XLOC_020698


Basic Information

Item Value
gene id XLOC_020698
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1497890 ~ 1525556 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042250
tgggttttggccagatttggtagcaatacatgaacaaaggaaaattaagacctgtttaaaaaaagatttaagacctacagcacagtatttcagcaaatttaagactttttcagaCCTAAAATtaggattttgagatttaagacattttaagacactgcagaaaccctgtaattGGAGGAATGtaggaataataaacagggggctaataattctgacttcaactgtatatgtggtAAATCTTAATAGCAGATAAAGAATTACAGTTGATAAATCTGTGTAAGCCTGGATAAGTTTATTGACTGTATCATGAAGCAAAATAATAAAGGCCTGAAATACTAAAACATTCGGATAGGGTGACCATATGTCCTCTTTAGGATTTCTAAATGTCAGCCTTTGCTTTTTAGAGTCCTTTTATGTTTAACTGGTTTCTTTCCAGCGTGAATCCTCTGGTGGCGTTTCAGATTTTCAGCTGTAGTATAACTCTTCCCACAAATAAAGCACACATGCTCTTTCataccagtgtggatcttctgatgttttCTTAAATGTGACTTTCGTttaaaactcttctcacactcAGAGCATGAATACGGCTTCTCCTCTTTATGAACACTAAGATGGAGCTTCAAATCTGCAGTCCTCAAAAATATCCTGTCgcattgatcacatttgtgttttttctctccaatgtggatcatcatgtgtcgaCTAAGGTCTGACGATTGTCTGTAACTCCTCCCACAATGAACACACTTGTGGTTTTTCTCTCCTGTGTGGATCagcatgtgtcgattaaggtctGACAATTGCATGAAACCGTTCCCACACTGAGCGCATCTGAAtcgtttctctccagtgtgaatcctctcatgtgttgtCAGATTTTCTGACTCACTGAATGTTCgctcgcagtgtgaacacttgtaatgTTTCTTTCCAGTGTAAGTCACCTGGTGTCTTCTCAGATAATGTGACTGGCTGAATCTCTTGTGGCAGtctgaacacttgtacggtttctctccagtgtgagtcctctgaTGTTGCCTTAAACCGTGTGGATAATTGTAACTCTTCCCGCACAAAGAGCATAGAAAAGGTTTAGTCTTTGAATGAACATTAAAGCAAATTTTCATGTCTTCATTCAGCTCTGAAAATCAAGTAAACAAAAAAGTTACATTCTAAGAGAGAAATGTCAAGTCAGgatgctttcactttcacttcatcAAAACAAAAGCTACATTTTAAGAGAAACATGTCAAGTAGGgat
>TCONS_00042251
tgggttttggccagatttggtagcaatacatgaacaaaggaaaattaagacctgtttaaaaaaagatttaagacctacagcacagtatttcagcaaatttaagactttttcagaCCTAAAATtaggattttgagatttaagacattttaagacactgcagaaaccctgtaattGGAGGAATGtaggaataataaacagggggctaataattctgacttcaactgtatatgtggtAAATCTTAATAGCAGATAAAGAATTACAGTTGATAAATCTGTGTAAGCCTGGATAAGTTTATTGACTGTATCATGAAGCAAAATAATAAAGGCCTGAAATACTAAAACATTCGGATAGGGTGACCATATGTCCTCTTTAGGATTTCTAAATGTCAGCCTTTGCTTTTTAGAGTCCTTTTATGTTTAACTGGTTTCTTTCCAGCGTGAATCCTCTGGTGGCGTTTCAGATTTTCAGCTGTAGTATAACTCTTCCCACAAATAAAGCACACATGCTCTTTCataccagtgtggatcttctgatgttttCTTAAATGTGACTTTCGTttaaaactcttctcacactcAGAGCATGAATACGGCTTCTCCTCTTTATGAACACTAAGATGGAGCTTCAAATCTGCAGTCCTCAAAAATATCCTGTCgcattgatcacatttgtgttttttctctccaatgtggatcatcatgtgtcgaCTAAGGTCTGACGATTGTCTGTAACTCCTCCCACAATGAACACACTTGTGGTTTTTCTCTCCTGTGTGGATCagcatgtgtcgattaaggtctGACAATTGCATGAAACCGTTCCCACACTGAGCGCATCTGAAtcgtttctctccagtgtgaatcctctcatgtgttgtCAGATTTTCTGACTCACTGAATGTTCgctcgcagtgtgaacacttgtaatgTTTCTTTCCAGTGTAAGTCACCTGGTGTCTTCTCAGATAATGTGACTGGCTGAATCTCTTGTGGCAGtctgaacacttgtacggtttctctccagtgtgagtcctctgaTGTTGCCTTAAACCGTGTGGATAATTGTAACTCTTCCCGCACAAAGAGCATAGAAAAGGTTTAGTCTTTGAATGAACATTAAAGCAAATTTTCATGTCTTCATTCAGCTCTGAAAATCAAGTAAACAAAAAAGTTACATTCTAAGAGAGAAATGTCAAGTCAGgatgctttcactttcacttcatcAAAACAAAAGCTACattttaagaGAAAAGTGTCAAGTAGGG

Function

GO:

id name namespace
GO:1900449 regulation of glutamate receptor signaling pathway biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042250 False 1267 lncRNA 0.38 2 1497890 1525556
TCONS_00042251 True 1265 lncRNA 0.38 2 1523732 1525556

Neighbor

gene id symbol gene type direction distance location
XLOC_020695 NA coding downstream 40546 1440678 ~ 1457344 (-)
XLOC_020696 NA coding downstream 44859 1449858 ~ 1453031 (-)
XLOC_020694 NA coding downstream 132549 1363340 ~ 1365341 (-)
XLOC_020693 BX322657.4 coding downstream 138034 1320991 ~ 1359856 (-)
XLOC_020692 NA coding downstream 181117 1315728 ~ 1316773 (-)
XLOC_020699 NA coding upstream 80109 1605665 ~ 1608245 (-)
XLOC_020700 NA coding upstream 157101 1682657 ~ 1809866 (-)
XLOC_020701 NA coding upstream 178134 1703690 ~ 1749740 (-)
XLOC_020702 NA coding upstream 214174 1739730 ~ 1744114 (-)
XLOC_020703 NA coding upstream 231112 1756668 ~ 1759855 (-)
XLOC_020691 NA non-coding downstream 207034 1266991 ~ 1290856 (-)

Expression


Co-expression Network