LOC110496772


Basic Information

Item Value
gene id LOC110496772
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77789233 ~ 77792954 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469610.2
CTGGGCAGACCTGGTACCTATCATCACGGACAGAACCAGGAAGCAACAGGAAAAGAAGGAAACGTATATGATGGTCTTTGTTACTTCTACTACACACACTGTCCGTTAGTgtagtgatttaaaaaaaaatccttattAAAACTGGAAACTTGTTAGAAACAGGTTTTAATCGGTGGTGCACTAAATAACTATACGTTTTAGGTAGGTCTTTTTAAAATATCGGGTTCAGTTCAGCTGttgggtgggtataatttgttgAACGtttcaacaggaatctgttccaaaaacttcgTAAATAGCAAGGTTGCCTACAAATAACGCATACAAAGTTGCGGCAGTATTGCTGCAGAATATGATACCTATTAGGTAGTATACTAATTCATTACGTTTTTCACTCGCCATGATTATTCCGAaaaaatgtctgtcctcactCTGGTAGCCTATTGACAAACATTAAGAATACGTTACGTGGTGAGTTTGCCTATATGGCAGCTATTTCGCTAACGTTAGGTGAATTGATAATGTTACTTTGTAGGCATTTGTTGGCAACCGTGTACTTTAcgaagtttttggaacagattcctgtttTAACGTTCCACAAATGATACCCACCCGTATTCAGGGCTGATGGGATCAGGATGACCCGATGGCTGTCTACAGCTATCCCATGTGTAAGGAAAGCTTCATTCCCAGGCCTGTTCTGAAGAAAAACACTCTTCTGGCTGAATTGGTGGAAAACTAAAGAAAACAGGACCCTGAGCTGCTCCTCCAGCTCGCTGTTAAACTGGACCTGGAAATGTAGAGTGTGACGTCTGCACTGGGAGAACTCAAAGCAGTCAAgtcctgtctggtgtgtctggcctcttactgtgagactcaTCTCAAACTCACAATAAATCACCTGCCTTTAAGAAGCACAAACTGGTCAAAGCATTGACACAACTACAGGAGAAAATATAATCTCATCATGACAAACTGCTAGAGATGTACTGCTGTACCTGTGTACGATGGATGAACATAAAGGCCATGATGCTGGTTCAGCTGCACCAGAAAGGATAGAGAAACTGGATAGGAACCCCACTGTAAGATCTCACACAGGCTATTTACAAAAATGTGTCTATCTTCTAGCTGTATACATCATCTAAACAGATAGCATGCCACCCCACACTATTTAATTTCAGCCTAAACTATATGTATACATGGTCTCTCATTAAGTTCACATAGGGCTGTTTGATGTATTAGACAGTACATTTGTTTCAATGTGGTATGATGTATTTCTCTGCACAAACACATTGGGAAGAATCATCAGAAATTCAACCAGATAAtccaggaaagagaggaggagatacagGAGCTGAGACAGGCTGTGGAATATCTAAAGGACTCTGCACAGGCAGCAGTGGAGGACAGTGAGAGGATCTTTACTGAGCTGATCCACTCTATTAAAACAAGGCACTCAGGTGAAGGAGCCGAACAGAGCCCAGGAGAAGGCTGAAGTGAGTTGGGCTGAAGGACTCCTGGAGCAACTGGAGCAGGaggtggctgagctgaggaggAAAGATGCTGATATAAAGCAGCTCTCTCACACAGAGGTCCACATCCATTTCCTCCAGGTGACAACCTAGGTTACATCACTGGTTCTTTACAGGCCTGAGCAGTCTCACATGATCCCTGAATACCAAATCATCCCATACATAGGCGCGTGTGTAGATCAGAGAGGATTGGATAGGTAAGGCAATATGGTGTTTGCTCCATCTTGTCCTCTGAAAGACCATGTGGAATTGTTGTCATTTTATGGGACACCTGTCTAATTTTCCCTGATCTCAAAAAGTTTTAGATTGTAAATGCCTTTGCTTCTCAGTCTTTTTCTTTCATTTATTTATCTCTCAGTAGTTTccagtctctctgtgtccttcctGGATCTGAAGCCTTACCCAGCATCTCTGTCAACTCACACAAATCTTATGATTTATGATGAAGAAATGTGTCTCTGACCTGAAAAAGCCACTACTAAACTTGATGAAAAAGAACATGGTGAAGATATCTGGAGCAGTGAAAAAGGTTTACATTGTTCCACTTACTGATCCCAATACCAGAGAGTTCTTGAAATACTCCCGCTGGCTCACTTTGGATCCAGACCCAGCCAATGAGTACCTCTGGCTGTCTGAGGGGAACAGAAAGGGGATATGTAGAAGAGTCTCAGTCCTATCCTTACCATCCAGACAGATTTATCAACATTGACTGGTGTTGTGTAGAAAGGGTATGTCTGGAGCCTGCTACTGGGAAGTAGAGTGGAGCAGGGAGAGAGTTGAAGTAGCTGTCTCATACAAAAGCATCAGCAgggatagagaggaatatgagaGTTATTTTCGATGGAATGATCAGTTCTGGTGTTTGAACTGCAACCCACCCATTCACACTTTCTGGCACAATCAAAACATGACGGATATCCCTGTCCCCTGCCcctccagagtaggagtgtacATGGACCACAGGGCAGGAACTCTGTCCTTTTAGTGTCTCTGACACAATGACCCTCCTCCACAGAGTTCTGACCACACTCACACAGCGTTTGGGTTTTATTATGATGACTCATCTGTGAGGATACTGACACCTATTCAATGATAAGCATATACAGTTTAGTTATTCACACACAAAACAACTAGTGAAAGACATACAGTGCAGGTGACGTTGGAAACCAGAGGATTTATATGAAAACCACAACAGCAGCAAAAATATGTATATGAAAACCACAAAATGATATGTTACAAAACAGATTGTTCAATCAACAAATATGTATAAGCAAATTAAGTATAAACAAAGTGTAAACAAATGAGTCATATGTGCACTTCAATGGTGGAGGGAATGATGGTGAAGTCTGAGAGGGTAGTAGTCAATTATACATACTTGATTATTAAGTTGCTTGGCTGTTTCACTATAACTGAAATCTGTGTTTTCGGGACGTTAGAAAATATTTGTAATAAAACTAATACTGTATATTGATTATGTGCCTTCGTGAAGATAACTGCTTGATTGTATTGTATCATGTTTGTGTTAAATGATGTAGAATAAACTTGAAATGGAGGT
>XR_005037972.1
CTGGGCAGACCTGGTACCTATCATCACGGACAGAACCAGGAAGCAACAGGAAAAGAAGGAAACGTATATGATGGTCTTTGTTACTTCTACTACACACACTGTCCGTTAGTgtagtgatttaaaaaaaaatccttattAAAACTGGAAACTTGTTAGAAACAGGTTTTAATCGGTGGTGCACTAAATAACTATACGTTTTAGGTAGGTCTTTTTAAAATATCGGGTTCAGTTCAGCTGttgggtgggtataatttgttgAACGtttcaacaggaatctgttccaaaaacttcgTAAATAGCAAGGTTGCCTACAAATAACGCATACAAAGTTGCGGCAGTATTGCTGCAGAATATGATACCTATTAGGTAGTATACTAATTCATTACGTTTTTCACTCGCCATGATTATTCCGAaaaaatgtctgtcctcactCTGGTAGCCTATTGACAAACATTAAGAATACGTTACGTGGTGAGTTTGCCTATATGGCAGCTATTTCGCTAACGTTAGGTGAATTGATAATGTTACTTTGTAGGCATTTGTTGGCAACCGTGTACTTTAcgaagtttttggaacagattcctgtttTAACGTTCCACAAATGATACCCACCCGTATTCAGGGCTGATGGGATCAGGATGACCCGATGGCTGTCTACAGCTATCCCATGTGTAAGGAAAGCTTCATTCCCAGGCCTGTTCTGAAGAAAAACACTCTTCTGGCTGAATTGGTGGAAAACTAAAGAAAACAGGACCCTGAGCTGCTCCTCCAGCTCGCTGTTAAACTGGACCTGGAAATGTAGAGTGTGACGTCTGCACTGGGAGAACTCAAAGCAGTCAAgtcctgtctggtgtgtctggcctcttactgtgagactcaTCTCAAACTCACAATAAATCACCTGCCTTTAAGAAGCACAAACTGGTCAAAGCATTGACACAACTACAGGAGAAAATATAATCTCATCATGACAAACTGCTAGAGATGTACTGCTGTACCTGTGTACGATGGATGAACATAAAGGCCATGATGCTGGTTCAGCTGCACCAGAAAGGATAGAGAAACTGGATAGGAACCCCACTGTAAGATCTCACACAGGCTATTTACAAAAATGTGTCTATCTTCTAGCTGTATACATCATCTAAACAGATAGCATGCCACCCCACACTATTTAATTTCAGCCTAAACTATATGTATACATGGTCTCTCATTAAGTTCACATAGGGCTGTTTGATGTATTAGACAGTACATTTGTTTCAATGTGGTATGATGTATTTCTCTGCACAAACACATTGGGAAGAATCATCAGAAATTCAACCAGATAAtccaggaaagagaggaggagatacagGAGCTGAGACAGGCTGTGGAATATCTAAAGGACTCTGCACAGGCAGCAGTGGAGGACAGTGAGAGGATCTTTACTGAGCTGATCCACTCTATTAAAACAAGGCACTCAGGTGAAGGAGCCGAACAGAGCCCAGGAGAAGGCTGAAGTGAGTTGGGCTGAAGGACTCCTGGAGCAACTGGAGCAGGaggtggctgagctgaggaggAAAGATGCTGATATAAAGCAGCTCTCTCACACAGAGGTCCACATCCATTTCCTCCAGTAGTTTccagtctctctgtgtccttcctGGATCTGAAGCCTTACCCAGCATCTCTGTCAACTCACACAAATCTTATGATTTATGATGAAGAAATGTGTCTCTGACCTGAAAAAGCCACTACTAAACTTGATGAAAAAGAACATGGTGAAGATATCTGGAGCAGTGAAAAAGGTTTACATTGTTCCACTTACTGATCCCAATACCAGAGAGTTCTTGAAATACTCCCGCTGGCTCACTTTGGATCCAGACCCAGCCAATGAGTACCTCTGGCTGTCTGAGGGGAACAGAAAGGGGATATGTAGAAGAGTCTCAGTCCTATCCTTACCATCCAGACAGATTTATCAACATTGACTGGTGTTGTGTAGAAAGGGTATGTCTGGAGCCTGCTACTGGGAAGTAGAGTGGAGCAGGGAGAGAGTTGAAGTAGCTGTCTCATACAAAAGCATCAGCAgggatagagaggaatatgagaGTTATTTTCGATGGAATGATCAGTTCTGGTGTTTGAACTGCAACCCACCCATTCACACTTTCTGGCACAATCAAAACATGACGGATATCCCTGTCCCCTGCCcctccagagtaggagtgtacATGGACCACAGGGCAGGAACTCTGTCCTTTTAGTGTCTCTGACACAATGACCCTCCTCCACAGAGTTCTGACCACACTCACACAGCGTTTGGGTTTTATTATGATGACTCATCTGTGAGGATACTGACACCTATTCAATGATAAGCATATACAGTTTAGTTATTCACACACAAAACAACTAGTGAAAGACATACAGTGCAGGTGACGTTGGAAACCAGAGGATTTATATGAAAACCACAACAGCAGCAAAAATATGTATATGAAAACCACAAAATGATATGTTACAAAACAGATTGTTCAATCAACAAATATGTATAAGCAAATTAAGTATAAACAAAGTGTAAACAAATGAGTCATATGTGCACTTCAATGGTGGAGGGAATGATGGTGAAGTCTGAGAGGGTAGTAGTCAATTATACATACTTGATTATTAAGTTGCTTGGCTGTTTCACTATAACTGAAATCTGTGTTTTCGGGACGTTAGAAAATATTTGTAATAAAACTAATACTGTATATTGATTATGTGCCTTCGTGAAGATAACTGCTTGATTGTATTGTATCATGTTTGTGTTAAATGATGTAGAATAAACTTGAAATGGAGGT

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469610.2 False 3087 mRNA 0.41 4 77789233 77792954
XR_005037972.1 True 2810 mRNA 0.41 5 77789233 77792954

Neighbor

gene id symbol gene type direction distance location
LOC110496728 LOC100194665 coding downstream 24830 77760727 ~ 77764403 (-)
LOC110496739 LOC106561348 coding downstream 29945 77752539 ~ 77759288 (-)
nudt7 nudt7 coding downstream 39804 77745726 ~ 77749429 (-)
LOC110496686 NA coding downstream 44204 77715698 ~ 77745029 (-)
wwox wwox coding downstream 106260 77386469 ~ 77682973 (-)
LOC110502034 NA coding upstream 5271 77798150 ~ 77800327 (-)
LOC110496780 LOC106561328 coding upstream 99869 77892823 ~ 77915984 (-)
LOC110496798 NA coding upstream 193641 77986595 ~ 77999634 (-)
LOC110496807 LOC106561343 coding upstream 225706 78018660 ~ 78024454 (-)
LOC110502067 LOC106561342 coding upstream 231453 78024407 ~ 78025382 (-)
G187635 NA non-coding downstream 8385 77777106 ~ 77780848 (-)
G187620 NA non-coding downstream 80169 77708532 ~ 77709064 (-)
G187615 NA non-coding downstream 91516 77697512 ~ 77697717 (-)
G187614 NA non-coding downstream 91726 77697243 ~ 77697507 (-)
G187606 NA non-coding downstream 99684 77689266 ~ 77689549 (-)
G187667 NA non-coding upstream 47553 77840507 ~ 77840913 (-)
G187687 NA non-coding upstream 88046 77881000 ~ 77881544 (-)
G187708 NA non-coding upstream 136096 77929050 ~ 77929258 (-)
LOC110496818 tmm60 non-coding upstream 278363 78071317 ~ 78079168 (-)
G187579 LOC106561332 other downstream 85744 77702899 ~ 77703489 (-)
G187490 NA other downstream 318136 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 617594 77166074 ~ 77171661 (-)
si:dkey-234i14.6 LOC106561240 other downstream 1465343 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 1495841 76273524 ~ 76293392 (-)
G188257 NA other upstream 823628 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 1430276 79223230 ~ 79224998 (-)
G189256 NA other upstream 1572895 79365849 ~ 79366569 (-)
G189806 NA other upstream 1967085 79760039 ~ 79760627 (-)
G190857 NA other upstream 2759173 80552127 ~ 80552484 (-)

Expression


Co-expression Network