LOC110496836 (LOC100286559)


Basic Information

Item Value
gene id LOC110496836
gene name LOC100286559
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78079493 ~ 78103276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110496836
tgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgagATGTTGGATGGACTCCGTCGGCGGCACGGCTCTCGCCCCTCCCCCAGGCCCCTGTCACTCAACTTCACCACCTTCTCAGCCCCGCCCCCAAGCCATGATGTGGACAATAGCGATCATCCAATCAGGAGAACTCTACACAGGCTGAAGTTGATGAGCTCTCCCAGTCTTAGTGAGCTAGGAAAGAGTGAGAAGGGATCaccggaggagagaggagagaaacagaagagggCTGGGGCCAACTCTACCTGGAACAGCATCCACAATGCTGTCATTGCCGTCTTCCAGAAGAAAGGTCTGGCTGACAATGAACTCTATGTCCTCAACGAAGGTGTCAGGCACCTATTGAAAACAGAGCTGGGGTCGTTTTTCACAGAATACCTTCAGAACCAGTTGCTGACAAAGGGCATGGTCATTCTCCGGGACAAAATAAGATTCTACGAAGGTCAGAAGTTACTGGACTCTCTGGCAGAGACATGGGACTTTTTCTTCTGTGATGTTCTCAACATGCTACAGGCCATATTTCACCCAGTACAGGGTAAGGAGCCCAGTGTGAGACAGCTGGCTCTGCTCCATTTCAGGAACACCATAGTTCTGAGTGTGAAGCTGGAGGATGCTCTGTCTCGGCCTCGCGCCCGCATTCCCCCCTCTGTCACGCAAATGCTGCTTATGCTGCAGggtgtCCATGAGTCGCGGGGTGTGAGTGAGGACTACCTGCGTCTGGAGTCTCTGGTCCAGAGGGTGGTCTCTCCTTACCTGGGCACCCACGGCCTCTACTCTGGAGACGGCAGCGTGGCACATTGCTCCTGTGTGCTTGAGAatcgtttccagtggtgctggccTAAGCAGCCTGTAGACCAGCCATCTAAGAACCCTGTGGTTCGTTCTAAGAGTTACAACATCCCTCTCCTCCTGACGCCCGTGGCAGAGTACGACCCTGATGCCAGCTCGGTGGGCAGCGGGGGCATTCGACGCCACTCTGCCTGTGAGATAATCTCCTGCCTAGAGGAACAAGGCCTGGCCTACACCGACATTGCCTCTGGAATTGACCCATCCACTTCCAGCGCCTCTGCTAACAGGCTCTGTGTGGTTCCACAGTCCACAGGAACTAtggagtctcctctcctctcccccttaatcccccctctccactccccagGACCCCTCTACAGGACGGAGGTAACAATGACCCTCACAGACATGGTCAATGgtgccccctcctctccccccagtGGATCTTCCAGCCCAGAGACCATCATTGGACAGGTGCTGGAGTCCCTGGACACAGATTTAGATGGGATATTCATAGAATTCCCACCCTGCTGCTCGGAGTCAGTGGGATATGGTCGGGAGAGCAGGCAGAGCACTGCGTAGAGAGGGAATCATGGGTAGAAGGTGCGCCTTAGGCACACGAGTAGGATCAGCTTGTCCTCCCCAAATATCTTAGCTTAGACATTGGAGGGAAGTCTTTAGGCTAGAGGCAACCTCATCCTTATAAGGATTTTGTGGCTAAGTGCACTCCATACTCCTCTCCACAAGATACCTATTTTTAGTCAGCATTTCCTTGGAGAAGAAAAAACAAACTTTTCTAAGCATTTGATTCGATCTGATAATGTCTGCATTTTTTGggatgtgttttgtgtgttttgaaACTTAACTCTCACCACTATGATGCCATAACCTGTGGGCATTTGGATGTTGGCCCTTTGATTGTGTCTGGGTTTTCTACAAAGCTTGGGAGAACTGCAGTTACCCGAAAGTCTTTTGGAGTAAATAGAGTATGTGAATATGATTTGGTCACATCTTGCTCCTCATTCTAAGAACCTGCGTAGTCCAGTATGTATTAACCTGGCTTGTCCCATCTGTatgttccctctcccctctgtgttTTTTCACTGTCATGCCAAACATGTATGGAGTGAAAATGATAGTCAGAGGAGATGGCTAAAATACATCTGGGACCGGTCTATCATCCTCTTTTCAAAGGTCATTAAGCAGTCATGTTATGATTTACTTAATAATTACATTTCATCGTTTGTTTACTGTTTACATAGGAAGAGAAAATAAGGGTTTAATGATATTGAATGTTGTATCATTCACTGTGTTGTGCGgcacttcaactgtaaatacatttttgttttttagGACAGCTAGATATTGTGAAGTAAGCTTTTTAACTTAACTTGTGACTTCAATAAGGCCTTTTTAACTGAAGCTATTTTTATGATGTTTTACCTCAACCGTTTTTGTATACtttgctttttttattttttatctgtaaTTAGAAGTTTTTATCCGTGATTGTAAATTATCATTAATTTGTGATATCAGATTTTAATAAAAATTTCAGTGGCTAAGTA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: proline-rich protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110496836 True 2412 mRNA 0.48 11 78079493 78103276

Neighbor

gene id symbol gene type direction distance location
LOC110496818 tmm60 coding downstream 325 78071317 ~ 78079168 (-)
LOC110502067 LOC106561342 coding downstream 54111 78024407 ~ 78025382 (-)
LOC110496807 LOC106561343 coding downstream 55039 78018660 ~ 78024454 (-)
LOC110496798 NA coding downstream 79859 77986595 ~ 77999634 (-)
LOC110496780 LOC106561328 coding downstream 163509 77892823 ~ 77915984 (-)
LOC118942057 NA coding upstream 26301 78129577 ~ 78142468 (-)
LOC110496855 LOC106561324 coding upstream 47857 78151133 ~ 78218616 (-)
LOC110496900 LOC106561323 coding upstream 163795 78267071 ~ 78270220 (-)
LOC110496911 LOC106561320 coding upstream 198297 78301573 ~ 78344271 (-)
LOC110496976 hras coding upstream 262840 78366116 ~ 78393964 (-)
G187767 NA non-coding downstream 3107 78076139 ~ 78076386 (-)
G187708 NA non-coding downstream 150235 77929050 ~ 77929258 (-)
G187687 NA non-coding downstream 197949 77881000 ~ 77881544 (-)
G187667 NA non-coding downstream 238580 77840507 ~ 77840913 (-)
G187809 NA non-coding upstream 34992 78138268 ~ 78197273 (-)
G187880 NA non-coding upstream 192544 78295820 ~ 78296236 (-)
G188067 LOC106561319 non-coding upstream 246704 78349980 ~ 78353910 (-)
G188108 NA non-coding upstream 268583 78371859 ~ 78372265 (-)
G187579 LOC106561332 other downstream 376004 77702899 ~ 77703489 (-)
G187490 NA other downstream 608396 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 907854 77166074 ~ 77171661 (-)
si:dkey-234i14.6 LOC106561240 other downstream 1755603 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 1786101 76273524 ~ 76293392 (-)
G188257 NA other upstream 513306 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 1119954 79223230 ~ 79224998 (-)
G189256 NA other upstream 1262573 79365849 ~ 79366569 (-)
G189806 NA other upstream 1656763 79760039 ~ 79760627 (-)
G190857 NA other upstream 2448851 80552127 ~ 80552484 (-)

Expression


Co-expression Network