LOC110496900 (LOC106561323)


Basic Information

Item Value
gene id LOC110496900
gene name LOC106561323
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78267071 ~ 78270220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572919.2
TATGTGTAACATGTCTAACTTTTTAATATTTGTGTTGTTAATTTGGACCTATTACATTTATTACGTTTTCTCGTATTAATGTCAGTCGTTTATGTGAATTGTTTTTGTACCCCCCAAAGCAAGGAAGTGCTGCTGACTGTTTCTGCGTAGCAAGCTAGTTTGAAATGGTTGGTCAGACAAAGGCAGCACAGGAAGAATCCCACAACAGAACCGAAATGCTAATAGAAACGTATTTTAATCGATGACACAGAAGAAACAGAGACTGCGGTTTTCATCAATACATTTCTACTTTTTGTTTTGAAAATGAACGACCGACTGGATCCGTTTGAAGAACGACAGCGGTCATCTGACTTGAAATTGGGTAGAGTCGCCTGACCGTCACTGTTTTCCGCCTTTAAGtacgctaactaacgttagctatcccAAGTTTTTGTAggacgtagctagctagctatctcatTTGATTAGAATAATTATAACCTAGCTATTATAACACAACCTCCACACTTCTTGTTGGATATGCATTATGAAGAGATGGTTGGACTTTGAACAGGTTATTTTCCTGAGTAACATTacctaatttagctagctaacagttagcTAGCCTACTCGAATAAGCGGATACCTGGTTAGTTTTATCTAACCTCTCCCTTTCCAAACATGTTTGAAATGGAAACGCACATATCTGGCCTCTTCCCGGAAATTTTAGCTATAATTTTCAGTTACTTGGACGTAAGGGACAAAGGTAGGGTTGCCCAAGTGTGTGCGGCCTGGAGGGACGCTTCGTATCACAAGTCTGTGTGGAGGGGGGTGGAAGCGAAGTTGCATCTGCGGAGGGCCAACCCGTCCCTGTTCCCCAGCCTCCATACCCGAGGCATTAGGAAGGTCCAGATCCTAAGCTTGCGACGAAGCCTAAGCTATGTAATCCAGGGGCTGCCAAACATCGAAAGCCTTAACCTATGTGGCTGTTTTAACCTCACGGACAACGGCCTCGGACATGCGTTTATTCAAGACATCCCGTCCTTGCGAATCCTCAACCTCAGCCTTTGCAAACCAATCACAGACTCAAGCCTGGGTAGGATTGCCCAGTATCTCAAAAACCTGGAGGTGCTGGAACTTGGAGGCCTCAGTAACATCACCAACACAGGCCTTCTTCTCATTGCCTGGGGCTTGCACAAACTCAAGAGCCTTAACCTGCGGAGCTGCAGGCATGTGTCAGACGTCGGCATTGGTCACCTGGCTGGGATGACCCGAAGCGCTGCCGAAGGCTGCCTTTCCCTGGAGCAGATGACACTACAGGACTGCCAGAAACTGACAGACCTGTCCCTCAAACACGTCTCCAAGGGACTAGCCAAGCTCAAGGTGCTCAACCTCAGCTTCTGCGGAGGCATATCGGATGCAGGTATGATCCATCTGTCGAACATGAATCACCTGTCAAGCATCAACCTGCGGTCCTGTGACAACATCAGTGACATGGGCATCATGCACCTGGCCATGGGGTCTCTGCAGCTCTCTGGCCTGGACGTTTCCTTCTGCGACAAGATAGGTGACCAGAGCCTGGCCTACATCGCCCAGGGGCTGTACCAGCTCAAGTCTCTGTCCCTGTGCTCCTGCCACATCAGTGACGACGGGATCAACCGGATGGTGCGCCAGATGCACGAGCTCAAGACGCTGAACATTGGGCAGTGTGTACGCATCACTGACAAGGGGCTGGAGCTGATTGCTGACCACCTGACGCAGCTCACTGGTATCGACCTGTATGGGTGTACCAAAATCACCAAGCGGGGCCTGGAGAGGATAACGCAGCTCCCGTGCCTTAAAGTTTTAAACCTGGGACTCTGGCAGATGACGGAGAGTGAGAAAGTTAGGTGAAAGCCAAACTGGGATGAACTGCCAAGTGGGGTTTTCACTGTAATATTTTTCATCCACAGAGATTACCTGAGCGGAACAGCTCGTAGACTATTACATTATCTTTAATAGCTACAATACTGTGACTTAATTTTAGCAGAAGGAAACACTTTTTAAACATTCACTGTCACAGCAATATTCCACCCCTTATTTTGGTAAAATTGCTTTCTTATTTCAGTGTTAACTATCCTGTCCCTGTATCACATCTATAAGGTTTTGACTAGCTACCTCATCCATTCAAGAAACTGTACTGTCTGGGacacaaccacactacacagCATCTTTCCATGCAAAACAAACTCATTTTTAAACTTTCCCTTTAACTGTTTACCAGTATTGATGATAGACATGACTCATGCAAAATATCTCTGTTCAAACACAGTCCCTAACACTGCACAAAGGCGTTAAGGCCTTGGATTGAAGGTGTGAGCAGGGGATTTCTTCAGCTGAAGTATTTTGCTTATGTTGATGAAGGTATTTTTTATGAATGGCTGTAGTCCAGAACATTGTACTTCAAATTgaagtgttttgttttttaattgGTAGTTCCCATTCCTGAGGAGTTACACTGTATCAAACATTGTAATATGCCTTACTCCAGCTTGTCAACATGAACAGTGTGGATATGACAGGGGTAAACTGCCTTTTCCTCCTGGGGACTTTAGAATGGAGAGTGGAAATAGACTTTGGGCTCAATTCAATCTTTATCGCGGAAGTTGTTACAGCATGATTGAAATTTCAAGGCACTGTTCCCACGTtagtggagactgcattcacggtaaacgctgcaaaTGTCGGCGCAATCGGAAATAACCTTTAAATCTTTTAGCAATTTAATGCTTCAGCGATAGATTGAATAAAGCCCTTTATCTTGTCCGTGGTTATCAAGAATATGTATTTCTGTATGCAACATATCAATAACCTACATATTTTCTCCTGTAAAGCCTCCAAGGAAAGATATTGGAGTGTTAAGGCTAATTTAAAATGTTTATATTCATACAATAGTGATATTTATTAATAAAAACGCACAATGTTTATTGGGGGGAAATTCTTTAATTTGAGTTCTGTCGTCCAGTAAGTGGTTTACCTATTGTAAAAACAAGGCAGAAGGTGCAGGGTGTTGAACATTATTGCTCTATTATATGCCTGGTCCAGAAACAATTATGACCAGATTGACTATAGGTTTGAGATTGCACAACCAGTTTGACAAAATTGGGCCACTCTGTTTCTATCCCCTTTGTG

Function

NR:

description
F-box/LRR-repeat protein 14-like

GO:

id name namespace
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG:

id description
K10280 FBXL14; F-box and leucine-rich repeat protein 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572919.2 True 3150 mRNA 0.44 1 78267071 78270220

Neighbor

gene id symbol gene type direction distance location
LOC110496855 LOC106561324 coding downstream 48455 78151133 ~ 78218616 (-)
LOC118942057 NA coding downstream 124603 78129577 ~ 78142468 (-)
LOC110496836 LOC100286559 coding downstream 163795 78079493 ~ 78103276 (-)
LOC110496818 tmm60 coding downstream 187903 78071317 ~ 78079168 (-)
LOC110502067 LOC106561342 coding downstream 241689 78024407 ~ 78025382 (-)
LOC110496911 LOC106561320 coding upstream 31353 78301573 ~ 78344271 (-)
LOC110496976 hras coding upstream 95896 78366116 ~ 78393964 (-)
LOC110497044 irf7b coding upstream 290758 78560978 ~ 78565956 (-)
LOC110497066 LOC106561314 coding upstream 440678 78710898 ~ 78853465 (-)
LOC110497088 trim44 coding upstream 656231 78926451 ~ 78998262 (-)
G187809 NA non-coding downstream 69798 78138268 ~ 78197273 (-)
G187767 NA non-coding downstream 190685 78076139 ~ 78076386 (-)
G187708 NA non-coding downstream 337813 77929050 ~ 77929258 (-)
G187687 NA non-coding downstream 385527 77881000 ~ 77881544 (-)
G187880 NA non-coding upstream 25600 78295820 ~ 78296236 (-)
G188067 LOC106561319 non-coding upstream 79760 78349980 ~ 78353910 (-)
G188108 NA non-coding upstream 101639 78371859 ~ 78372265 (-)
G188210 NA non-coding upstream 264300 78534520 ~ 78534808 (-)
G187579 LOC106561332 other downstream 563582 77702899 ~ 77703489 (-)
G187490 NA other downstream 795974 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 1095432 77166074 ~ 77171661 (-)
si:dkey-234i14.6 LOC106561240 other downstream 1943181 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 1973679 76273524 ~ 76293392 (-)
G188257 NA other upstream 346362 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 953010 79223230 ~ 79224998 (-)
G189256 NA other upstream 1095629 79365849 ~ 79366569 (-)
G189806 NA other upstream 1489819 79760039 ~ 79760627 (-)
G190857 NA other upstream 2281907 80552127 ~ 80552484 (-)

Expression


Co-expression Network