTACGGAGCTGGCAGTCTCAGTGGAGTCTTCGGATATGACACCGTCAACGTCGGTGgtattgtcatcaacaaccaggAGATTGGTCTGAGTACTGACGAGCCAGGTCAGAATTTTGTTGTGGCCCAGTTTGATGGTATCCTTGGCCTGTCCTACCCTTCCATCTCAGCTGGACAAGAGACTCCCGTCATGGACAACATGATGTCTCAGAACCTTCTACAGGCTAACATATTTGCATTCTACCTGACCAGCGACGGCCAGCAGGGCAGTGAGCTGTCGTTCGGAGGAGTGGACAACACCAAGTATCAGGGTCAGATCTACTGGACTCCCGTCACCTCCCAGACATACTGGCAGATCGGCATCCAAGGGTTCCAGATCAACGGTCAGGAGACAGGGTGGTGTGGGCAGGGCTGCCAGGCCATCGTGGATACAGGCACCTCCATGCTGACTGCACCCAAACAGATCATGGGAACGCTGATGCAGTCCATTGGAGCCCAGCAGGACCAGTACGGACAGTACACAGTGAACTGTAACCAGATCAACAGCCTGCCTACTCTCACCTTCACCATCAATGGAGTCAACTTCCCCCTGCCGCCATCTGCATACATTCAGCAGAACAACCAGGTCTGTTCCGTGGGGATCACCCCCACCTACCTGCCGTCCCAGAACGGACAGCCCCTGTGGATTTTGGGAGATGTATTCCTCATGCAGTACTACTCCGTCTACGACCGCACAAACAACCAAGTGGGCTTTGCCACCGTAGCCTAAACCTGACCAACATGACCATGACCGCAAACCAATGCAGACACCGACCGTTCTTAGAAGTCTACCACCCCAAACCTCACACAGAATCTATTCCACCTCTGACCATTCTAGAACATCAATCACCAATGGCAACTATTCTGAATCACTCATAACAACCACTCTGGTTATTTTAGAACACATATTACCCATGGCAACCACTCTGCTCATTTATATTACACATATTACCCATGGCAACCACTGTGGGTCAGTTTGGCTTTGGTCCAGTGTGGTTAAAGCAAGCATCGACATCATTGGGTTAAAGCTGTGGTCTTTGTTAGATGACATCTGCTAATATATTCAGTTGAGCTGTAAGGTTGTTTCCTTTCTACTCTGGCATTGCAACGACAACCTCCTAGTTCCCAGACAACATCGGATGTGAACACAGGTTCAGCCATGTTGCTGATTGCATCATGATGCTGAGTGAAAAAGTAAAGGACTTACAGAAACACAGTGAAATATGAAAATATAATTTTGGACACTTAAATGCATATCATCTCAAGACTGGATGTATTTGGTGTTTGTTTAGCTTCCATGTAGACTGAATAAACTATTGAAGTGCACAATAA

Function

NR:

description
gastricsin-like

GO: NA

KEGG:

id description
K01377 PGC; gastricsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572601.2 True 1844 mRNA 0.49 9 76564899 76570311

Neighbor

gene id symbol gene type direction distance location
LOC110502016 LOC106561263 coding downstream 48065 76457723 ~ 76516834 (-)
chkb chkb coding downstream 130245 76416202 ~ 76434654 (-)
LOC100329197 LOC100329197 coding downstream 154184 76400220 ~ 76410715 (-)
prpf18 prpf18 coding downstream 185071 76365671 ~ 76379828 (-)
si:dkey-234i14.6 LOC106561240 coding downstream 223065 76321757 ~ 76341834 (-)
LOC110496614 LOC106561236 coding upstream 14471 76584782 ~ 76590246 (-)
LOC110496598 LOC106561235 coding upstream 31740 76602051 ~ 76608058 (-)
arsa arsa coding upstream 105743 76676054 ~ 76690444 (-)
LOC110496628 rabl2b coding upstream 596514 77166074 ~ 77171661 (-)
LOC100136242 odf3 coding upstream 601463 77171774 ~ 77176796 (-)
G186309 NA non-coding downstream 42810 76521845 ~ 76522089 (-)
G186306 NA non-coding downstream 46645 76517847 ~ 76518254 (-)
G186277 NA non-coding downstream 113166 76451531 ~ 76451733 (-)
G186198 sephs1 non-coding downstream 167279 76389468 ~ 76397620 (-)
G186241 NA non-coding downstream 213195 76351489 ~ 76351704 (-)
G186353 NA non-coding upstream 38333 76608644 ~ 76657511 (-)
G186491 NA non-coding upstream 254167 76824478 ~ 76825291 (-)
G186697 NA non-coding upstream 612318 77182629 ~ 77182852 (-)
G186706 NA non-coding upstream 621907 77192218 ~ 77192523 (-)
G186197 LOC106561241 other downstream 271507 76273524 ~ 76293392 (-)
adm2b adm2 other downstream 465049 76093170 ~ 76099909 (-)
tnni1c LOC106561253 other downstream 575326 75985156 ~ 75989573 (-)
G186002 NA other downstream 686839 75877359 ~ 75878060 (-)
G187490 NA other upstream 900082 77470393 ~ 77471675 (-)
G187579 LOC106561332 other upstream 1132588 77702899 ~ 77703489 (-)
G188257 NA other upstream 2046271 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 2652919 79223230 ~ 79224998 (-)

Expression


Co-expression Network