LOC110496598 (LOC106561235)


Basic Information

Item Value
gene id LOC110496598
gene name LOC106561235
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76602051 ~ 76608058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572587.2
ATTTCAGGAGTGACCATGAAGTGTCTGGTTATTGTGCTGGTATGTGCTGTGCTCGCTGAGGGAATCCACAGGATCCCTCTGGTGAAGCATAAGTCAATCCGTGAGAGAATGATGGAGAAAGGAGAACGCCTGCCCTACCAAGACCCCGCTCTCAAATACTTTCCTGACGAGTTCGCTGGCTCCGCCACCATGTACATCAACAACTACGCCGACACCACCTACTATGGAGCCATCACCATCGGTACTCCCCCCCAGTCCTTCCAGGTGTTGTTTGACACTGGCTCTGCCAACCTGTGGGTTGACTCTGTACTCTGCAACACTCAGGCCTGCAACAGCCACACAAAGTTCAACCCCCAGCAGTCGTCCACCTACTCAGCTAATGGGGAAACTTTCTACCTGCCCTACGGAACTGGCAGTCTCAGTGGAGTCTTCGGATATGACACCGTCAACGTCGGTGGTATTTTCATCAACCACCAGGAGATTGGTCTGAGTACTGACGAGCCAGGTCAGACCTTTGTTGTGGCCCAGTTTGATGGTATCCTTGGCATGTCCTACCCTTCCATCTCAGCCGGACAAGAGACTCCCTTCATGGACAACATCATGTCACTGAACCTTCTAAAGGCTAACATATTTGCATTCTACCTGACCAGGGACGGCCAGCAGGGCAGTGAGCTGTCGTTCGGAGAAGTGGACAACACCAAGTATCAGGGTCAGATCTACTGGACCCCCGTCACCGCCCAGACATACTGGCAGATCGGCATCCAAGGATTCCAGATCAACGGTCAGGAGACAGGGTGGTGTGGGCAGGGCTGCCAGGCCATCGTGGATACAGGCACCTCCATGCTGACTGCACCCAAACAGATCATGGGAACGCTGATGCAGTCCATTGGAGCCCAGCAGGACCAGTATGGACAGTACACAGTGAACTGTAACCAGATCAACAGCCTGCCTACTCTCACCTTCACCATCAATGGAGTCAACTTCCCCCTGCCGCCATCTGCATACATTCAGCAGAACAACCAGGGTGGGTACCAGTTCTGCTTCGTGGGGATCATCCCCACCTACCTGCCGTCCCAGAACGGACAGCCCCTGTGGATTTTGGGAGATGTATTCCTCAGGGAGTACTACTCCGTCTACGACCGCACAAACAACCAAGTGGGCTTTGCCACCGCAGCCTAAATCTGACCAACATGACCATGACCGCAAACCCAACACAGACACCGACCGTTCTTAGAAGTCTACCACCCCAAACCTCACACAGAATCTATTCCACCTCTGGCCATTCTAGAACATCAATCACCAATGGCAACTATTCTGAATCACTCATAACAACCACTCTGGTTATTTTAGAACACATATTACCCATGGCAACCACTCTGGTCATTATAATACACATATTACCCATGGCAACCACTGTGGGTCAGTTTGGCTTTGGTCCAGTGTGGTTAAAGCAAGCATCGACATCATTGGGTTAAAGCTGTGGTCTTTGTTAGATGACATCTGCTAATATATTCAGTTGAGCTGTAAGGTTGTTTCCTTTCTACTCTGGCATTGCAACGACAACCTCCTAGTTCCCAGACAACATCGGATGTGAACACAGGTTCAGCCATGTTGCTGATTGCATCATGATGCTGAGTGAAAAAGTAAATGACTTACAGAAACACAGTGAA

Function

NR:

description
gastricsin-like

GO: NA

KEGG:

id description
K01377 PGC; gastricsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572587.2 True 1670 mRNA 0.51 9 76602051 76608058

Neighbor

gene id symbol gene type direction distance location
LOC110496614 LOC106561236 coding downstream 11805 76584782 ~ 76590246 (-)
LOC110496606 LOC106561236 coding downstream 31740 76564899 ~ 76570311 (-)
LOC110502016 LOC106561263 coding downstream 85217 76457723 ~ 76516834 (-)
chkb chkb coding downstream 167397 76416202 ~ 76434654 (-)
LOC100329197 LOC100329197 coding downstream 191336 76400220 ~ 76410715 (-)
arsa arsa coding upstream 67996 76676054 ~ 76690444 (-)
LOC110496628 rabl2b coding upstream 558767 77166074 ~ 77171661 (-)
LOC100136242 odf3 coding upstream 563716 77171774 ~ 77176796 (-)
wwox wwox coding upstream 778411 77386469 ~ 77682973 (-)
LOC110496686 NA coding upstream 1107640 77715698 ~ 77745029 (-)
G186309 NA non-coding downstream 79962 76521845 ~ 76522089 (-)
G186306 NA non-coding downstream 83797 76517847 ~ 76518254 (-)
G186277 NA non-coding downstream 150318 76451531 ~ 76451733 (-)
G186198 sephs1 non-coding downstream 204431 76389468 ~ 76397620 (-)
G186241 NA non-coding downstream 250347 76351489 ~ 76351704 (-)
G186353 NA non-coding upstream 586 76608644 ~ 76657511 (-)
G186491 NA non-coding upstream 216420 76824478 ~ 76825291 (-)
G186697 NA non-coding upstream 574571 77182629 ~ 77182852 (-)
G186706 NA non-coding upstream 584160 77192218 ~ 77192523 (-)
si:dkey-234i14.6 LOC106561240 other downstream 278161 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 308659 76273524 ~ 76293392 (-)
adm2b adm2 other downstream 502201 76093170 ~ 76099909 (-)
tnni1c LOC106561253 other downstream 612478 75985156 ~ 75989573 (-)
G186002 NA other downstream 723991 75877359 ~ 75878060 (-)
G187490 NA other upstream 862335 77470393 ~ 77471675 (-)
G187579 LOC106561332 other upstream 1094841 77702899 ~ 77703489 (-)
G188257 NA other upstream 2008524 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 2615172 79223230 ~ 79224998 (-)

Expression


Co-expression Network