LOC118942057


Basic Information

Item Value
gene id LOC118942057
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78129577 ~ 78142468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956120.1
TCTGATCATTTTAATTGAACACAATCACAGTAAGGCACtttattgttacccagaaataatttgatattgagatgaaaacggctgcattggacctttaaatatAAACATATCGGTCTAAACTCGCCGTGCTTGAATGAGAACGTTTATCTCATCCACCCTACAACACCAGACACCAATACGCGCGTACACGCTCACAGACGCAAAACACGCACGGCGTCTGGTACAGTGGATTGCACCTCGTCAAAACAACACGGGGGCGAGCATGCATGCTCCTGGAATGACTCCCGCAGGATAGGTCGCTGGCGCATCGCACAACTGCACCAAAATGCCTGTTTGGTCAGTGCAGACTGAAAAACCAACAATGATATAGACTATGGGTTTTATTGCAGATAGGCTATACAGTTGATCAATGCTATATCCACCTCATTATATTATAAGCAACACGATCAGGAGAAGGAACGttgagtttgagggcctcATTCCAACAAAGATTCCTGATCTACCCCCTTTAACTGAAGTCACAGTGGCAACACTATTTGAGGAAATAGAGAACCAGTGGGTGGTCTCTGACTTTTTAGACATCAGTCTATCAGATGAGAAATCAATtgccaatgatgatgatgatgaagattatCATCCACCTTCAGAGTTGGATGTTCCAGCACAAGTGGCAGCTCGGCCCGTGGACACAACTCTAGACAACCTATCAAACAAGAAATCCAAGATTCCACCAATGGGTAAGCCATGTGGTCCCAAATGCAAGAGGCAAAGTAGTCAGAATATTTCAGAGGGTAGGCAAAAGGTAATATGGGAAAAGTATTGGGAGATGAAGTATAAGGAGAAGAGGACATGGATCTTTCACATGGTGGCACAGCAATCTAAGGAAAATATCACTGTTGGCGCTGACAGTCGGTTTGGAAGATGGTTTCTGTACCACCTTCTGTAACACCTCAAAAATGACAGGCTGATTGTCACAATGATGGGCAAGTCAATCACCACCAAACTGATTCCACCAAAGGATCAGAGGGGAAAGAAAGCTTCAGCGAGCAAATTGAACATGAATCCAATCCTGCACACATTGAGTCCTTCCATCCCCAAATCAGCCACTACAGACGAGAGCATGCCCCTCTACCTCCCTAGTGACGTCAATATACGGTTCATGCATAATGACTACAAGGAAAAGAACAAAGATGCCAGCTGCGGTTACGAAACTTATTGCAAGGCGGTAAAGGGAAGGAACATCAGCTTTGTGAAGCTTGGAGAAGAGGAGTGAGAGCTCTGTTTGGTGCAGGGTCATCATCCTTACGATGGAGCACAGGAAGAATGAGGCCATGGAAACCCAAGCCTGCCAAGACAACAGCCATGCAGCACTTGAATTCACCATCCCCAACCCCGACTGCTTGCAATGTAGGAAATATGAGGAGTATAAGAAGtctgcagagcagagcagaagccATTACCAGGCTGATGCACAGAAAGATTGGCCTGAGGACTGGTCTGTGAGGAGCGTTGATATGCAAAAAGTCATCATGCTCACTCGCATGAGAGGTGTGAAAACAGCATTGTTCACAAGAATCGTTGCCTATCACGAGACATTCGCTATCATGGGAAAGAAGTCTCAAAGGAAGAAGAAAACAATCTCAGTGGTATGGCATGAAGGAACAGCTGGTCGGAAAGCAGAGGAGATTACTTCATCTTACGTAACAgcactggagagggagagagatgtcaaGCATGCAGGGTATTGGGTGGATaactgcacttcacaaaacaaaAACTGGTGCCTCCTAACATCACTGGTGAGTGTTGTCAATGCTGACTCAACTTTGATGGAGGACATCACCCTCAAGTTCCTCGAGCCAGGACACACCTTCATGAGTGCAGACAGTTTCCACCATGGCGTGGAACAGGAAATGAAAGCTCGACCTGGAGGTGTGGTGTACGACTTCGGGGACTTCCTCCATGTGGCTGCAACTTCCAATGCAGGCAAGAGCACTGAAGAGCACTGAAGAAGTTTTACTTAAAAATGAAATGTTACATAAAAATGAAATGTAACTATTCAGCATTTTATCAATTGTAGATAAATGTAATTTGCATCCTCTTATGAATATGAACGTGAATATGTTTAAAATGTATTCTTAAAGCtgtcatttatttattcattcaaaAGTGTCatttgaaaaaatacaaataaaatgttttt

Function

NR:

description
uncharacterized protein LOC110513524

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956120.1 True 2203 mRNA 0.44 2 78129577 78142468

Neighbor

gene id symbol gene type direction distance location
LOC110496836 LOC100286559 coding downstream 26301 78079493 ~ 78103276 (-)
LOC110496818 tmm60 coding downstream 50409 78071317 ~ 78079168 (-)
LOC110502067 LOC106561342 coding downstream 104195 78024407 ~ 78025382 (-)
LOC110496807 LOC106561343 coding downstream 105123 78018660 ~ 78024454 (-)
LOC110496798 NA coding downstream 129943 77986595 ~ 77999634 (-)
LOC110496855 LOC106561324 coding upstream 8665 78151133 ~ 78218616 (-)
LOC110496900 LOC106561323 coding upstream 124603 78267071 ~ 78270220 (-)
LOC110496911 LOC106561320 coding upstream 159105 78301573 ~ 78344271 (-)
LOC110496976 hras coding upstream 223648 78366116 ~ 78393964 (-)
LOC110497044 irf7b coding upstream 418510 78560978 ~ 78565956 (-)
G187767 NA non-coding downstream 53191 78076139 ~ 78076386 (-)
G187708 NA non-coding downstream 200319 77929050 ~ 77929258 (-)
G187687 NA non-coding downstream 248033 77881000 ~ 77881544 (-)
G187667 NA non-coding downstream 288664 77840507 ~ 77840913 (-)
G187880 NA non-coding upstream 153352 78295820 ~ 78296236 (-)
G188067 LOC106561319 non-coding upstream 207512 78349980 ~ 78353910 (-)
G188108 NA non-coding upstream 229391 78371859 ~ 78372265 (-)
G188210 NA non-coding upstream 392052 78534520 ~ 78534808 (-)
G187579 LOC106561332 other downstream 426088 77702899 ~ 77703489 (-)
G187490 NA other downstream 658480 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 957938 77166074 ~ 77171661 (-)
si:dkey-234i14.6 LOC106561240 other downstream 1805687 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 1836185 76273524 ~ 76293392 (-)
G188257 NA other upstream 474114 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 1080762 79223230 ~ 79224998 (-)
G189256 NA other upstream 1223381 79365849 ~ 79366569 (-)
G189806 NA other upstream 1617571 79760039 ~ 79760627 (-)
G190857 NA other upstream 2409659 80552127 ~ 80552484 (-)

Expression


Co-expression Network