LOC110496739 (LOC106561348)


Basic Information

Item Value
gene id LOC110496739
gene name LOC106561348
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77752539 ~ 77759288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956041.1
TCAGACCACTCGTCTTGCTCTGGGGTGAATGGTAATCTGCAGAATGGACGTTTCTGAGTTGTGTCGGAGTGTGGTTTCATAATGACATCAGAGTTGCGGGACGTGATTAATCACTGGGTTTTTACTCCGTTGTCAGATGACATAATTTCAGAATTCACGCAGCTAGTCAGACCAAGTAGGCTATGGAGTCTTAAAAGCGGGTCTGCACCCTATCTCTGTCTCACCCACAAACAGATACCCGATGATGAGAAGGGGTATAAGTTGGACCTCTTCTGTGTCCCCAAACACTATGAGGAGGATTTAGACCAGGTTATCATCCCCCATGGACTGATCATGGACAGgactGAGCGCCTGGCTCGTGATATAGTCCGGGACATGGGGGGACACCATATAGTAGCACTGTGTGTTCTCAAAGGAGGTTATACATTCTTTGCCGACCTGCTGGACTACATCAAGGCCCTAAATCAGAACAGCGATAAGTCTGTCCCGTTGACTGTGGATTTCATTAGGCTAAAGAGCTATTGCAATGACCAGTCTACAAACATTGTCAAAGTTATTGGAGGGGACGAGCTCTCAACTCTAACCGGGAAGAATGTTTTGATAGTTGAGGACATTGTGGAGACTGGGAGGACTATGGAGACACTGCTATCACTGCTGAGTGAATGCAATCCAAAGATGGTCAAAGTCGTCAGCCTTCTGGTCAAGAGAACACCAAGGAGCTCAGGATACAGACCAGACTACATCGGGTTTGAGGTGCCAGATTTGTTTCTGGTGGGATATGCCCTGGACTACAATGAGTACTTCAGAGATCTCAGTCACATCTGTATACTGAACGAGAACGCAAAGGAGAAGTACAAAGTGTGAGCTGAGGCGATAGACAGATGGATGACTAGAGACTAGGACCACTGTGATGATCCTGAGCTTTTTAGGGTTCTGAACCTTATTGTGAACACCTTACCTATTGTGAATTCAGTTTGCAAGATACTATttgagaaaacaaaaatgtattgaatCCATATTTTTGTTCCCCTAGAAGCAATGGGATGAGTTATGTTTTTAAGTAGAGGATTCGTGTAAAGATAGTTATGGGAGTACACTTTTTTTAATTTAGATTtgttattctatattatattggGTCCTTGGATACCTCTCATCTGATTTATGTTAGTAAGGATGGATTTTATGTTGCTTAATACAATCCACAGGATCTCAGGCGACTGtacatatccacagtaaaatctATGTTAGTCAAGTCATGTACTGCATTGTACAAACCAATGATGCTGTTTAACTCATATGCCAAGCCCATGCAAAGACAAGCCTGGAATGTAATGTAACAATTTTGTTTAATAATGGCAATGTTTTCATTCACCAAGGACATTAACAATCCTATTTTAATATTGCTGTCAATCTTaaatgtgtgtgttagagagatgCCTTCCATGGATTGACTTTAAAGAAAAGAGAAATCCGCACACTACTCttgttttttttcatttttattgaaGCATTTAAGGCCAAGAggcagtcggaagtttacatacacttatgttggagtcatgaaaacatgtttttcaagatcatgaggaaggaaaattatgtggatatattgaatcaacatctcaagacatcagttaaagcttggtcgca
>XM_036956045.1
ATGTCAGTCAGACCACTCGTCTTGCTCTGGGGTGAATGGTAATCTGCAGAATGGACGTTTCTGAGTTGTGTCGGAGTGTGGTTTCATAATGACATCAGAGTTGCGGGACGTGATTAATCACTGGGTTTTTACTCCGTTGTCAGATGACATAATTTCAGAATTCACGCAGCTAGTCAGACCAAGTAGGCTATGGAGTCTTAAAAGCGGGTCTGCACCCTATCTCTGTCTCACCCACAAACAGATACCCGATGATGAGAAGGGGTATAAGTTGGACCTCTTCTGTGTCCCCAAACACTATGAGGAGGATTTAGACCAGGTTATCATCCCCCATGGACTGATCATGGACAGgactGAGCGCCTGGCTCGTGATATAGTCCGGGACATGGGGGGACACCATATAGTAGCACTGTGTGTTCTCAAAGGAGGTTATACATTCTTTGCCGACCTGCTGGACTACATCAAGGCCCTAAATCAGAACAGCGATAAGTCTGTCCCGTTGACTGTGGATTTCATTAGGCTAAAGAGCTATTGCAATGACCAGTCTACAAACATTGTCAAAGTTATTGGAGGGGACGAGCTCTCAACTCTAACCGGGAAGGACATTGTGGAGACTGGGAGGACTATGGAGACACTGCTATCACTGCTGAGTGAATGCAATCCAAAGATGGTCAAAGTCGTCAGCCTTCTGGTCAAGAGAACACCAAGGAGCTCAGGATACAGACCAGACTACATCGGGTTTGAGGTGCCAGATTTGTTTCTGGTGGGATATGCCCTGGACTACAATGAGTACTTCAGAGATCTCAGTCACATCTGTATACTGAACGAGAACGCAAAGGAGAAGTACAAAGTGTGAGCTGAGGCGATAGACAGATGGATGACTAGAGACTAGGACCACTGTGATGATCCTGAGCTTTTTAGGGTTCTGAACCTTATTGTGAACACCTTACCTATTGTGAATTCAGTTTGCAAGATACTATttgagaaaacaaaaatgtattgaatCCATATTTTTGTTCCCCTAGAAGCAATGGGATGAGTTATGTTTTTAAGTAGAGGATTCGTGTAAAGATAGTTATGGGAGTACACTTTTTTTAATTTAGATTtgttattctatattatattggGTCCTTGGATACCTCTCATCTGATTTATGTTAGTAAGGATGGATTTTATGTTGCTTAATACAATCCACAGGATCTCAGGCGACTGtacatatccacagtaaaatctATGTTAGTCAAGTCATGTACTGCATTGTACAAACCAATGATGCTGTTTAACTCATATGCCAAGCCCATGCAAAGACAAGCCTGGAATGTAATGTAACAATTTTGTTTAATAATGGCAATGTTTTCATTCACCAAGGACATTAACAATCCTATTTTAATATTGCTGTCAATCTTaaatgtgtgtgttagagagatgCCTTCCATGGATTGACTTTAAAGAAAAGAGAAATCCGCACACTACTCttgttttttttcatttttattgaaGCATTTAAGGCCAAGAggcagtcggaagtttacatacacttatgttggagtcatgaaaacatgtttttcaagatcatgaggaaggaaaattatgtggatatattgaatcaacatctcaagacatcagttaaagcttggtcgca
>XM_021572777.2
tttttttgtacgACAAACTGCTAATAGGCTTAAATTATTTTCACACTAACGTCAGTAGCTAATTCGAAAATTGTACCATACAATCTATGGTATGCAACAAGGAATACAGCCGTAGGATTTTATCAAATGTTCATGTCAGATAAATCAGAATTTGGTCGGTAAAATGGATTGTGACGTCAGGGTTTAAAACCCCCAGGGGAGGGAGAGCAAGGTTGGAGTATCGTATGTAAGCTTTCGCCCACGGTAAAGTAGGCAGTAGGCGAGGAAGAGCGAGCGCGAGAGACCCACCACCCACCAAGCTAAATAGCATTCTTATTCCCTATTGATCAGAGCATGACTCTTCAAATATCACTCTAGTGAGGCGTGAACAGCAAGAGCGGTGATATGGCCTATATCCAGATACCCGATGATGAGAAGGGGTATAAGTTGGACCTCTTCTGTGTCCCCAAACACTATGAGGAGGATTTAGACCAGGTTATCATCCCCCATGGACTGATCATGGACAGgactGAGCGCCTGGCTCGTGATATAGTCCGGGACATGGGGGGACACCATATAGTAGCACTGTGTGTTCTCAAAGGAGGTTATACATTCTTTGCCGACCTGCTGGACTACATCAAGGCCCTAAATCAGAACAGCGATAAGTCTGTCCCGTTGACTGTGGATTTCATTAGGCTAAAGAGCTATTGCAATGACCAGTCTACAAACATTGTCAAAGTTATTGGAGGGGACGAGCTCTCAACTCTAACCGGGAAGAATGTTTTGATAGTTGAGGACATTGTGGAGACTGGGAGGACTATGGAGACACTGCTATCACTGCTGAGTGAATGCAATCCAAAGATGGTCAAAGTCGTCAGCCTTCTGGTCAAGAGAACACCAAGGAGCTCAGGATACAGACCAGACTACATCGGGTTTGAGGTGCCAGATTTGTTTCTGGTGGGATATGCCCTGGACTACAATGAGTACTTCAGAGATCTCAGTCACATCTGTATACTGAACGAGAACGCAAAGGAGAAGTACAAAGTGTGAGCTGAGGCGATAGACAGATGGATGACTAGAGACTAGGACCACTGTGATGATCCTGAGCTTTTTAGGGTTCTGAACCTTATTGTGAACACCTTACCTATTGTGAATTC

Function

NR:

description
hypoxanthine-guanine phosphoribosyltransferase-like

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0006166 purine ribonucleoside salvage biological_process
GO:0005737 cytoplasm cellular_component
GO:0004422 hypoxanthine phosphoribosyltransferase activity molecular_function

KEGG:

id description
K00760 hprT, hpt, HPRT1; hypoxanthine phosphoribosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956041.1 False 1650 mRNA 0.41 9 77752539 77758848
XM_036956045.1 False 1639 mRNA 0.41 8 77752539 77758855
XM_021572777.2 True 1136 mRNA 0.45 9 77753218 77759288

Neighbor

gene id symbol gene type direction distance location
nudt7 nudt7 coding downstream 3110 77745726 ~ 77749429 (-)
LOC110496686 NA coding downstream 7510 77715698 ~ 77745029 (-)
wwox wwox coding downstream 69566 77386469 ~ 77682973 (-)
LOC100136242 odf3 coding downstream 575743 77171774 ~ 77176796 (-)
LOC110496628 rabl2b coding downstream 580878 77166074 ~ 77171661 (-)
LOC110496728 LOC100194665 coding upstream 1439 77760727 ~ 77764403 (-)
LOC110496772 NA coding upstream 29945 77789233 ~ 77792954 (-)
LOC110502034 NA coding upstream 38937 77798150 ~ 77800327 (-)
LOC110496780 LOC106561328 coding upstream 133535 77892823 ~ 77915984 (-)
LOC110496798 NA coding upstream 227307 77986595 ~ 77999634 (-)
G187620 NA non-coding downstream 43475 77708532 ~ 77709064 (-)
G187615 NA non-coding downstream 54822 77697512 ~ 77697717 (-)
G187614 NA non-coding downstream 55032 77697243 ~ 77697507 (-)
G187606 NA non-coding downstream 62990 77689266 ~ 77689549 (-)
G187531 NA non-coding downstream 207638 77544412 ~ 77544901 (-)
G187635 NA non-coding upstream 17818 77777106 ~ 77780848 (-)
G187667 NA non-coding upstream 81219 77840507 ~ 77840913 (-)
G187687 NA non-coding upstream 121712 77881000 ~ 77881544 (-)
G187708 NA non-coding upstream 169762 77929050 ~ 77929258 (-)
G187579 LOC106561332 other downstream 49050 77702899 ~ 77703489 (-)
G187490 NA other downstream 281442 77470393 ~ 77471675 (-)
si:dkey-234i14.6 LOC106561240 other downstream 1428649 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 1459147 76273524 ~ 76293392 (-)
G188257 NA other upstream 857294 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 1463942 79223230 ~ 79224998 (-)
G189256 NA other upstream 1606561 79365849 ~ 79366569 (-)
G189806 NA other upstream 2000751 79760039 ~ 79760627 (-)
G190857 NA other upstream 2792839 80552127 ~ 80552484 (-)

Expression


Co-expression Network