fbxl13 (fbxl13)


Basic Information

Item Value
gene id fbxl13
gene name fbxl13
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 77971844 ~ 78003571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572820.2
TcgtgtagttgagtagccagcctaggctACTTCTCAAATGTTGCTGTAATAGGTTTCTCCTTTGCATGGCGCTTTGTTGCACGTTTTTTTTGTAAGCAGGATAAAGTAAAGCAGATTAATTTAAATTGAATTCACAGATGTGAGCGTAGATGACTCAACTGTTGACTCGCTTATGCGTCCTATTCGGCCTGCAGTGTTTGACACATACGCTTGCCTtttagccacgttatgactgacttgtgatcattgcccttgctagtttgattgtatcgACATTCCCAACATTAGTTACAGTAGTCAGTTTTTGTTCAAAATATTGAGTTGTTGTAAGAAACTGCATCATAATATTGAGTTATTGTAAGAAACTGCATCCCGTGGAGGCAGAAAACAACGTACCAGGcaagctgtgatttacaacctgatggCAATATTTTTAGACTACCAAAATATGAATTATGCATTGAACCGCATCCATCTATTCTAGCAACAATgccttactgtatgtcatgatattttgagtcaaatagaacctatttttaaaacattttataaaaagtTGTTTTTGTAGCATAACTAGGAATGTCAcatttttgactgatattatgactgtctgtttgtttcatatttgCATATATGTCAATTCCACTTTAACcgttttaaatgtcaacttcagtAGGGTTAGGTCAGAGTTCGGACATCCCAAGGACCCAGATGAGATTTTTCCGTACACCACCTACAACATGGAATCTTGGTTACTAGGTAACGGTAAACTGTACATGGAAGTGTCCAATCAGAGAACAGACCGGGGCCTGCTTGCAAACTTCTGTGTTGACAAATATTTTGATAATTTTCtatttagctagttaacgttataTTACCTACTTTGGGATGGAGTTTTGATATGGCTTCTTTACAAAATGCTGACCCGGCGTTGAGGGAATATATACTGAAGCATTCCTTGCCCCAAATATTTCAGGCATTATTAACAGGTTTATGTGTGTCGTGTCCTGAAAGTCCATTACATTTTCTGGAAAGGAAGATTGTGTCTATTCAGGAAAACCGGGACACTGCTGAGATTGATTGGCATACATGTGTTGACGATCCAGAACAAGTCGCCGTGACCTCACTGGCAGGAAGCATGGTGCATGACATCTTTGGGAAACGAGATGATACACTGTTTCTCTCCCATTTGTTTGAGAAGGCCTACTCCTGTTACAGAATAAGTTTAACAAATATGTGCTTCAAGGCGTGGAAAAGGTTCATCTGGAATAAGCGGAAGGAGGCCAGGGAGTTGACACTGAAGATGGAGACAGCTGAGAGGCACTACATACAGAGGGGCCTGAGGGTCGCACTCTGCAAGTGGGTGGAGTGGGTACAGGTCTGCAAGAGAAGGCAGAACGATGCCATGAAAAAGATCCAGCGAGTGTGGAATGCTATCCACTGTAAGATTGTCATAGGTGCTTGGCGCTATGTGGTACAGGACTCAAAACGGACAAAGGAGTACTTTGAGAAACTGGAGAATGGTCTGTTGGAGATGAGCAGTAAGGACTCTGACGTTGCCATTGGAGAGGGACATGATGGACTCTCACTGCTACCTTGCAAGCTCTCAATAAagGTCTTCCAGAGACTAGACGTAGGAGACCTGCTGAAATGTGCAGAAGTGTGTCGGACCTGGAAGGCCATCGCTCAGACCTGCTCACTGTGGAGTCGGATCAGTTTCTCTGTGGAGAGGGACTGGATCACAGACCGCATCGTGGAACAGATCCTACAGAAGTACCGGCCATTTGTAGTTCACCTTAACATGCGTGGCTGCACCTCTCTACAGTGGCCCAGCTTCAAATGTATCAGTGAATGCAGAAACCTACAGGAGCTGAACCTTTCAGAGTGTTTCAACATTAAAGATGAGATGGTGTGTATGATTCTAGAAGGCTGCCCCACTCTGCTCTACCTGAACCTGTCCTTCTCATATGTGGCCAATGGGACTCTCAGAGAGCTCTCCAGGAGCTGTCTGAACCTGCAGTTCCTGAGTCTAGCATGCTGCCGTATGTTCACTGATAAAGGCTTACAGTACCTGGCCTCAGGGAAGGGCTGCCACAAGCTCATCCACCTTGACCTTTCTGGCTGCACTCAGATCTCAGTGGAAGGTTTCAGGTACATAGCAGCGGGCTGCCCTCTGCTCCAGCAGATAGTCTTCAATGACATGCCTACTCTGTCAGACAGCTGTGTGCTGGAGCTGGCCTCTAAGTGTCACTCTCTGTCTGCCATCTCCCTATGGGACACGCCCCATCTCTCAGACTCCGCCTTCAAAGCCATCGCTGAGGTGGCCAACCTCTCCAAGTTCAGTGTTgatgGTAACAGTCGTATGTCAGACATCAGTTGGAGGGCTCTGTGTCGTAGCTCTCCAGGCCTTACGAGACTCCATGCTGCTGACTGCCCTAGAATGACTGACTCCAGCCTAAAGTCTATGGGCGCCCTCAAAAACCTGGTCTACCTCAACATCTCACACTGCAGCAGGGTGAGTGACATGGGGCTGCGGTACCTGACTGAGGGGCCTTCTGCCTCTAAACTGAGGGAGCTGAATCTGAGCAACTGCAGCCGCATCAACGACTTAGCTATCATGAGGGTGGCTCAAAAgtgcagtaagcTGAACCACCTGAGTGTGTCTTACTGTGATAACCTGTCTAATTCTGGTCTGGAGTGGCTCAGTAgctgttcctctctcctctctctggacaTCAGTGGCTGCAACATCATGGACCAGGGGTTGATTGCTCTAGGTGGGAACCCTGGCCTGAAGAAGCTGGTTGCCTCTGAGTGTGTCTGGATCACTGACATTGGCATAGAGAAGTTCTGCAGGCAGGCGAGAGGTCTGGAGTATATTGATGTGTCTCACTGTGTAGCTCTATCTGACCAGGCCATCAAGGCTCTGTCCTTCTACTGCAGGACTATAGTCACGTTACGCATGCCTGGCTGCCCAaagATGACAGACCTGGCGGTACAGTACTTGACAGTAGGGCGTCACTTCCTGAGAGAGCTGGATGTGAGTGGCTGTGTCCTGCTGACTGATCGCACACCACGCTTCTTACAGACAGGCTGCCCACAGCTCAACACCATCAACATGGTCTACTGCAGGGGAATATCCAAgcaggcGGCTCTGAGGCTCCAGCCCTGTGTTGAGAAGTGGGAGCACAGTAACGATGACGCCCCCTACTGGTTCGGCTATGACAGTCTTGGCCAGCTGCTGCAGCCAATCGGACGACCCGACAAGATCCAGGACACCTGGGAAGAAGAGGAGCCAGCACCAAGAAACAACAAAAAGAGGAATTTGATAAAGGCCTGTGGAGAGGACTACGAATACACAgcatgaatacacacacagtcCATGCAGATAAACAAACGCACAACGACTTAgtttatacagtacacacacaccgcCTCACAATCTAAGGTAAATCAAATCCCTAACACATACACTGCACCTTACATTAACTCTAGCTCAGATATCAAGCAACGGGAAGGAATGGCCAAAGATTAATAACCAGAAAACAATATTTTGTATCTGAGAATCAATGCAGTATATACATTTATGCAGTTTATACAGAATATACATTTATGCAAAGCGTCTGCATCATACTGTTTCAAAGCTTTCTTCTATGCATTGCAACACAAGACAGATGATTGAATTTCATAATTACATCATAAAGAAAACAATTTTAGCTTGGAAATAatcattaaaaaataaatgtcctcaaTATGATTAGATTTATTTGTCTTTGTCAACACTTTTCCCAGTTTTTTGTATTTGCAGTAAATTGATCCCCCCCAAACCTATTTTGTACATTTTGCAGTTTCTACCCTGTGGTAAGAAAGTCTTAAGAGTTGTTCTTGCTTTGACTGTTGCACACACACTAACCACAGCAGTCTCTGAACTTCTCAAAAGTCCAGTTAGACTTCAAGCTCAATACCTGACTGAATATGTGAGACCTGAATGTTGTTCAGTGTTTCAATCTAAGAGCTCTGCTGATGACCACAAAGACAATGACTGAACTAGCCTGGCTGCCAGCATGCCACTATATTTCTGCTTGAGCCCTCTCGTAAAGCAGAAACATGACTGAGTTACCTCTACTAACCATGATCATGTGCTacaactgtatatagacatataaTATAGCCTGCAGTTTCCGTTATCACATATGTAGCATAGCCTTTACTTTCAGGTATGTTATTCAGTTCTA
>TU212305
gtttgtttagtggtctTGTTTGTTTTTAGATTAGATTGGATAACACTGTCTATGAGACGTATAAAGAACTCTGAGGGCTCATTTGTAATGTGCTATGAGCTGTTATGCATGCTTATATAGTCATATAATGCTATAATATGTGTGATATGTGATAGGACCAGAGGCACTATAAATGTAAATACAGAGATGGTATGAATAAAATGTAACCTTGTGTTGTCCTTCACCAGGATGAGATGGTGTGTATGATTCTAGAAGGCTGCCCCACTCTGCTCTACCTGAACCTGTCCTTCTCATATGTGGCCAATGGGACTCTCAGAGAGCTCTCCAGGAGCTGTCTGAACCTGCAGTTCCTGAGTCTAGCATGCTGCCGTATGTTCACTGATAAAGGCTTACAGTACCTGGCCTCAGGGAAGGGCTGCCACAAGCTCATCCACCTTGACCTTTCTGGCTGCACTCAGGTCAGTTCCTATGGTCCTCTCTGATCTGTATGTCTCCTCTTCTATCTGCTTCGACTATATCCAGATGAGTTtgtgctcctctcttctccaacaCGTCTGTGTCCTCTGCTACCCTGCTGTACTGAAGTCAGTTTGCGTGCTCCTCTCATTTACAAGTCTGTAGGTTGATACTGGGATTTGAGAGAggttctctctctgactctaagAGAGAAGGAGGTGGCTACAGCTAACACACTGGTTTTAGATTGCAACAGTCACCAGAGCCAGCGTTGGTCCAACTCCAGCTGGTTGAGTGTTTGtactctgcagagagagagagagaatggtcac
>TU212304
TCTTAAAgtaaccctcctcctcttctctctcctgttctccctgtgaAAGCAGAAGTTCTGCAGGCAGGCGAGAGGTCTGGAGTATATTGATGTGTCTCACTGTGTAGCTCTATCTGACCAGGCCATCAAGGCTCTGTCCTTCTACTGCAGGACTATAGTCACGTTACGCATGCCTGGCTGCCCAaagATGACAGACCTGGCGGTACAGTACTTGACAGTAGGGCGTCACTTCCTGAGAGAGCTGGATGTGAGTGGCTGTGTCCTGCTGACTGATCGCACACCACGCTTCTTACAGACAGGCTGCCCACAGCTCAACACCATCAACATGGTCTACTGCAGGGGAATATCCAAgcGGCTCTGAGGCTCCAGCCCTGTGTTGAGAAGTGGGAGCACAGTAACGATGACGCCCCCTACTGGTTCGGCTATGACAGTCTTGGCCAGCTGCTGCAGCCAATCGGACGACCCGACAAGATCCAGGACACCTGGGAAGAAGAGGAGCCAGCACCAAGAAACAACAAAAAGAGGAATTTGATAAAGGCCTGTGGAGAGGACTACGAATACACAgcatgaatacacacacagtcCATGCAGATAAACAAACGCACAACGACTTAgtttatacagtacacacacaccgcCTCACAATCTAAGGTAAATCAAATCCCTAACACATACACTGCACCTTACATTAACTCTAGCTCAGATATCAAGCAACGGGAAGGAATGGCCAAAGATTAATAACCAGAAAACAATATTTTGTATCTGAGAATCA

Function

symbol description
fbxl13 Orthologous to human FBXL13 (F-box and leucine rich repeat protein 13).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572820.2 False 4235 mRNA 0.45 21 77971844 78003571
TU212305 False 788 lncRNA 0.45 2 77996720 77999680
TU212304 True 772 lncRNA 0.49 3 78001956 78002905

Neighbor

gene id symbol gene type direction distance location
LOC100135906 LOC100135906 coding upstream 2800 77963501 ~ 77969044 (+)
LOC110502056 LOC106561330 coding upstream 89636 77838768 ~ 77882208 (+)
LOC110496763 dynlrb2 coding upstream 191049 77777066 ~ 77780795 (+)
nfat5a LOC106561332 coding upstream 255056 77697226 ~ 77716788 (+)
LOC110496661 LOC106561266 coding upstream 665378 77295087 ~ 77387938 (+)
LOC110502077 LOC106561326 coding downstream 43802 78047373 ~ 78066844 (+)
LOC110496871 LOC106561322 coding downstream 230332 78233903 ~ 78266800 (+)
LOC110496927 LOC106561319 coding downstream 344509 78348080 ~ 78352645 (+)
lrrc56 lrrc56 coding downstream 390537 78394108 ~ 78451563 (+)
LOC110496993 LOC106561317 coding downstream 464128 78467699 ~ 78519071 (+)
G187154 NA non-coding upstream 40197 77931363 ~ 77931647 (+)
G187151 NA non-coding upstream 41753 77929784 ~ 77930091 (+)
G187143 NA non-coding upstream 47991 77923652 ~ 77923853 (+)
G187138 NA non-coding upstream 54240 77917397 ~ 77917604 (+)
G187125 NA non-coding upstream 75690 77892824 ~ 77896154 (+)
G187221 tmm60 non-coding downstream 67671 78071242 ~ 78073026 (+)
G187222 NA non-coding downstream 69784 78073355 ~ 78073712 (+)
G187268 LOC106561324 non-coding downstream 144755 78148326 ~ 78152909 (+)
G187333 NA non-coding downstream 266905 78270476 ~ 78270781 (+)
LOC110502025 LOC106573403 other upstream 810994 76863449 ~ 77160850 (+)
G185718 NA other upstream 1139344 76830413 ~ 76832500 (+)
G185549 LOC106561235 other upstream 1364869 76534378 ~ 76606975 (+)
G185462 chkb other upstream 1537229 76433817 ~ 76434615 (+)
G187260 NA other downstream 133942 78137513 ~ 78177583 (+)
G187320 LOC106561323 other downstream 263718 78267289 ~ 78270045 (+)
LOC110497055 LOC106561315 other downstream 575801 78578149 ~ 78580190 (+)

Expression


Co-expression Network