LOC110502034


Basic Information

Item Value
gene id LOC110502034
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77798150 ~ 77800327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502034
CAGAACAAACAGGGAAACTAAACGTATTTCTGAGACTCTGCTGCTTAGTCTGTTAGTCTGTGTATCACCATGGCAGAAACAATTTTAGAAGATAAggatttgattacctgttcaatCTGTCTGGACCTACTGAAGGATCCAGTGACTACTGCCTGTGGACACAGTTACTGTATGGGCTGTATTAAGGACTGCTGGGATCAGGATGATCTGAAAGGTAACTACAGCTGTCCCTTGTGCATGGAAAGATTCACCCCAAGACTTGTTCTGAGGAAAAATCCTCTACTGAATTAGTGGAGAAACTGAAGACAGGACTCCAACCTGCTCCTCCTAATCTCTGATAAGATGGACCTTTAGGTGTGGGGTGACATCTGCACTGGGAGAAAACTCATAGCTGTCAAGTCCTGCCTGCTGTGTCCAGCCTCTTACTGTGAGTCTCACCTGAAACTTCATAATGACCTCAACCCGGGAAAAAAACATGAAGCTACTGGACAACTACAGAAGATCTGCTCTCATCACAATAAACTGCTGGAGGTTTACTGCTGTACCGATCGGCAGTGTATCTGTCTGCTGTGTGTGATGGATGAACATAAAGGCCATGATACGGTCTCAGTTGTAGCTGAAAGGACTGAGAAACGGAAGCAGTTGGAGGAGAATCAGCAGAAATCTGAGCTGAAAACCCAGGATAGAGAGAAGGAAATGCAGAAGCTGAGACAGGCTGTGGtctctctgaaggtgaatgttagGTCCATATATAGTGAAATTACAGTCAGGCTGTCTGAGGTCCTGGCGAGAGCTGAGTGAATAGGGTGGTTGAAATCGACCCCATCCTCTCTGGGTCGTAAAAATGCTCTGCACAGGCGTAATTGGAAGACAGTGAGAGGACCTTTACTGAGCTGATTCGCTCCATTAATGGAAGGCGCTCCGAGatgaaggagctgatcagaaCCCAGAAGAAGGCTGATGTGAGACAGGCTAAAATGTGACTGAAGCAACTGGAGCCGGAGGTGGCTGAGCTAAGGAAGAGAGATGCTGAGCTGGAGCAGCTTTCACACACAGATCACATCTATTTCCTTCAGGTGACTTCTCTATCCTAGATGTCCCTCACAAATGACTTTCCAGTGACTATCTCTAGACTTCTTTCTCAGTGAAATGTACTTCAAAACACAACCTTTGTCTTTGTCAATATCGTAGAGTTTCCAGTCCCTCTGTGTCCCTCCTATATCTGAGGCTATACCCACAATCATTAAGTTCCCGAGTGGttcagcgatctaaggcactgcatcccagtgcaaaaggcatcactacagtccctggttcaaatccaggcttcatcacaactggccgtgattgcgagtcccatagggcggcgcacaattggcccagtg
>TU212772
gttgagaaggaacctgcaagtaagcatttcatgtgtatcccgtacatacGACTCATAAAAATTGAAATGTTTCAGTATCAATAAACCGTTTTTCTCTGGTTGTGATGGACCACATGTGCCTTCTGCTAGCCAGACACGGTCTTATATCTCAGTTCACACAGAACCAGGCAGAAAGCCAAGTTTCAAGTTCAGTGGAAGCCACTCCTACTGCTCAGAACAAACAGGGAAACTAAACGTATTTCTGAGACTCTGCTGCTTAGTCTGTTAGTCTGTGTATCACCATGGCAGAAACAATTTTAGAAGATAAggatttgattacctgttcaatCTGTCTGGACCTACTGAAGGATCCAGTGACTACTGCCTGTGGACACAGTTACTGTATGGGCTGTATTAAGGACTGCTGGGATCAGGATGATCTGAAAGGTAACTACAGCTGTCCCTTGTGCATGGAAAGATTCACCCCAAGACTTGTTCTGAGGAAAAATCCTCTACTGAATTAGTGGAGAAACTGAAGACAGGACTCCAACCTGCTCCTCCTAATCTCTGATAAGATGGACCTTTAGGTGTGGGGTGACATCTGCACTGGGAGAAAACTCATAGCTGTCAAGTCCTGCCTGCTGTGTCCAGCCTCTTACTGTGAGTCTCACCTGAAACTTCATAATGACCTCAACCCGGGAAAAAAACATGAAGCTACTGGACAACTACAGAAGATCTGCTCTCATCACAATAAACTGCTGGAGGTTTACTGCTGTACCGATCGGCAGTGTATCTGTCTGCTGTGTGTGATGGATGAACATAAAGGCCATGATACGGTCTCAGTTGTAGCTGAAAGGACTGAGAAACGGAAGCAGTTGGAGGAGAATCAGCAGAAATCTGAGCTGAAAACCCAGGATAGAGAGAAGGAAATGCAGAAGCTGAGACAGGCTGTGGtctctctgaaggtgaatgttagGTCCATATATAGTGAAATTACAGTCAGGCTGTCTGAGGTCCTGGCGAGAGCTGAGTGAATAGGGTGGTTGAAATCGACCCCATCCTCTCTGGGTCGTAAAAATGCTCTGCACAGGCGTAATTGGAAGACAGTGAGAGGACCTTTACTGAGCTGATTCGCTCCATTAATGGAAGGCGCTCCGAGatgaaggagctgatcagaaCCCAGAAGAAGGCTGATGTGAGACAGGCTAAAATGTGACTGAAGCAACTGGAGCCGGAGGTGGCTGAGCTAAGGAAGAGAGATGCTGAGCTGGAGCAGCTTTCACACACAGATCACATCTATTTCCTTCAGGTGACTTCTCTATCCTAGATGTCCCTCACAAATGACTTTCCAGTGACTATCTCTAGACTTCTTTCTCAGTGAAATGTACTTCAAAACACAACCTTTGTCTTTGTCAATATCGTAGAGTTTCCAGTCCCTCTGTGTCCCTCCTATATCTGAGGCTATACCCACAATCATTAAGTTCCCGAGTGGttcagcgatctaaggcactgcatcccagtgcaaaaggcatcactacagtccctggttcaaatccaggcttcatcacaactggccgtgattgcgagtcccatagggcggcgcacaattggcccagtgtcgtccaggttgacctgggtaggctgtcattgtaaataaaaatgtgttcttcactgacttgcctagttaaataaa

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502034 False 1385 mRNA 0.47 2 77798225 77800115
TU212772 True 1672 lncRNA 0.46 2 77798150 77800327

Neighbor

gene id symbol gene type direction distance location
LOC110496772 NA coding downstream 5271 77789233 ~ 77792954 (-)
LOC110496728 LOC100194665 coding downstream 33822 77760727 ~ 77764403 (-)
LOC110496739 LOC106561348 coding downstream 38937 77752539 ~ 77759288 (-)
nudt7 nudt7 coding downstream 48796 77745726 ~ 77749429 (-)
LOC110496686 NA coding downstream 53196 77715698 ~ 77745029 (-)
LOC110496780 LOC106561328 coding upstream 92708 77892823 ~ 77915984 (-)
LOC110496798 NA coding upstream 186480 77986595 ~ 77999634 (-)
LOC110496807 LOC106561343 coding upstream 218545 78018660 ~ 78024454 (-)
LOC110502067 LOC106561342 coding upstream 224292 78024407 ~ 78025382 (-)
LOC110496818 tmm60 coding upstream 271609 78071317 ~ 78079168 (-)
G187635 NA non-coding downstream 17377 77777106 ~ 77780848 (-)
G187620 NA non-coding downstream 89161 77708532 ~ 77709064 (-)
G187615 NA non-coding downstream 100508 77697512 ~ 77697717 (-)
G187614 NA non-coding downstream 100718 77697243 ~ 77697507 (-)
G187606 NA non-coding downstream 108676 77689266 ~ 77689549 (-)
G187667 NA non-coding upstream 40392 77840507 ~ 77840913 (-)
G187687 NA non-coding upstream 80885 77881000 ~ 77881544 (-)
G187708 NA non-coding upstream 128935 77929050 ~ 77929258 (-)
G187767 NA non-coding upstream 276024 78076139 ~ 78076386 (-)
G187579 LOC106561332 other downstream 94736 77702899 ~ 77703489 (-)
G187490 NA other downstream 327128 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 626586 77166074 ~ 77171661 (-)
si:dkey-234i14.6 LOC106561240 other downstream 1474335 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 1504833 76273524 ~ 76293392 (-)
G188257 NA other upstream 816467 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 1423115 79223230 ~ 79224998 (-)
G189256 NA other upstream 1565734 79365849 ~ 79366569 (-)
G189806 NA other upstream 1959924 79760039 ~ 79760627 (-)
G190857 NA other upstream 2752012 80552127 ~ 80552484 (-)

Expression


Co-expression Network