LOC100136242 (odf3)


Basic Information

Item Value
gene id LOC100136242
gene name odf3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77171774 ~ 77176796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990455.1
TGGAACACCAACCAAACAGACAAACGATCTCCAGACACCAGCACTAACTCACCAGCTCTAAAAAACTAATCAtgtcaggcactgatgtttggGTTGGCTCCTGGAGGCCCCACAAGCCCAGAGGCCCCATTGCTGCACTCTACAGCAGCCCTGGACCCAAGTATGCCCTGCCTGGAGCGACAGGTCTGAACTACCATGACCCCAGGAAGCTGAAAGCACCGGCATTCAGTTTTGGGACACGCCATCGCCAATTCAGCTCAGACTGCTCCCCCGGGCCAGGGTACTTGGTTCCCTCCAACATCACCAGGATTGGGCGTGACGGGACCCCTGCATACTCCCTCTACAGCCGCCCCAATGACCCCCAGCTGTTCCAAACCCCCGGACCTGGACGCTACTCCCCTGAGAGGTCAGGGAAGTCTGCATATTACTCTGCCCCTGCCTATTCGCTGTCTGCCAGGAGCAAAGGCTTCCGCAACGACCAGACCCCAGGCCCTGCTGCTTACATGCTGCCCTCTGTGTTGGGGCCTGCTACCGTCAACAAAACCTCCGCCCCTAACTTCTCCCTTCGAGGACGCAGCAAGATCGGCAGCTTCCACGAGGACCTGCAGAAGACTCCTGGCCCAGGGACATACAGAGTGGTGGACCCCTGCACCTACAAACACAAACCCCCCCACTACAGCATGACAGGACGCAACAGCATGCCTGGAGACACCACCAGGAAACCAGGCCCTGGAGCTCACCACCCTGAACAGGTGACCTTCACCAGGATCAAACCTCCAAGCTTCTCTTTCGGAATTCGTCATTCTGAGTTCATCGCTCCGCTTATAGTGGACTTGGCGGAATAGGAACCCTTCCCATTCCTCCATTTACCTCATTCCTTCCCAACATCCCTTTTCCTCATCCATACCCCCTTATCTCAGCAATAAATTCAGCAGTATCAAAATGCTCTGCAGTGAAGAAAGTAGTTAATTGTGCCTTATTGTTCTTATGTATTGCCTATCCTGCATGGAGTACAATGATGCTGGAAGACAAGCTAACCTGCTAACCAAGCTAATCCTTGTTGATGATTAAAAACAAAAGTATATTTTTTATATGAAGGCTATGTTTTATCacatcaatttgatttgaataactGAGAAAAACACATCGGCTATCACGCACGCTTGAACGTTATGAATACTTATGTGGGGGGGAAAGGATTAGGCTTGTACTACACAAACACTACTTCACCTGTGGCCTCCCTTCATATTTTGTGTTACTTGTATGCTGCATGAATGCTATGATTTGGGGAACACTTTTCTTTGGCCCAATACTGTTTTAATTTGACCACTTTCAGTATTAAAATTATTCTGAAATACCTAGTATTATATTTTATTGTTCCAATACCAAAGATGTGGTTTGATATAACATTGATCTGACATGATTCTTCTCAAACCATAATGACTTGGCTATGTTCACTCACTTTGATGTTATAACATGTCAAACGTGTACAATTGTGGTGATAAATAACGCTAgtttgaaataaatacattttcaacgAA
>XM_036990464.1
GCGCAGTCACACGGTCAAGACTAATCAtgtcaggcactgatgtttggGTTGGCTCCTGGAGGCCCCACAAGCCCAGAGGCCCCATTGCTGCACTCTACAGCAGCCCTGGACCCAAGTATGCCCTGCCTGGAGCGACAGGTCTGAACTACCATGACCCCAGGAAGCTGAAAGCACCGGCATTCAGTTTTGGGACACGCCATCGCCAATTCAGCTCAGACTGCTCCCCCGGGCCAGGGTACTTGGTTCCCTCCAACATCACCAGGATTGGGCGTGACGGGACCCCTGCATACTCCCTCTACAGCCGCCCCAATGACCCCCAGCTGTTCCAAACCCCCGGACCTGGACGCTACTCCCCTGAGAGGTCAGGGAAGTCTGCATATTACTCTGCCCCTGCCTATTCGCTGTCTGCCAGGAGCAAAGGCTTCCGCAACGACCAGACCCCAGGCCCTGCTGCTTACATGCTGCCCTCTGTGTTGGGGCCTGCTACCGTCAACAAAACCTCCGCCCCTAACTTCTCCCTTCGAGGACGCAGCAAGATCGGCAGCTTCCACGAGGACCTGCAGAAGACTCCTGGCCCAGGGACATACAGAGTGGTGGACCCCTGCACCTACAAACACAAACCCCCCCACTACAGCATGACAGGACGCAACAGCATGCCTGGAGACACCACCAGGAAACCAGGCCCTGGAGCTCACCACCCTGAACAGGTGACCTTCACCAGGATCAAACCTCCAAGCTTCTCTTTCGGAATTCGTCATTCTGAGTTCATCGCTCCGCTTATAGTGGACTTGGCGGAATAGGAACCCTTCCCATTCCTCCATTTACCTCATTCCTTCCCAACATCCCTTTTCCTCATCCATACCCCCTTATCTCAGCAATAAATTCAGCAGTATCAAAATGCTCTGCAGTGAAGAAAGTAGTTAATTGTGCCTTATTGTTCTTATGTATTGCCTATCCTGCATGGAGTACAATGATGCTGGAAGACAAGCTAACCTGCTAACCAAGCTAATCCTTGTTGATGATTAAAAACAAAAGTATATTTTTTATATGAAGGCTATGTTTTATCacatcaatttgatttgaataactGAGAAAAACACATCGGCTATCACGCACGCTTGAACGTTATGAATACTTATGTGGGGGGGAAAGGATTAGGCTTGTACTACACAAACACTACTTCACCTGTGGCCTCCCTTCATATTTTGTGTTACTTGTATGCTGCATGAATGCTATGATTTGGGGAACACTTTTCTTTGGCCCAATACTGTTTTAATTTGACCACTTTCAGTATTAAAATTATTCTGAAATACCTAGTATTATATTTTATTGTTCCAATACCAAAGATGTGGTTTGATATAACATTGATCTGACATGATTCTTCTCAAACCATAATGACTTGGCTATGTTCACTCACTTTGATGTTATAACATGTCAAACGTGTACAATTGTGGTGATAAATAACGCTAgtttgaaataaatacattttcaacgAA
>XM_021617389.2
aaaatacaagtaatgtgattattgtggcagatgtatgtgtgtatttagcacattttatgtttaggttttcaatatatcacaaactgtttctgcatattggttTATATTCACACCGAAAACTGCAGACAAAAATGCTTTCTGCTACTAAGATTagtgaaatgtaggctaaactgacaacggagtgaagggcagaaatctcaactggcaagcaagtcgcagcaatgaacAACGCGAAGGAGGGGAGAATTCAGGCACCtgttgtgattgggagtcccataaaacaacgcacaattggtccagcgtcgtccgggtttggccgtgaTTGTACATACGATgctgttcttaacggacttgcctagttaaataaaggttaaataaaaaataaaaaaaatgttttcttcgAGGAGTATCTACCCCCCGCCCCCACAGACACACCAAGAAACGAAATTATCTCTTTGAACAAGTTCTGACTGCATTGCATTACAGAAAAAAAATGTTGTCCTTCAATTTTGGTAATCGTAAACAGGTTTATTTTCTGCCACATTGTGAATTTAAAGCCAACCTGCCTGTCAAAATAGCGTATCCATGGTAACGTAGTCATAGTGAGCACGAGGACAACCAAAGTCAAACAATCAGAGCTCCCAAGTGTTTCGTCCTAGGGAGCACCCAGTGCGGAGAAGACCAGTGCCGAGAAGACAACGAACTACAATACAGACTAATCAtgtcaggcactgatgtttggGTTGGCTCCTGGAGGCCCCACAAGCCCAGAGGCCCCATTGCTGCACTCTACAGCAGCCCTGGACCCAAGTATGCCCTGCCTGGAGCGACAGGTCTGAACTACCATGACCCCAGGAAGCTGAAAGCACCGGCATTCAGTTTTGGGACACGCCATCGCCAATTCAGCTCAGACTGCTCCCCCGGGCCAGGGTACTTGGTTCCCTCCAACATCACCAGGATTGGGCGTGACGGGACCCCTGCATACTCCCTCTACAGCCGCCCCAATGACCCCCAGCTGTTCCAAACCCCCGGACCTGGACGCTACTCCCCTGAGAGGTCAGGGAAGTCTGCATATTACTCTGCCCCTGCCTATTCGCTGTCTGCCAGGAGCAAAGGCTTCCGCAACGACCAGACCCCAGGCCCTGCTGCTTACATGCTGCCCTCTGTGTTGGGGCCTGCTACCGTCAACAAAACCTCCGCCCCTAACTTCTCCCTTCGAGGACGCAGCAAGATCGGCAGCTTCCACGAGGACCTGCAGAAGACTCCTGGCCCAGGGACATACAGAGTGGTGGACCCCTGCACCTACAAACACAAACCCCCCCACTACAGCATGACAGGACGCAACAGCATGCCTGGAGACACCACCAGGAAACCAGGCCCTGGAGCTCACCACCCTGAACAGGTGACCTTCACCAGGATCAAACCTCCAAGCTTCTCTTTCGGAATTCGTCATTCTGAGTTCATCGCTCCGCTTATAGTGGACTTGGCGGAATAGGAACCCTTCCCATTCCTCCATTTACCTCATTCCTTCCCAACATCCCTTTTCCTCATCCATACCCCCTTATCTCAGCAATAAATTCAGCAGTATCAAAATGCTCTGCAGTGAAGAAAGTAGTTAATTGTGCCTTATTGTTCTTATGTATTGCCTATCCTGCATGGAGTACAATGATGCTGGAAGACAAGCTAACCTGCTAACCAAGCTAATCCTTGTTGATGATTAAAAACAAAAGTATATTTTTTATATGAAGGCTATGTTTTATCacatcaatttgatttgaataactGAGAAAAACACATCGGCTATCACGCACGCTTGAACGTTATGAATACTTATGTGGGGGGGAAAGGATTAGGCTTGTACTACACAAACACTACTTCACCTGTGGCCTCCCTTCATATTTTGTGTTACTTGTATGCTGCATGAATGCTATGATTTGGGGAACACTTTTCTTTGGCCCAATACTGTTTTAATTTGACCACTTTCAGTATTAAAATTATTCTGAAATACCTAGTATTATATTTTATTGTTCCAATACCAAAGATGTGGTTTGATATAACATTGATCTGACATGATTCTTCTCAAACCATAATGACTTGGCTATGTTCACTCACTTTGATGTTATAACATGTCAAACGTGTACAATTGTGGTGATAAATAACGCTAgtttgaaataaatacattttcaacgAA
>XM_036990448.1
TTACCTCTATGCAGAAAGATGACATGTTCAACGGGAAAGTGACCCCGTCAGATAGACAGCAGCCTTAATTATTGCACAGAATCCAGCCTAGTTGATGAGATGCGTTTTTCcagatttaacacttttttttctctgTCTTCTATTGATTTAGTAACCATAATTCTGTCCATCCTGCACAATGGTGAGAACTCCAATCATTTTTGTACGGAATATGATCGAGACATGGAATTTGGGCCATCCAGGCTGAATCAAATCAGACTAATCAtgtcaggcactgatgtttggGTTGGCTCCTGGAGGCCCCACAAGCCCAGAGGCCCCATTGCTGCACTCTACAGCAGCCCTGGACCCAAGTATGCCCTGCCTGGAGCGACAGGTCTGAACTACCATGACCCCAGGAAGCTGAAAGCACCGGCATTCAGTTTTGGGACACGCCATCGCCAATTCAGCTCAGACTGCTCCCCCGGGCCAGGGTACTTGGTTCCCTCCAACATCACCAGGATTGGGCGTGACGGGACCCCTGCATACTCCCTCTACAGCCGCCCCAATGACCCCCAGCTGTTCCAAACCCCCGGACCTGGACGCTACTCCCCTGAGAGGTCAGGGAAGTCTGCATATTACTCTGCCCCTGCCTATTCGCTGTCTGCCAGGAGCAAAGGCTTCCGCAACGACCAGACCCCAGGCCCTGCTGCTTACATGCTGCCCTCTGTGTTGGGGCCTGCTACCGTCAACAAAACCTCCGCCCCTAACTTCTCCCTTCGAGGACGCAGCAAGATCGGCAGCTTCCACGAGGACCTGCAGAAGACTCCTGGCCCAGGGACATACAGAGTGGTGGACCCCTGCACCTACAAACACAAACCCCCCCACTACAGCATGACAGGACGCAACAGCATGCCTGGAGACACCACCAGGAAACCAGGCCCTGGAGCTCACCACCCTGAACAGGTGACCTTCACCAGGATCAAACCTCCAAGCTTCTCTTTCGGAATTCGTCATTCTGAGTTCATCGCTCCGCTTATAGTGGACTTGGCGGAATAGGAACCCTTCCCATTCCTCCATTTACCTCATTCCTTCCCAACATCCCTTTTCCTCATCCATACCCCCTTATCTCAGCAATAAATTCAGCAGTATCAAAATGCTCTGCAGTGAAGAAAGTAGTTAATTGTGCCTTATTGTTCTTATGTATTGCCTATCCTGCATGGAGTACAATGATGCTGGAAGACAAGCTAACCTGCTAACCAAGCTAATCCTTGTTGATGATTAAAAACAAAAGTATATTTTTTATATGAAGGCTATGTTTTATCacatcaatttgatttgaataactGAGAAAAACACATCGGCTATCACGCACGCTTGAACGTTATGAATACTTATGTGGGGGGGAAAGGATTAGGCTTGTACTACACAAACACTACTTCACCTGTGGCCTCCCTTCATATTTTGTGTTACTTGTATGCTGCATGAATGCTATGATTTGGGGAACACTTTTCTTTGGCCCAATACTGTTTTAATTTGACCACTTTCAGTATTAAAATTATTCTGAAATACCTAGTATTATATTTTATTGTTCCAATACCAAAGATGTGGTTTGATATAACATTGATCTGACATGATTCTTCTCAAACCATAATGACTTGGCTATGTTCACTCACTTTGATGTTATAACATGTCAAACGTGTACAATTGTGGTGATAAATAACGCTAgtttgaaataaatacattttcaacgAA
>NM_001124506.1
GTATCCATGGTAACGTAGTCATAGTGAGCACGAGGACAACCAAAGTCAAACAATCAGAGCTCCCAAGTGTTTCGTCCTAGGGAGCACCCAGTGCGGAGAAGACCAGTGCCGAGAAGACAACGAACTACAATACAGACTAATCAtgtcaggcactgatgtttggGTTGGCTCCTGGAGGCCCCACAAGCCCAGAGGCCCCATTGCTGCACTCTACAGCAGCCCTGGACCCAAGTATGCCCTGCCTGGAGCGACAGGTCTGAACTACCATGACCCCAGGAAGCTGAAAGCACCGGCATTCAGTTTTGGGACACGCCATCGCCAATTCAGCTCAGACTGCTCCCCCGGGCCAGGGTACTTGGTTCCCTCCAACATCACCAGGATTGGGCGTGACGGGACCCCTGCATACTCCCTCTACAGCCGCCCCAATGACCCCCAGCTGTTCCAAACCCCCGGACCTGGACGCTACTCCCCTGAGAGGTCAGGGAAGTCTGCATATTACTCTGCCCCTGCCTATTCGCTGTCTGCCAGGAGCAAAGGCTTCCGCAACGACCAGACCCCAGGCCCTGCTGCTTACATGCTGCCCTCTGTGTTGGGGCCTGCTACCGTCAACAAAACCTCCGCCCCTAACTTCTCCCTTCGAGGACGCAGCAAGATCGGCAGCTTCCACGAGGACCTGCAGAAGACTCCTGGCCCAGGGACATACAGAGTGGTGGACCCCTGCACCTACAAACACAAACCCCCCCACTACAGCATGACAGGACGCAACAGCATGCCTGGAGACACCACCAGGAAACCAGGCCCTGGAGCTCACCACCCTGAACAGGTGACCTTCACCAGGATCAAACCTCCAAGCTTCTTTCGGAATTCGTCATTCTGAGTTCATCGCTCCGCTTATAGTGGACTTGGCGGAATAGGAACCCTTCCCATTCCTCCATTTACCTCATTCCTTCCCAACATCCCTTTTCCTCATCCATACCCCCTTATCTCAGCAATAAATTCAGCAGTATCAAAATGCTCTGCAGTGA

Function

symbol description
odf3 Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in cytoplasm. Predicted to be active in outer dense fiber.

NR:

description
outer dense fiber of sperm tail protein 3

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990455.1 False 1541 mRNA 0.48 7 77171774 77175074
XM_036990464.1 False 1496 mRNA 0.48 7 77171774 77175482
XM_021617389.2 False 2191 mRNA 0.45 7 77171774 77176290
XM_036990448.1 False 1734 mRNA 0.46 7 77171774 77176796
NM_001124506.1 True 1025 mRNA 0.56 8 77172359 77175711

Neighbor

gene id symbol gene type direction distance location
LOC110496628 rabl2b coding downstream 113 77166074 ~ 77171661 (-)
arsa arsa coding downstream 481330 76676054 ~ 76690444 (-)
LOC110496598 LOC106561235 coding downstream 563716 76602051 ~ 76608058 (-)
LOC110496614 LOC106561236 coding downstream 581528 76584782 ~ 76590246 (-)
LOC110496606 LOC106561236 coding downstream 601463 76564899 ~ 76570311 (-)
wwox wwox coding upstream 209673 77386469 ~ 77682973 (-)
LOC110496686 NA coding upstream 538902 77715698 ~ 77745029 (-)
nudt7 nudt7 coding upstream 568930 77745726 ~ 77749429 (-)
LOC110496739 LOC106561348 coding upstream 575743 77752539 ~ 77759288 (-)
LOC110496728 LOC100194665 coding upstream 583931 77760727 ~ 77764403 (-)
G186491 NA non-coding downstream 346483 76824478 ~ 76825291 (-)
G186353 NA non-coding downstream 514263 76608644 ~ 76657511 (-)
G186309 NA non-coding downstream 649685 76521845 ~ 76522089 (-)
G186306 NA non-coding downstream 653520 76517847 ~ 76518254 (-)
G186697 NA non-coding upstream 5833 77182629 ~ 77182852 (-)
G186706 NA non-coding upstream 15422 77192218 ~ 77192523 (-)
G186713 NA non-coding upstream 19997 77196793 ~ 77197074 (-)
G186719 NA non-coding upstream 29221 77206017 ~ 77206295 (-)
G186735 NA non-coding upstream 43912 77220708 ~ 77220963 (-)
si:dkey-234i14.6 LOC106561240 other downstream 847884 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 878382 76273524 ~ 76293392 (-)
adm2b adm2 other downstream 1071924 76093170 ~ 76099909 (-)
tnni1c LOC106561253 other downstream 1182201 75985156 ~ 75989573 (-)
G187490 NA other upstream 293597 77470393 ~ 77471675 (-)
G187579 LOC106561332 other upstream 526103 77702899 ~ 77703489 (-)
G188257 NA other upstream 1439786 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 2046434 79223230 ~ 79224998 (-)
G189256 NA other upstream 2189053 79365849 ~ 79366569 (-)

Expression


Co-expression Network