LOC110496807 (LOC106561343)


Basic Information

Item Value
gene id LOC110496807
gene name LOC106561343
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78018660 ~ 78024454 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572831.2
tttagaaggggagagggggagagggggtgagataGACAGGGGGAGtgaaaatgaaagagagaggtTATGGGAAACAAAGATGCAAACTGAGAAGGAGAGTCAGGGGGATAAGGTAAGGAAGAAGGAGCTGGAGACTGAGAGAAAGcgtgagggggatagagagaaagaggaggagagagggaggggaaataGAGAAGAGATCCAGAAGAAGGAAGAAAATCAGGTggtgatagagagggagaggaagatggagaaggagaggcagagtcAACATCCTTGGCAAGGGAAGGAGATAAAgaatgagaaaaagaaagagagtgatcAAGACAAGAAAGAAAGTGATCAAGAAGAGCCCGGGAAGaagatagagaaagaggtagaaaaAACTGTCCAAAGTGTGCAGAGAGACAGCATAGGACCGCTGATGACAGATGATCAGGACACGACCTCACCCAGCCCAAGCAATGGTTTTAAACATGACTCAATCCCCAGACCTGACTCCTCAGGACCAGATCAAAAATCAAACTCCATCCCTAGACCTGCCACCAATCCCAGCCCAAGATCTAGCTCAGACACCAGCCGTGGATATATTTCAAGTCCTTCCTCCAGCTCAACCTCTAGCCCCAGATCTTCCTCCATCTCCAGCACAAGGACAAGCTCAAACCTTAACACAAGCTCCAGTCAAAGGACCATCTCCTCTTTACCTCACCAGGGAGCCACCAGGTCCGACCCCATCACAACCCCAAGTTCAGGCACCAGCTACAGGACTGCCAGAACCAGCCCAAGTATCACAACAAGCACAAACCAAACAACCACCAGCTCATCAAAAAGGACTACTAGCCCAAGAAACAGACCTGTCCAGAAGCACAAGCCCAACCAAGCTAAACAGGCCATCAGACCCAGACTTAAGTCCAGACCACCCAGTCCGACTAGCTCCTCCAGTTCAACGGCCAGCTTCACTAGCCTCAGCTCATGGACCACCACCACCAGCTCCAGCCCTGCATGGACaaggacaaaaaaaacaacaggaCTCAACACTAAACCTAAACTAAAACCTAAACCAGGCCAAAAGCCTATTCCAGGCCTAAGACCTAAACCTGGACCAAAACAAAGGCCTGTTCTAAAGCCCAGCCCAACCAGCTCGTCCAGCTTCAACTCTAAGACCACTCTCAGAACTGGCTCAACTTCAACCCCTACTTGTAGCCTTAACTCTGCAATCAGCTTTACAAGACCCAGTCTACAGTCCACTAAGACAAGTACCAGCCAAATCAGCACCATGCTGGGACACTCTTCAGCCACCACCACTAGTCCTAGCTCAAATATTACCAGCCCAAGCTACAGGACCACTAGTTCCAGCCCTGTGGCCAGCAGTAGCAGTAGCTCAACTCCAGGAACTAAAACCACTGCTAGACCTAGCCCAAGGAACACCAGTCCAAGCTCCAGAATTGGGTCCCGGTGGACCCCCAGACCTGACCTAAAGCCAAAACCAGGCACAAGGCCTATTCCAGGCCCCAGACCCAAACCTGGATCAAAACCAAAGCCTGTCCTGAAGCTCAGACCATCAAGTCCAACTGGCTCCTCCAGCTCCATTCCAGAGGCCAATCCCAGAACTGGTTCTCCTCCAGCCACCACCATTAACCTTAGCCCACAGACCATCAGTTCAAGCATCCAGGCCAGCACTTCCAGCTCAAGTTCAACTCCAGAAACAACAACCACCACAAGCCCCAGCCCAAGGACTGGCTTCACTTCTCTCAGCTTAAGGTCCACTAGTACTAGCTCCAGCCCTGAGAGGACATCTGTCCAAAACCCTGAACCCAACACAACGACTACCAGACCTAGGATTAAGCCCCAACCTGGCCTACAGCCCAGACCTGACCTACAGCCCAAACCCGGCCTAAAACCTGAACTACAGCCCAAACCAGGCCCAAAGCCTATTCCAGGCTTAAGGACTAAACCTAGACCACAATCAAAACTCATCTTAAAACCCAGACCACCCAGCCCAACCAGCTTTAATCCAAAGACCAGTAACATAAATGGTGCAACTTTAACCCCCACCACTAGCCTCAGCCCTGGGATCAGAAGCCACAGTCGTCAGACCATGACGACAAGCCAAAGTAGCACCACACCGGGCCACACTCCAGGCATCACCCCAAAGATAACTAACCCAAGTTACAAGACCACTAGTTCCGGCCCTGGGGCCAACCTCAGCAGTAGCACCACTAGCTCTAGCTCAAAGATCACCAGTTCAAGGATCTGGACAGGCTCTTTCAGCTCAAGCATCATCACACTAAACCAAACCAAAACCACCCCTAGCCCCAGCTCAATGACCAGCTTCACTAGCCTCAGCTCAAGGACCCCCAGTACCAGCATCAGTCCAGAGACAAATTCTGCACAACATCCTGAACCCAGCTCAACAAGCATTAAGCCCAAACCTGGCCCAAAACCCAAACCAGACCAAAAGCTCAAGCCAGGCCCAAGCCCTATTCCAGGTCCAAGACATAAACCGGGACCAAAACTTAAACCTGTCCTGAAGCCCAGAACTGCTCCAAAGCCCTGGTCCAAAACCACCAGCCAAGGTCAAAGGACCACTTCTCCCACACCTAGCCCCAAGACATCTAGTACCTCAAGCCAAAGGACCACGACTGACCCCAGCCCACAAATGACCGCAATCCCTGGCTCAAGAACTACAAGACCTAACCAACAAACTACCCTCAGCTCTAGCTCAAAAAACATCTTTAACACTAGCCGGAAAACAACCACTAGCCCTGGCACAATTACCACTACTATTGCCAGTCTAAAACGTAAGACCAGCTCAAGCCAACAGATTAGCATAAACCCTAGCCCCAAAACTTCCACTACTAAACCCATCCCATTGGCCAACTCTAACCATAGTCCAACTACCACCAACCCTGAGTCCTCTACCCCCAGCCCCATACTTGAGTCTTCCGCCCCCAGTGTGAGAGAACTTAGTGTGAAGACCAGCCGGGTATCTGCTAGTCTGAATGACACAAAGGACACAAGTGGGCGAAAGGTTTTACAAGGAGGGCACCCAAAGGTCCTGCTCACAGAGAAGGACCAGGTAGGCAGCAAGACTGACAGAACAGGGAACCAGCCTCAAAACCCTGCACAGATTTCACCAGGAGTTACCATGGCACCCAGAGACTGCTCTGACCACATGGCCAAGGGGGAAAGGAACAGTGGGGTCTACCAAGTGACCCCTGACCCTAAGAATGTAACCATCGCAGTGTTCTGTGACATGGAGTCTCATGATGGAGGGTGGACCATCATTCAGCTCCGTCAGGACGGCAGTGTGAACTTCAACAGGACATGGGCTGAATACCGGACGGGCTTCGGTAACATGAGGGCTGGGGAGTTCTGGCTGGGCAATGACCACATCCATCTCCTGACCCGACACAGGGAGATGGTCCTCCGGGTGGAGCTGGAAGACTTTAACAGAGTGAGGGAGTACGCAGAGTACAGGCTCTTCCGTGTGGCTGGCGAACGGCTGCGGTACCGCCTGTCTGTGGGTGGGTACTCGGGCACGGCGGGAGATGCACTTCAATTCAGCAAGAgttacaaccacaacaacaggtTCTTTACGACTCCTGACAGGGACTATGACCGCTACCCTTCAGGGAACTGTGGGGCCTACTACAGCTCAGGCTGGTGGTTTGATGCCTGCATGGCTGCCAATCTCAACGGGAGATATTATGTGGGAAAGTACAAAGGGGTGAGGAACGGGATCTACTGGGGGACGTGGCATAATATATCTACAGAGTACTACCCAACAAATGACAGACAGTCTTTCAAGACTGTCAGAATGATGATCAGGCCGAGAGGCTATGCAAAGTGAGCTAAACAGCTGGCTCTTCGTTTGGCGTACTCAGCTGTTGCAATTGTCAAACAGCGGGGCTGGGAAACCCTATAAGGCCTCAGCAATTTTTCAATGGATCCGCGACATAAAcaggaaacatgtattttttGGGGAGGAGCACTGTTTATTAATGTGCAAATGCAGACATTCAGATTGTACTGCTGTTTCATATTTTGGGTGTTTATAGTGGTTGTTATTTAACAAGCAGTTTGAATATATTGTATCTTATTTACTCTTTGACATATTATAGTGGGTCAACACCTACATCTTCTTGATTTCTTGACACAGTTTTTTCCCCTAATCGCTTTGGTGTTATTTTCTCAAGAATGTGGTACATTTTCTACAATTTTTTAACAAAACTCCAAACTGCTAATACATATAACACAGCAAGTATTTTATTCAAAACCTTTTATTGTGCATTCATTTTGTTTGGAGACATCTTTCACCACACAACCTTTGAGCCAAAATATAAGTTTACAGTGAAATATCATGATAACATTGATTTAATCACCAAAATACAACATAATGATATCTTCTCAATTTAGTTGTTTTAACAACCAGTTAATTAAATAGAAAAATATGCAAGGTACATGGTCCAAAATTTCCCTTTGAATGTaatatgctacagtactgtaaattacagtacGTTACACTGTTTTAGCAGAAGGTAATACATTTGCACTACCCATCACAATTGACAAAAAATCGAATTTCCATCATTTCTATCCAATGTGTGATCAAAAGTGTGATCAACTTTCAAAATCATTGatgcaaaaaataaatatattgttCAGATACAATTACAacatgaactcagcaaaaaaagaaactctttttcaggaccctgtcttttaaaacataattcgt

Function

NR:

description
mucin-5AC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572831.2 True 4741 mRNA 0.48 2 78018660 78024454

Neighbor

gene id symbol gene type direction distance location
LOC110496798 NA coding downstream 19026 77986595 ~ 77999634 (-)
LOC110496780 LOC106561328 coding downstream 102676 77892823 ~ 77915984 (-)
LOC110502034 NA coding downstream 218545 77798150 ~ 77800327 (-)
LOC110496772 NA coding downstream 225706 77789233 ~ 77792954 (-)
LOC110496728 LOC100194665 coding downstream 254257 77760727 ~ 77764403 (-)
LOC110496818 tmm60 coding upstream 47270 78071317 ~ 78079168 (-)
LOC110496836 LOC100286559 coding upstream 55039 78079493 ~ 78103276 (-)
LOC118942057 NA coding upstream 105123 78129577 ~ 78142468 (-)
LOC110496855 LOC106561324 coding upstream 126679 78151133 ~ 78218616 (-)
LOC110496900 LOC106561323 coding upstream 242617 78267071 ~ 78270220 (-)
G187708 NA non-coding downstream 89402 77929050 ~ 77929258 (-)
G187687 NA non-coding downstream 137116 77881000 ~ 77881544 (-)
G187667 NA non-coding downstream 177747 77840507 ~ 77840913 (-)
G187635 NA non-coding downstream 237812 77777106 ~ 77780848 (-)
G187767 NA non-coding upstream 51685 78076139 ~ 78076386 (-)
G187809 NA non-coding upstream 113814 78138268 ~ 78197273 (-)
G187880 NA non-coding upstream 271366 78295820 ~ 78296236 (-)
LOC110496911 LOC106561320 non-coding upstream 278720 78301573 ~ 78344271 (-)
G187579 LOC106561332 other downstream 315171 77702899 ~ 77703489 (-)
G187490 NA other downstream 547563 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 847021 77166074 ~ 77171661 (-)
si:dkey-234i14.6 LOC106561240 other downstream 1694770 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 1725268 76273524 ~ 76293392 (-)
G188257 NA other upstream 592128 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 1198776 79223230 ~ 79224998 (-)
G189256 NA other upstream 1341395 79365849 ~ 79366569 (-)
G189806 NA other upstream 1735585 79760039 ~ 79760627 (-)
G190857 NA other upstream 2527673 80552127 ~ 80552484 (-)

Expression


Co-expression Network