LOC110496661 (LOC106561266)


Basic Information

Item Value
gene id LOC110496661
gene name LOC106561266
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77295087 ~ 77387938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572682.2
TTAAAAAAACACTCTCTCCGTCAAGCCTGGGGTGGAGTTGTTTTTCTTTCCTTCTCTACAAGGCATGAATTTGCCTGTGACACGGCACGTGAACCTCCTTCAATTTGGCGCACTAATCCTAAAATAAGGCATGAAGTGTTAAATGTTATAAACACACAGAACTGCGCTCagacaaggagaaagagagggagaaaacggAGGAGAGTGAGACGCACGCGCTGCTCTGGTGCGTCTGTGCAGAGACTGcataaaaagagagaaaaaaataacaaaaaaaacgtGCGCTGCGCAATTAGGCTAGAAACCTTGTGTTTTTTCTCTCCATTTTCTggaagataaaataaataaagaaatcaAGCTGGCTCAGTGCATGTCACAGCAGCCCGCTTTGACAGGTGCTGCTCAGCCCCTTTGGAGGACTGCTTTCAGCAGCAGCAGGATGGCATCAGAACTGGCAATGAGCAACTCCGACCTGCCCACCAGTCCCCTGGCCATGGAATATGTTAATGACTTCGATCTGATGAAGTTTGAAGTGAAAAAGGAGCCGGTGGAGCCGGATCGCAGCATCAGCCAGTGCAGCCGCCTGATCGCCGGGGGATCCTTGTCTTCCACCCCGATGAGCACGCCTTGCAGCTCGGTTCCCCCTTCCCCAAGCTTTTCGGCGCCCAGCCCGGGCTCCGGGAGCGAGCAGAAAGCTCACCTGGAGGATTTCTACTGGATGAGCGGCTACCAACAGCAGCTGAATCCCGAAGCGCTGGGCTTCAGCCCCGAAGACGCGGTAGAGGCGCTGATCAGCAGCAGTCACCATCTCCAGTCCTTCGATGGCTATGCTAGAGGGCAGCAGTTCGCGGGGGTGGCCGGGGCAGGAGGCGGCATGGCCGGGGAGGAGATGGGCTCAGCAGCCGCTGTGGTATCCGCTGTTATCGCTGCAGCGGCAGCGCAGAACGGAGGTccacaccaccatcaccaccaccaccacgccgGGGGACACCACCCCTCCACAGGGGTCCCGTCCAACGCCAGTTCGGCAGGCAGCCACCAGCACATAGGACACCTGGACCTGGACGACCGGTTTTCGGACGACCAGCTGGTGAGCATGTCAGTACGGGAGCTGAACCGACAACTGCGCGGGGTCAGCAAGGAGGAGGTGATCCGACTGAAACAGAAGAGGAGGACCCTAAAGAACAGAGGCTATGCCCAGTCCTGCCGCTACAAGCGGGTCCAGCAGAGACATGTTCTGGAGGGCGAGAAGACGCAGCTGATCCAGCAGGTGGACCACCTCAAGGCGGAGATATCGCGGCTGGCCAGGGAGCGGGACGCATACAAGGACAAGTACGAGAAGCTCATAACCAACGGCTGCAGGGAAAACGGATCCGACAACACCCCCTCGTCCCCAGAGTTTTTCATGACGTCGAGAAAGTTCCTCCATCTGTGATAGTGACCCCTGAACCCTGCACATGACCCTTGACCTGGAGTCTAAGGTAACGTCAGCCATCTCATTCTTTTTCCTCTTCAGTTCACTGCT
>TU211794
CTAAAGAACAGAGGCTATGCCCAGTCCTGCCGCTACAAGCGGGTCCAGCAGAGACATGTTCTGGAGGGCGAGAAGACGCAGCTGATCCAGCAGGTGGACCACCTCAAGGCGGAGATATCGCGGCTGGCCAGGGAGCGGGACGCATACAAGGACAAGTACGAGAAGCTCATAACCAACGGCTGCAGGGAAAACGGATCCGACAACACCCCCTCGTCCCCAGAGTTTTTCATGACGTCGAGAAAGTTCCTCCATCTGTGATAGTGACCCCTGAACCCTGCACATGACCCTTGACCTGGAGTCTAAGAAACCATGACAGAGGAATGCTGATATCTTAACATCATTCCGCGGCGCCAGTCGGCCACAAAGCACAACATCCACACATCTCCAAACCACCCAGAAACCAAGCAACAGACCCTGTACAGAAGTCCAGATGGACCCGTCACCCAACACTGCACACTTTCATGACGAGATTATCCCCCGAAACAAATGACAACAAAACTAAACATCCAAGGAAAATACTGAGTTCCTGTTTGATCAACTACTAAAACTCCtcgattctctctttctctatcaccaGTAGCTACATACATAATTGTGACTGAACATTGTGACAAAGATACAGTACCACATTCTACATTACATTTTGTAGAGTATTATAAGTTATAATATGTAGGTTGGAGGTCTAACTGTAGACAGACACTGTAGAGAGGAGAAATGATGATGCGTGAGTTCCCGTTAGCACATAGGCCCAATGCTGTTCCTGTAAATAATGGGCAGTAGAACTGAATAGGGCCTCATATGGAATACAGCTAGTccatctgtatatagccatgacACCATAGCTCTAATATGTACATAGGCATTCAATTATACCTCCTTATTTCTCCTATCCCCCTTCAACCCTCCTACACTAGCGCAATGATACTCACCATATCTCCATACTCAGAcatgtcaaatatatatatacaggaggAAACTGGATACAGAGAGAAGATACACACAGTGTCTGTTGCAGCTGGAAACACACTGGAGTGAGAAACACAGACCCACTTTGGCTGGAATAAGGAACTGGTGAACTCTCCCTGACACAAAGAGGCACACAATAACCCCGGTTTACTTGTATGTGTATTTTACTTCCCTTAATGAAGTGAAAGTTTCAGTTCAATGGTTTGAAAGCTTTCTACAGTCCACTCAATGTACAAATTTTAATTTTCATCcacacttcctccctctccctccattcctgaTTGGCtagtccttcctctctcccccagtcctgaTAGGCTGTTGACAGTCAGTGTGGGCGTGTCAATCAGAGGGCCTGTAGGCCCGTAGGCCTCTCTGAGACCAGGCGCTCGCTTAGCTCCCACAGGCTGGCTGCAGTGACCTGGTCCTCGGCCTGGGGGGAGGGCAGGCAGCGGAAACAGTTGTTGAAGTACATCCCTCCTAGACCCTCCAGCTCCGGAGCTACCGCACAGTACACCGTGGTG
>TU211793
AGGACAAGTACGAGAAGCTCATAACCAACGGCTGCAGGGAAAACGGATCCGACAACACCCCCTCGTCCCCAGAGTTTTTCATGACGTCGAGAAAGTTCCTCCATCTGTGATAGTGACCCCTGAACCCTGCACATGACCCTTGACCTGGAGTCTAAGAAACCATGACAGAGGAATGCTGATATCTTAACATCATTCCGCGGCGCCAGTCGGCCACAAAGCACAACATCCACACATCTCCAAACCACCCAGAAACCAAGCAACAGACCCTGTACAGAAGTCCAGATGGACCCGTCACCCAACACTGCACACTTTCATGACGAGATTATCCCCCGAAACAAATGACAACAAAACTAAACATCCAAGGAAAATACTGAGTTCCTGTTTGATCAACTACTAAAACTCCtcgattctctctttctctatcaccaGTAGCTACATACATAATTGTGACTGAACATTGTGACAAAGATACAGTACCACATTCTACATTACATTTTGTAGAGTATTATAAGTTATAATATGTAGGTTGGAGGTCTAACTGTAGACAGACACTGTAGAGAGGAGAAATGATGATGCGTGAGTTCCCGTTAGCACATAGGCCCAATGCTGTTCCTGTAAATAATGGGCAGTAGAACTGAATAGGGCCTCATATGGAATACAGCTAGTccatctgtatatagccatgacACCATAGCTCTAATATGTACATAGGCATTCAATTATACCTCCTTATTTCTCCTATCCCCCTTCAACCCTCCTACACTAGCGCAATGATACTCACCATATCTCCATACTCAGAcatgtcaaatatatatatacaggaggAAACTGGATACAGAGAGAAGATACACACAGTGTCTGTTGCAGCTGGAAACACACTGGAGTGAGAAACACAGACCCACTTTGGCTGGAATAAGGAACTGGTGAACTCTCCCTGACACAAAGAGGCACACAATAACCCCGGTTTACTTGTATGTGTATTTTACTTCCCTTAATGAAGTGAAAGTTTCAGTTCAATGGTTTGAAAGCTTTCTACAGTCCACTCAATGTACAAATTTTAATTTTCATCcacacttcctccctctccctccattcctgaTTGGCtagtccttcctctctcccccagtcctgaTAGGCTGTTGACAGTCAGTGTGGGCGTGTCAATCAGAGGGCCTGTAGGCCCGTAGGCCTCTCTGAGACCAGGCGCTCGCTTAGCTCCCACAGGCTGGCTGCAGTGACCTGGTCCTCGGCCTGGGGGGAGGGCAGGCAGCGGAAACAGTTGTTGAAGTACATCCCTCCTAGACCCTCCAGCTCCGGAGCTACCGCACAGTACACCGTGGTGGCTGCCCCCTGTTGCTatggagacaaagagacagagggacaacagtcaacatggaggacagagacagagcggcACTGATCAAGATCATCTGTGTGGGAGGAGGGCACAGTCATAGAGAATGACAGAGGCCCTCTTGTCCGCCAAGAGATACACAGGAACTCCAGCCACCCTACAGATCCTGCCAAGACACCTCCACTGGAATACACACACCTGTACTCAGTGACCCTCATCTCTCCTGAT

Function

NR:

description
WW domain-containing oxidoreductase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572682.2 False 1525 mRNA 0.56 2 77295087 77306466
TU211794 False 1490 lncRNA 0.48 3 77296264 77387698
TU211793 True 1582 lncRNA 0.48 3 77296412 77387938

Neighbor

gene id symbol gene type direction distance location
LOC110502025 LOC106573403 coding upstream 135243 76863449 ~ 77160850 (+)
mapk8ip2 arsa coding upstream 621014 76538676 ~ 76714965 (+)
LOC100135907 LOC100135907 coding upstream 757420 76531419 ~ 76537667 (+)
LOC110496527 sephs1 coding upstream 896549 76389529 ~ 76398538 (+)
cd9a LOC106561241 coding upstream 1001676 76273512 ~ 76293411 (+)
nfat5a LOC106561332 coding downstream 390760 77697226 ~ 77716788 (+)
LOC110496763 dynlrb2 coding downstream 470600 77777066 ~ 77780795 (+)
LOC110502056 LOC106561330 coding downstream 532302 77838768 ~ 77882208 (+)
LOC100135906 LOC100135906 coding downstream 657035 77963501 ~ 77969044 (+)
fbxl13 fbxl13 coding downstream 665378 77971844 ~ 78003571 (+)
G186751 NA non-coding upstream 40960 77242039 ~ 77254127 (+)
G186736 NA non-coding upstream 73716 77221119 ~ 77221371 (+)
G186718 NA non-coding upstream 88703 77206087 ~ 77206384 (+)
G186717 NA non-coding upstream 95077 77199728 ~ 77200010 (+)
G186716 NA non-coding upstream 95913 77198969 ~ 77199174 (+)
G186824 NA non-coding downstream 77310 77383776 ~ 77384590 (+)
G186826 NA non-coding downstream 83247 77389713 ~ 77394282 (+)
G186835 NA non-coding downstream 100336 77406802 ~ 77408255 (+)
G186837 NA non-coding downstream 103910 77410376 ~ 77411754 (+)
G186869 NA non-coding downstream 168544 77475010 ~ 77477871 (+)
G185718 NA other upstream 462587 76830413 ~ 76832500 (+)
G185549 LOC106561235 other upstream 688112 76534378 ~ 76606975 (+)
G185462 chkb other upstream 860472 76433817 ~ 76434615 (+)
LOC110496459 LOC106561246 other upstream 1125792 76167573 ~ 76181555 (+)
LOC110502077 LOC106561326 other downstream 741421 78047373 ~ 78066844 (+)
G187260 NA other downstream 831047 78137513 ~ 78177583 (+)
G187320 LOC106561323 other downstream 960823 78267289 ~ 78270045 (+)
LOC110496993 LOC106561317 other downstream 1178358 78467699 ~ 78519071 (+)
G186896 NA non-coding downstream 117474 77505412 ~ 77537308 (+)

Expression


Co-expression Network