LOC110497044 (irf7b)


Basic Information

Item Value
gene id LOC110497044
gene name irf7b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 78560978 ~ 78565956 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956322.1
tccaggGGAACTCCCTCTATCTGACATCACGACGCCTATAAAAATATTGTGCCAATGTACCTGGAAATAATTAGAAGAACGCGTAGTAGTACACTTCCATTGTATGACAGAAGTACGTGGCTCAGCATTAAAGATGCAAAGCCGCAACCCCAAACCTCAGTTTGCGGACTGGCTGATAGAACAGGTGTGGACCGGGCAATACGCCGGGTTGTGTTTTGTGGACAACAACAAGTTCAGAGTCCCGTGGAAACACATCTCTAGGAAGGACTGCTGCGAGGACGACAGTAAAATATTCAGGGCATGGGCAGTGGTCAGTGGTAAAATCAACACGCATCCCAATGACAAGGCAAAGTGGAAGACTAACTTCCGCTGTGTACTGAACAACCTGACCAAGCGTTTCATGATGGTGGAAGACCACTCCAAGGACTCAGACGACCCCCATAAAGTCTACCTGATTATCAACAATGAGTCTAACTATGGAAGCCCACACATAGAGGAAATTGCTGTGGAGGACTATGACATTGACATCCACAGCTCTCTCACCTCTACAGGCTACACCCCCCCAGGCATGGAGcATGATAATCTACTCAAGCTTGTGAACACCATAGACCTGAACCAACATACTGAGGAGTGGGCAGagacctatatacacacacaccacccagtgGTACCAGAAGACTGCTACCCCTTCCAGCCTCTAACAGAGCCCCAGCCAGTCTCCCAGAACCACTCACCGCcaccagtcccagtcccagtacaGCAGCCATACGACCACGTGAACCAGGATGCCCTGCTCAACCTGCCTGCTGCCCAGCCGTCTCTCTGTGACCTGGAGATCACCATCtcctacaggaggagagagatgctGAAGACCCAGGTGTCAGGCCCCATGGTTCAGCTCCACTACCAGTGTGATGTCCCTGAGCCCAACGCCCAGACCCTCTGCTTCCCTAGCACTGACGGCCTGCTAGACCACAAACAGATTGAATACACCAACTGCATCCTAGAGAGTGTCCAAAGGGGTCTTCTCCTGGAGGTACGAAACACGGGTATCTATGGTTACCGGCAGGACAAATGCCATGTGTTCTCTAGTACTAGTGACCCCAGAGAGGCACACCCTGAACCCAGGAAGATGCCCCAAAATGAAATGGTACAACTGTTGAGCTTCGACAAGTACATGACTGAGCTGATAGCATTtaaggagaacagaggaggctcTCCTGACTATACCATCCACATGTGCTTTGGCGAGAAGTTCCCAGACGGAAAACCCCTGGAGAAGAAACTCATCATTGTCAAGGTGGTTCCCTTGATCTGTCGTCACTTCCACGAGATGGCCCAGGGGGAGGGGGCATCTTCCCTCCAGAACGACAACATCAGCCTGCAGATCTCCCACCACAACAGCCTGATGGAGCTTATCAGTGCCACCTGGCCCGACGGCCCAGAGCACACCATGGGGCAATACTTCTAGACCACCAATCGTACCACAACCCCACCCAGCCACTTAGCACCTATCTAGGATTGGTACCACATCCCCACATCCCCACCAACCCACCCAGCCTATCTAGGACTAGTACTAAATAgacctctgggtctgtcccaatCATGCACTTTGGGCCTATCCCAAATTGGTCCTATGGTTGTGTCCCTAACCCTGGTTGTGTTACTTTACTGTACTTCTAGACCAGGAATGGTATCTAATAGACCTCAGCTAGGTCTTGTTTATTTAACTGGTCCATTACTCTACTGAGCTATATCACTAATTTAATATTCCCTCAGgaaaaacatttttacaaaaagTAAATGATCTGATCTGTAATTATATGTACAATATAATGTACAATTCAAATGTGTAGATATTTGAAAGTGTCAATTTCTTCAACAATTGATCAGGTCTATATAATTATCAAACATACATTAGTAATGGAACGGAAAAACAGACTCTTTGTTTAAGTATTAAAAAAATATTCCTTTAGTAACACAATTTGTAGGCAGAAGTTGGTATACGgactacagtataacagtatatgaTAGTTTCTCACCCAAGTTCTGCAAAATGTCTAAGACATCCTGTAACTCATATAGCCTCCCCAATCCCCCTGACATAACTTTCCCTAacaacaacattttaataaatctaACCTCACCCTGACAGCAGGAACCGTCTTATCAGCAAGTAAAAACTCAGAAGTGGGTTTGACCGAAACTTGACCTTTCATCACAAGTATAGGTCATGACAAGGTGAACGAGTAAGCATCTTCTGACAGGGGActggtttcatcaggtctgtGACAGCCTTGTGTTCTCAGAAAGCCAGTAAACCACGGTGGGATCCAGACAGGAGGAGTCTGAATTTAGACTCCTTCTGATAGTGTCTGAAGCTCACAACACTCAAAACAGGTtttaacagacacacagaggtctCCTGAAGAGGAGACCTTACATTTTATCATAACATCATTTATTAACCCTTTTAAAGGTATAAGGCCTTGGTTTAACCCTCTTTAAAAGTCAGACAAATGTTGATAGTGTTACATTATTCTGATGATGAATCTATGTATCATATTGCTATCAGTGTGTAATGCACTAGGCGAGGCCATCCTTCTCTTGTTAGGTTAACAGAGAATATGGCATTGTAACTGTTTTATTACTGTTTTACAATTGTTTGTGGGATAGGTATTTTATAAGTGAAAATCAAATCACCGTCTCAGCCTGTCTGTATTGAGTGTCTCATTTAGTGGTCTGTTCTCTTCTACTGAAGAATTCCCAGCTTCTGTCCCTATGGGTCACACTTTAAACCTGTCTTGGTCGCTCAATCCTTCAGTCTGTGTTCTCTATTATTATTTTGTCTtgagaaaatgtattttattgtattgaaACTGAGCAAACAACTATTTTATTGTCATTGAACAGCACATTGTATAGTATGCAAAATAGGACCAATAAACTATTTTATTAGGTCAA

Function

NR:

description
interferon regulatory factor 3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09447 IRF7; interferon regulatory factor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956322.1 True 2964 mRNA 0.45 10 78560978 78565956

Neighbor

gene id symbol gene type direction distance location
LOC110496976 hras coding downstream 167014 78366116 ~ 78393964 (-)
LOC110496911 LOC106561320 coding downstream 219402 78301573 ~ 78344271 (-)
LOC110496900 LOC106561323 coding downstream 290758 78267071 ~ 78270220 (-)
LOC110496855 LOC106561324 coding downstream 342362 78151133 ~ 78218616 (-)
LOC118942057 NA coding downstream 418510 78129577 ~ 78142468 (-)
LOC110497066 LOC106561314 coding upstream 144942 78710898 ~ 78853465 (-)
LOC110497088 trim44 coding upstream 360495 78926451 ~ 78998262 (-)
LOC110497116 fjx1 coding upstream 481476 79047432 ~ 79049962 (-)
LOC110502122 LOC106561308 coding upstream 677656 79243612 ~ 79276976 (-)
LOC110502133 pdhx coding upstream 738360 79304316 ~ 79350048 (-)
G188210 NA non-coding downstream 26170 78534520 ~ 78534808 (-)
G188108 NA non-coding downstream 188713 78371859 ~ 78372265 (-)
G188067 LOC106561319 non-coding downstream 207068 78349980 ~ 78353910 (-)
G187880 NA non-coding downstream 264742 78295820 ~ 78296236 (-)
G188238 LOC106561315 non-coding upstream 12461 78578417 ~ 78580141 (-)
G188240 NA non-coding upstream 18464 78584420 ~ 78585120 (-)
G188283 LOC105030512 non-coding upstream 68639 78634595 ~ 78634833 (-)
G188295 NA non-coding upstream 77295 78643251 ~ 78643460 (-)
G188308 NA non-coding upstream 84466 78650422 ~ 78651149 (-)
G187579 LOC106561332 other downstream 857489 77702899 ~ 77703489 (-)
G187490 NA other downstream 1089881 77470393 ~ 77471675 (-)
LOC110496628 rabl2b other downstream 1389339 77166074 ~ 77171661 (-)
si:dkey-234i14.6 LOC106561240 other downstream 2237088 76321757 ~ 76341834 (-)
G186197 LOC106561241 other downstream 2267586 76273524 ~ 76293392 (-)
G188257 NA other upstream 50626 78616582 ~ 78617307 (-)
G189093 slc1a2 other upstream 657274 79223230 ~ 79224998 (-)
G189256 NA other upstream 799893 79365849 ~ 79366569 (-)
G189806 NA other upstream 1194083 79760039 ~ 79760627 (-)
G190857 NA other upstream 1986171 80552127 ~ 80552484 (-)

Expression


Co-expression Network