LOC110502056 (LOC106561330)


Basic Information

Item Value
gene id LOC110502056
gene name LOC106561330
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77838768 ~ 77882208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956070.1
atgtgtgtgtgcgtgtgaggcGGTAGCTGTTTCACACATCACTTTCATTTGAGTCTACGCCAAGGAACAGCGGTAGCCTATGGATATTTTTCTATACTGGGATTCATTTAAAAAGGAGTATTTGCATGTACGTGgtATGAGCCATTAGTCGAAGTTGCGGTCATTAGGAATGATCTCCACGCCAACTCGCACCACGGCCACGGTCAGCCCTCTCACCCCGCTAGCCAATGGGAGTGCGGCTGCTCAGTCTGCTCACTCTGGATTCGCTGCCGCCCTCCGTCAATTGGCCAAACAGGCTGAAGATCCCAGAGGTTCTTCTCCCAGTAGTGAGTCTTCAGTCTCCTCTCCAGCCACCTGTCTCAGTAATTCAGTCACCACTCCTAAGAGGGGGTTGCCAGGGCCACTCCAGACCTCAAGTGGGGTAGACAgccttccctccacccctcctggAGTAACCATCGCCCCAACTCACAGCAAGACCAGCAACATTCTCTGTATAGGAGAAGGGCACCAGgctgAGTCAGGTGTTTGTGGAGTGAGTAGGGAGAGTGTTGGGTCTGAGCTCAGCCCTACCCAGAAGAAAGGAGGTTATCCTGTCCCCTCTCATCACGTCTTGGCTCACTCCTCTTACCCCTTCAGCCTCACCCCCAGCTCTGTCATGCAGGACCGGCGACTACAGGGCCTTAGTCTACCTGGTCAAGTACACCCTGCAGTTCCCTCGGGGACGGTCCCAGAGGAGTACCTGAGAGGACTCCGCCCCTTTGCTACCTCAGAAGACCTCCGCCTACGCTCGCTGCACCTGGGGCTTGACCCCGTCACCGCTGCCcatgttactgctgctgctgcctacTACCACCCTGCCTACCTCCACCACCTACACAGgATGGAggagtctctgtgtctgtctgcactgCGCTCTCAGTTCTACTCTGTACCAGCAGGCGGAGCCTTCTCTACCCTCCACCCCTCTGCCCTCCACATGCACGTGCCTGGGGCACGCTACCCTGGGGAGCTCAGCCACACACAAAGCGCAATAGCtgagagACTACAGATGGAGGAAGACCTTCGCCaacgagagaaacagagggagctTGAGCtggaacgggagagagagagggagcaggacagagagagagaaagggagcgagaaaggcagagggagagagagagggagagggagatggtgaaAGCGGTGGGGACTCAGTACCTTGCTGGACTGAAGGCTCTCACGGCTCCGCCGGAGGACAGGGTCAGACCTGGAGAGAGGCTGACACCCAAAAGGCTGGGTAAGCCCACCCTCCCTGCCCTCCCAGTCCCTAAACCTCTACAACCAgacctccagtcctccaggggGTCAGCCTCTCACCCCATTCTCACCCTGGTGCCCTCTCAGATGGGGAACGCACACACTGCCTCAGCCTCTACCGGGGGGCTCCATGGAACACTGGCCTCTGCAATGAAGCTCCAACAGGCCAACGGGGAGAAGCTCTGGTTGTCAAAGCAACGCCGGCAGGGGCAGGAGAGTGAGGCGTGGTCACCTGGGGAAGGGGTGGAGCCTAGGAGACACAGCAACAGGTCCAACGCCAGCCAGCGTGACCCAGGCAACAGAGAGTCTCAACCCCACCTAGGAGCCCCACCTCCACTCATCTCCCCCAAAGctcaccctcacctcctcccccacccccctgtccctcccaccaccctctggaaccctgcctctctcacagAGACCTCCCCAGACCCTCGTCGCAGGTTTGACTCCCCTATTCCCCCCTCCCGCCTTCCTCCTGGTCTGACCAGAGCTGAGTGGCCCCCCAGCTGGGAGCGGGGGGAGGAGGGATgcaggaggatgggggagggccCAGAGAGGTTCTCCTTCATCAGGGGACCCGTTCTGCAGATTTCTGGCCTCTGGAGCATGGCTGAGCTTGAAAGATCCACTCACAGTCTCCACCACCAAcataaccaccaccataaccACCTCCACCAGAAGGGCTCACTGCTCCTGTCctcccccagccccagctctgaCCTGGGGGTCCAGCGCCCGTccagctccccctctccctccagggACCTCCAGAAGTCTGAGCCGCCAGGCCAGGAGCCTCAAAACCCAGTGGTGTACGATAAGATCCTTCAGCAGCAGCACAGGCTGGTCAGCAAGCTGGATCtggaggagagcaggaggagagaggccaggGAGGGAGggtATTACTATGATCTAGATGAGTCGTATGATGAGAGTGATGAGGAGGAAGTGAAGGCCCACCTCAGAAGGGTTGCAGAGCAGCCCCCCCTAAAACTAGACACATCCTCAGAGaagGTGTGTTTTCTGCGCGTGTGTGGCCTGACCACGCTGGCCCATCGTGACCAGCTGTTtcatcagaagaggaggaagaggaggaggatgctgaGAGAGCGCAgcatctcccctcctcctgtaCAAGGCAAGAGGAAGACCCCTTGTTCTACTGTGGCACCTGTTCCCCCCCTCAGCACCACTCTCACCCCTGAAGAGATGGACTGTTTCCCCCAACTGGAGGACAAGAAACACTTCCTCAACATGCTTAGCCTGTCCCATGTCACCAGCCAGCAGAGGAGAGATAAGGAAAAGATGGAGGGGTTGCTGAAGGCTATAAAGCTAAAGAGGGTGACATTGGACACCATCAGATACAACCCATTACCCCTCTGTAGCAGCACTCCTGTTCTCTCAACTGGCGACTACACACCTGACCTCCCAGCCTGCAAGTCAAACGGACTAGACTACCCAGACTCCCCAAGCCCCTTGCCTCCCTACCCCCACCATCCCGACAACCTTCACACAGACCCACTAAACCCCCAACCCCCTCCACCCCGCCACCCCCCTCCCCTGGGCCTCCACCCCGACAGGGCAGGACTGTGCGAACGTCACCCATCTAAGAGGCTCCAGGGTCTCCAGAACGGAGCGAGCCACCTTGGCCATCCTACCCAACTGAAGGTGCCCCTGGCTGGGCAGAATGGGCAGAACAAGCCCTGGGAAAGATTCATCCGGGAGGACTTCGCCCAACACTTCCACCAGGCTGTGTTGCAGTCTACCCACAAGACACTGGGTAGCTCCATATGCGTTCCGGAGTCCAGTATAAAGTCTGAGCCCTCAGCGCCCTACAACATCCCCCCTCTGAAGAGACCAGACCCCCTCcacacacctccacaccccaCCAATGGGCATCATCCCTACCCTTCTCCACCCCACCATGACCCTGATGGCGTACGGGTTGAGCGCtcagaggaagatgaggaagaggatgaggaagaaacCCCTAGGAAGTGGAAGGGTATAGAGTCCGTCTTTGAGGCATATCAGGAGTATGTGGATGagcGGGGTATGGAGAGACAGGTTCTCCACAGTCAGTGCAGGAGGCTGGAGACTCAGAACTACACTCTCAGTCTGACAGCTGAACAACTCTCACACAGCATGGCGgagctgctgagtcagagacagagggtgagagatgagagagagagactgcaggcTCAGCTAGAGCACTTCAGGAAGTGTCTGACCCTTCCCAACGTGCACTGGGGCAAGGGGCAGCTCAAAGGTCACCTTCCCCGGTGACTCCCTACCCTGCTCCTGACAgattgacagagacagacagacagactgactgacctctGGAGAGAGGAAACTGGATTGGTTCCCAGTCAGAGGCAGAGATGGAAGAGAACTCTGGActgggaaggaagagaggatggtAGAAAGGGAGGAGTGCCACACTCCTAGACTCTGTAGTGTGGTCAGACTCACCATTGGTGAAAGACTAGAAGCCTAAAAGCTGGAGGTCgtagctacagtggggagaacaagtatttgatacactgtcgattttgcaggttttcctacttacaaagcatgtagagccaaaatccctgctgcagtgtgtgcaaacctggtcaagaactacaggaaac
>XM_036956064.1
ggtatagagaggatagagatagagaggagaggaagaaagataaGGGAGGGGGACAGAATGAGGGAATCACGTGACAGTGTAGCAGCTGCACAACTGAGAGGGCTGttcctggaggagagagagagcgacagagagagagagagagagagtgaaagaacaAGAGAGAGTGGGGCGAGAGAGaagaaatgagagggagagagagggaacgtgaAGAGGAGTGAGCGAGTGTGAAAGGGAAAaagagcgtgagggagagagaaaagataaTGCAAGCAGGAAGAACACGGAGCCAGCCggtATGAGCCATTAGTCGAAGTTGCGGTCATTAGGAATGATCTCCACGCCAACTCGCACCACGGCCACGGTCAGCCCTCTCACCCCGCTAGCCAATGGGAGTGCGGCTGCTCAGTCTGCTCACTCTGGATTCGCTGCCGCCCTCCGTCAATTGGCCAAACAGGCTGAAGATCCCAGAGGTTCTTCTCCCAGTAGTGAGTCTTCAGTCTCCTCTCCAGCCACCTGTCTCAGTAATTCAGTCACCACTCCTAAGAGGGGGTTGCCAGGGCCACTCCAGACCTCAAGTGGGGTAGACAgccttccctccacccctcctggAGTAACCATCGCCCCAACTCACAGCAAGACCAGCAACATTCTCTGTATAGGAGAAGGGCACCAGgctgAGTCAGGTGTTTGTGGAGTGAGTAGGGAGAGTGTTGGGTCTGAGCTCAGCCCTACCCAGAAGAAAGGAGGTTATCCTGTCCCCTCTCATCACGTCTTGGCTCACTCCTCTTACCCCTTCAGCCTCACCCCCAGCTCTGTCATGCAGGACCGGCGACTACAGGGCCTTAGTCTACCTGGTCAAGTACACCCTGCAGTTCCCTCGGGGACGGTCCCAGAGGAGTACCTGAGAGGACTCCGCCCCTTTGCTACCTCAGAAGACCTCCGCCTACGCTCGCTGCACCTGGGGCTTGACCCCGTCACCGCTGCCcatgttactgctgctgctgcctacTACCACCCTGCCTACCTCCACCACCTACACAGgATGGAggagtctctgtgtctgtctgcactgCGCTCTCAGTTCTACTCTGTACCAGCAGGCGGAGCCTTCTCTACCCTCCACCCCTCTGCCCTCCACATGCACGTGCCTGGGGCACGCTACCCTGGGGAGCTCAGCCACACACAAAGCGCAATAGCtgagagACTACAGATGGAGGAAGACCTTCGCCaacgagagaaacagagggagctTGAGCtggaacgggagagagagagggagcaggacagagagagagaaagggagcgagaaaggcagagggagagagagagggagagggagatggtgaaAGCGGTGGGGACTCAGTACCTTGCTGGACTGAAGGCTCTCACGGCTCCGCCGGAGGACAGGGTCAGACCTGGAGAGAGGCTGACACCCAAAAGGCTGGGTAAGCCCACCCTCCCTGCCCTCCCAGTCCCTAAACCTCTACAACCAgacctccagtcctccaggggGTCAGCCTCTCACCCCATTCTCACCCTGGTGCCCTCTCAGATGGGGAACGCACACACTGCCTCAGCCTCTACCGGGGGGCTCCATGGAACACTGGCCTCTGCAATGAAGCTCCAACAGGCCAACGGGGAGAAGCTCTGGTTGTCAAAGCAACGCCGGCAGGGGCAGGAGAGTGAGGCGTGGTCACCTGGGGAAGGGGTGGAGCCTAGGAGACACAGCAACAGGTCCAACGCCAGCCAGCGTGACCCAGGCAACAGAGAGTCTCAACCCCACCTAGGAGCCCCACCTCCACTCATCTCCCCCAAAGctcaccctcacctcctcccccacccccctgtccctcccaccaccctctggaaccctgcctctctcacagAGACCTCCCCAGACCCTCGTCGCAGGTTTGACTCCCCTATTCCCCCCTCCCGCCTTCCTCCTGGTCTGACCAGAGCTGAGTGGCCCCCCAGCTGGGAGCGGGGGGAGGAGGGATgcaggaggatgggggagggccCAGAGAGGTTCTCCTTCATCAGGGGACCCGTTCTGCAGATTTCTGGCCTCTGGAGCATGGCTGAGCTTGAAAGATCCACTCACAGTCTCCACCACCAAcataaccaccaccataaccACCTCCACCAGAAGGGCTCACTGCTCCTGTCctcccccagccccagctctgaCCTGGGGGTCCAGCGCCCGTccagctccccctctccctccagggACCTCCAGAAGTCTGAGCCGCCAGGCCAGGAGCCTCAAAACCCAGTGGTGTACGATAAGATCCTTCAGCAGCAGCACAGGCTGGTCAGCAAGCTGGATCtggaggagagcaggaggagagaggccaggGAGGGAGggtATTACTATGATCTAGATGAGTCGTATGATGAGAGTGATGAGGAGGAAGTGAAGGCCCACCTCAGAAGGGTTGCAGAGCAGCCCCCCCTAAAACTAGACACATCCTCAGAGaagGTGTGTTTTCTGCGCGTGTGTGGCCTGACCACGCTGGCCCATCGTGACCAGCTGTTtcatcagaagaggaggaagaggaggaggatgctgaGAGAGCGCAgcatctcccctcctcctgtaCAAGGCAAGAGGAAGACCCCTTGTTCTACTGTGGCACCTGTTCCCCCCCTCAGCACCACTCTCACCCCTGAAGAGATGGACTGTTTCCCCCAACTGGAGGACAAGAAACACTTCCTCAACATGCTTAGCCTGTCCCATGTCACCAGCCAGCAGAGGAGAGATAAGGAAAAGATGGAGGGGTTGCTGAAGGCTATAAAGCTAAAGAGGGTGACATTGGACACCATCAGATACAACCCATTACCCCTCTGTAGCAGCACTCCTGTTCTCTCAACTGGCGACTACACACCTGACCTCCCAGCCTGCAAGTCAAACGGACTAGACTACCCAGACTCCCCAAGCCCCTTGCCTCCCTACCCCCACCATCCCGACAACCTTCACACAGACCCACTAAACCCCCAACCCCCTCCACCCCGCCACCCCCCTCCCCTGGGCCTCCACCCCGACAGGGCAGGACTGTGCGAACGTCACCCATCTAAGAGGCTCCAGGGTCTCCAGAACGGAGCGAGCCACCTTGGCCATCCTACCCAACTGAAGGTGCCCCTGGCTGGGCAGAATGGGCAGAACAAGCCCTGGGAAAGATTCATCCGGGAGGACTTCGCCCAACACTTCCACCAGGCTGTGTTGCAGTCTACCCACAAGACACTGGGTAGCTCCATATGCGTTCCGGAGTCCAGTATAAAGTCTGAGCCCTCAGCGCCCTACAACATCCCCCCTCTGAAGAGACCAGACCCCCTCcacacacctccacaccccaCCAATGGGCATCATCCCTACCCTTCTCCACCCCACCATGACCCTGATGGCGTACGGGTTGAGCGCtcagaggaagatgaggaagaggatgaggaagaaacCCCTAGGAAGTGGAAGGGTATAGAGTCCGTCTTTGAGGCATATCAGGAGTATGTGGATGagcGGGGTATGGAGAGACAGGTTCTCCACAGTCAGTGCAGGAGGCTGGAGACTCAGAACTACACTCTCAGTCTGACAGCTGAACAACTCTCACACAGCATGGCGgagctgctgagtcagagacagagggtgagagatgagagagagagactgcaggcTCAGCTAGAGCACTTCAGGAAGTGTCTGACCCTTCCCAACGTGCACTGGGGCAAGGGGCAGCTCAAAGGTCACCTTCCCCGGTGACTCCCTACCCTGCTCCTGACAgattgacagagacagacagacagactgactgacctctGGAGAGAGGAAACTGGATTGGTTCCCAGTCAGAGGCAGAGATGGAAGAGAACTCTGGActgggaaggaagagaggatggtAGAAAGGGAGGAGTGCCACACTCCTAGACTCTGTAGTGTGGTCAGACTCACCATTGGTGAAAGACTAGAAGCCTAAAAGCTGGAGGTCgtagctacagtggggagaacaagtatttgatacactgtcgattttgcaggttttcctacttacaaagcatgtagagccaaaatccctgctgcagtgtgtgcaaacctggtcaagaactacaggaaac

Function

NR:

description
PREDICTED: genetic suppressor element 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956070.1 False 3954 mRNA 0.58 15 77838768 77882208
XM_036956064.1 True 4116 mRNA 0.58 15 77851929 77882208

Neighbor

gene id symbol gene type direction distance location
LOC110496763 dynlrb2 coding upstream 57973 77777066 ~ 77780795 (+)
nfat5a LOC106561332 coding upstream 121980 77697226 ~ 77716788 (+)
LOC110496661 LOC106561266 coding upstream 532302 77295087 ~ 77387938 (+)
LOC110502025 LOC106573403 coding upstream 678924 76863449 ~ 77160850 (+)
mapk8ip2 arsa coding upstream 1164695 76538676 ~ 76714965 (+)
LOC100135906 LOC100135906 coding downstream 81293 77963501 ~ 77969044 (+)
fbxl13 fbxl13 coding downstream 89636 77971844 ~ 78003571 (+)
LOC110502077 LOC106561326 coding downstream 165165 78047373 ~ 78066844 (+)
LOC110496871 LOC106561322 coding downstream 351695 78233903 ~ 78266800 (+)
LOC110496927 LOC106561319 coding downstream 465872 78348080 ~ 78352645 (+)
G187052 NA non-coding upstream 71914 77766622 ~ 77766854 (+)
G187051 NA non-coding upstream 73919 77764649 ~ 77764849 (+)
G187040 NA non-coding upstream 89338 77749023 ~ 77749430 (+)
G187039 nudt7 non-coding upstream 91879 77745736 ~ 77746889 (+)
G187030 NA non-coding upstream 110368 77727277 ~ 77728400 (+)
G187125 NA non-coding downstream 10616 77892824 ~ 77896154 (+)
G187138 NA non-coding downstream 35189 77917397 ~ 77917604 (+)
G187143 NA non-coding downstream 41444 77923652 ~ 77923853 (+)
G187151 NA non-coding downstream 47576 77929784 ~ 77930091 (+)
G187154 NA non-coding downstream 49155 77931363 ~ 77931647 (+)
G185718 NA other upstream 1006268 76830413 ~ 76832500 (+)
G185549 LOC106561235 other upstream 1231793 76534378 ~ 76606975 (+)
G185462 chkb other upstream 1404153 76433817 ~ 76434615 (+)
G187260 NA other downstream 255305 78137513 ~ 78177583 (+)
G187320 LOC106561323 other downstream 385081 78267289 ~ 78270045 (+)
LOC110496993 LOC106561317 other downstream 602616 78467699 ~ 78519071 (+)
LOC110497055 LOC106561315 other downstream 697164 78578149 ~ 78580190 (+)

Expression


Co-expression Network