LOC110497132 (pamr1)


Basic Information

Item Value
gene id LOC110497132
gene name pamr1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79103574 ~ 79151359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573107.2
ggaagagacaaattcagagagtgagggaaggaaagagagagggagggagaaagagaaagcaacagagggagagagaaagagaaagagtgtgaTGTCAAACCAGCTGAGCTCAGAAAGTAAACAGAGCTCCAGACTGCAGCATGCTTTCTGCGGTACGGGGACTGCAGCTGGGGGAAAGCCACGGGGGGACCCCTACGCTCCCTCACACAGGCATCCACCACTCCCCCGGGACCCGTGGATCTTCCCTCTTCATcactctcttcatcctcatctcCCTGTACCAGGGGCTAGCATGGCCCTACGACTACAGGTACCTATATAACCAGTGTCCGGGCCCAGAGTGGAACGTCATGTGTCGGGGCTGCTGTGAGTACGACGTGATCCGCTGTAAGTGTCCCCTCCAAGGCACCCCCGTTGGCTACGCTGTGCCTTGCTGCCGCAACGCCCTCAACGAGTGTGACCCCTGCATCATCCACCCAGgTTGCAGCATATTTGAGAACTGTAAGCGGTGTAACAATGGGACGTGGGGGCCCAGAGATGATTTCTTCGTCAAGGGGAAGTACTGTGCTGAGTGTCGACCCGGCTGGTCAGGCGGTGACTGCTTGAAGTGTGGAGGAGTGATCCGTAAACGTCAGGGCCACATAGTCCTGGAGAGTTACCCCACCAACGCTCGTTGTGAGTGGACTGTTCAGGTGGACCGAGCATTCACCATCGATTTCAGGTTTATGATGCTGAGCCTGGAGTTTGACCATTCCTGTCGCTACGACTACATCGAGGTGCGTGATGGTGACAGTATCAACTCTCGTGTGATTGGTCGGTTCTGTGGGAACAACAGGGCTGCTCCAATCCAGAGCTCTGGCAACTCCCTACACGTCCTGTTTGTAGCCGATGGCTATAAGAACTTTGACGGCTTCTTCGCCACCTTCCAAGAAAGCTCAGCATGCagctcctccccctgtctccatgATGGAACCTGTATCCTGGACACGTCCCAGTCCTACCACTGTGGCTGTCTGGGTGGCTACACTGGACAGCGGTGTGAGAATGTTGTAGGGTGCAGGAGGCCCCCAGTACCTGTCCATGGCTCCACAGAGGGGATATTCCATCACTCAGGGGCGCGAGTCACATTCCGCTGTGACCCTGGGTTCGAGCTGAGGGGGATCCGCACCGCCATCTGCCTCCAGGATGGCACCTGGAGCACCTCTGCCCCCCAGTGTGTGCCTATGGTGAAATTATGTGCCATCCCAGCCAAGCCTGTGCATGGAGACCACTTCCTAGTGTACGGGCCCAATGATATCATCATAGCCCTGCAGTACCTGTGCTACCGGCCCTACAAGCTGAGCGGGACGCACCAGAGGACCTGTTTGCCCAACAACACCTGGAGCGGAACACCCCCCACATGTGGTAAAGTGAATAATACACTTGCTGAACCAGGCAAAGACAAAGGAAATGACAAAGCAAGAGATACAGAAAAGGACAAAGAAAAGCATGCAGAAAAAGAGAAAGACACTGACAAAGACATTGAAAAACccaaagacaaagagaaagactATAATACAGGTATCAAAGAGGACGTAGCTTATAAAGATCCAGACACAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTTAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAACAGATGGTAAAGACAAAAACATTGACATTACTCTGGTTAACATCCCAGGACGAAACGAGGATAAAACAAGTGACAAAGAAAAAGAAACTGGGCTAGATAAACCTTCTGGAGATACCAAGGATAAAGTGGACAGTAAAGAAACGGATGACATTGTAAacacagtggagggagagagagaaaatgacgTGGGGAAAACCATCTCAGACATAGATGGCAGTCCAGATACTGGGGGAGACACAGACGTGGTACGGGAGATAGGAAAGACAACAGAGATCCCTgagatagtggtggtggtggaagataaaggacaggaggaagagaagaagaaagaggatcCAGTAGATAAAAGCAGTGATCCAAACATAGTTGATCCTAATGACTTAAAACCTAGGGGAGACACATTTGCCATAGATTACACTGAGTTAAAACCTAGGGGAGACACATTTGCCATAGATTACACCGAGTTAAAACCAAGGGGAGACACATTTGCTGTAGAGTACACTGTTACGGATGTGTTTGGCACCAATGACATAGAGCAGGGTATGAATACAACAATGTCGAAAGACATTGTGAAGATTTTTATTCCAActagaaacaacaacacacagttcACCCCATATTCATCAGGAGGTCAGGAAACCGAGAGGCTGGTGGAAAAGCCACACAAAGATATAGGAGCAACTAAAGATATAGGCTCAACTAAAGATACAATGGCAAGTACAAGCAAACCTGAAGAGGAAAATACTGGAAAAGATTCTGACAAAAAAACTGATGATGAGTCTGATGATGAGAAGAGAGAAAACCAAAGCATCAGTGAGGAGAGCTGTCCCCCTCTCCCACAGCTCTACCATGGGTACCAGCAGGTAGTGCCAGGGCTGGTGCCAGAGACAGTGGATTTCTTTTGTAATCACTCCTACGCTCTGAGTGGTGACGCCAGACGCACCTGCCAGGCTGGCGGAACCTGGGGAGGCACTCAACCCCTTTGTGTGAGAGcCTGCAGAGAGTCCAAGGTCTCAGAGCTGGTCAGACAGAGAGTTCTGCCTCCACAAGCTCCATCCAGGAAGACCCCTGTGCATAAGCTCTACTCATCCTCTGGGTTTGTGAAGATGTTCCAGTCTGTCGGCCCCACCAAAGTTCCCCCAATGCTATCCCAGCTGCCCCAGGGGTTCCACCACCTCCACACTCACATAGCGTACGAGTGTGCCTCTCCCTTTTACCAGCACTCAGGCAGTGCACGCCGCACCTGCCTCAAGACTGGCAAGTGGAGCGGGCGTCATGTCTCCTGTTCACCAGTGTGTGGGAAGCACCCTACCTTTGACCCCCAGAGCCCGGCAGAGTCCCACTGGCCCTGGTTAGCCGCCATCTACCAACGCCCCACCAACGGAGCAGGGACCAAGCTGGGCAAGAAGGCCAGCCTTGCGGGGTCACTAAAGAAGGGGACTGGAGCTGAATTAGGTGCTGGGGTTGGATCCCAGGGGCAGGATGAGGCCTCAGGCTGGCAGCTGGTGTGTAGCGGGGCCCTGGTGAACCAGCGGAGTGTGGTGTTGGCAGCCCACTGTGTGACTGAGCTGGGGAAACTGTACCCTCTGGATGCAGCCACGGTCAAGGTGGTGATGGGAAAACATTACCGCAGTGACCTTCGGGAGACCAAGGGCCTGCAGCATCTCAGGGTGGCCTCCATCTCTATCCACCCCAACTACGACCCCCTGGTTCTTGACTCAGACCTGGCAGTGATCAAGCTCCTGGACAAGGCTCGTATCGGGGAGAAGGTCCTGCCCCTCTGCCTACCTGACATCCAGGGGGGAGAGGTGACCTCCAGAGAAGGGTTGGTGACGGGCTGGGCCCCCCTGCCAGATCCCCGGATCGGGGAAGAGGAGCAGGCCAGGGTGGGTGTGCAGCACCTGGCCGACGTGGTGCCCTGCGAGCAGCAGTATGCCCGTAAAGGGGTGCCCGTGAGCGTCACGGACAACATGCTCTGTGGCCGCCAGCGACTCGACTACAGCCCATCTAACATCTGTCCCGCAGACACAGGGGGTATCCTGATCCTTCCTGCCCAGACAGGCTCCCCCCAGGACCCCTCTCTTGCCTCTCCAGAGGGGCGGGACACATCCAAAGGGGAGTGGCGGCTGCTGGGGTTGGTAAGTTTCGGGTATGACCAGGGAGAGTGTGACCCAGACCTGTTTACAGTGTACACACATGTGGCCAACTTCAAAGACTGGATAGAGAGCCATATGAAGTGACATCACCAGGATGTGACTCGCCCTGTATctctttttcctccctctcttcaacCAACAACTCCCtcttttgcttcatcattattcCCCCTCTTACTTTTATTTGCTGACATCTTTCTCcattctccctccttcctcctcccatcTACCTGCTTCTTGTTGTACCCAAGCAGGGAGTGTGATCACAAAAGAGCAGAGCAACACTGGACTGTACAGTGCTCTGAGCTGACTTTAGGGGGCCCTAACACAAACGGATCATATAGAGCTGCCCTCCACTCAGCACAATACTTCAGTGTTCAGGTTTTACCTTAAATTTGGTCTTAGACTTGAAAACGAAAACCAGTTCCCTGGGAAAAGCTGGTTTTCATTGTATTCTTTGATATGTATATATAATgtaatgaattattattatggCTCTGCACGTGGTTCAAGGGATGTACATATTGTATAGAAGGACATAAATGTAATGTTGTTTTTAATTAAAGATATGTGGTTGTGTGTA
>XM_021573108.2
ggaagagacaaattcagagagtgagggaaggaaagagagagggagggagaaagagaaagcaacagagggagagagaaagagaaagagtgtgaTGTCAAACCAGCTGAGCTCAGAAAGTAAACAGAGCTCCAGACTGCAGCATGCTTTCTGCGGTACGGGGACTGCAGCTGGGGGAAAGCCACGGGGGGACCCCTACGCTCCCTCACACAGGCATCCACCACTCCCCCGGGACCCGTGGATCTTCCCTCTTCATcactctcttcatcctcatctcCCTGTACCAGGGGCTAGCATGGCCCTACGACTACAGGTACCTATATAACCAGTGTCCGGGCCCAGAGTGGAACGTCATGTGTCGGGGCTGCTGTGAGTACGACGTGATCCGCTGTAAGTGTCCCCTCCAAGGCACCCCCGTTGGCTACGCTGTGCCTTGCTGCCGCAACGCCCTCAACGAGTGTGACCCCTGCATCATCCACCCAGgTTGCAGCATATTTGAGAACTGTAAGCGGTGTAACAATGGGACGTGGGGGCCCAGAGATGATTTCTTCGTCAAGGGGAAGTACTGTGCTGAGTGTCGACCCGGCTGGTCAGGCGGTGACTGCTTGAAGTGTGGAGGAGTGATCCGTAAACGTCAGGGCCACATAGTCCTGGAGAGTTACCCCACCAACGCTCGTTGTGAGTGGACTGTTCAGGTGGACCGAGCATTCACCATCGATTTCAGGTTTATGATGCTGAGCCTGGAGTTTGACCATTCCTGTCGCTACGACTACATCGAGGTGCGTGATGGTGACAGTATCAACTCTCGTGTGATTGGTCGGTTCTGTGGGAACAACAGGGCTGCTCCAATCCAGAGCTCTGGCAACTCCCTACACGTCCTGTTTGTAGCCGATGGCTATAAGAACTTTGACGGCTTCTTCGCCACCTTCCAAGAAAGCTCAGCATGCagctcctccccctgtctccatgATGGAACCTGTATCCTGGACACGTCCCAGTCCTACCACTGTGGCTGTCTGGGTGGCTACACTGGACAGCGGTGTGAGAATGTTGTAGGGTGCAGGAGGCCCCCAGTACCTGTCCATGGCTCCACAGAGGGGATATTCCATCACTCAGGGGCGCGAGTCACATTCCGCTGTGACCCTGGGTTCGAGCTGAGGGGGATCCGCACCGCCATCTGCCTCCAGGATGGCACCTGGAGCACCTCTGCCCCCCAGTGTGTGCCTATGGTGAAATTATGTGCCATCCCAGCCAAGCCTGTGCATGGAGACCACTTCCTAGTGTACGGGCCCAATGATATCATCATAGCCCTGCAGTACCTGTGCTACCGGCCCTACAAGCTGAGCGGGACGCACCAGAGGACCTGTTTGCCCAACAACACCTGGAGCGGAACACCCCCCACATGTGTGAATAATACACTTGCTGAACCAGGCAAAGACAAAGGAAATGACAAAGCAAGAGATACAGAAAAGGACAAAGAAAAGCATGCAGAAAAAGAGAAAGACACTGACAAAGACATTGAAAAACccaaagacaaagagaaagactATAATACAGGTATCAAAGAGGACGTAGCTTATAAAGATCCAGACACAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTTAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAGATCCAGACGCAGGCCTGAGGAACACAACAGTGGATGGTAAAACAGATGGTAAAGACAAAAACATTGACATTACTCTGGTTAACATCCCAGGACGAAACGAGGATAAAACAAGTGACAAAGAAAAAGAAACTGGGCTAGATAAACCTTCTGGAGATACCAAGGATAAAGTGGACAGTAAAGAAACGGATGACATTGTAAacacagtggagggagagagagaaaatgacgTGGGGAAAACCATCTCAGACATAGATGGCAGTCCAGATACTGGGGGAGACACAGACGTGGTACGGGAGATAGGAAAGACAACAGAGATCCCTgagatagtggtggtggtggaagataaaggacaggaggaagagaagaagaaagaggatcCAGTAGATAAAAGCAGTGATCCAAACATAGTTGATCCTAATGACTTAAAACCTAGGGGAGACACATTTGCCATAGATTACACTGAGTTAAAACCTAGGGGAGACACATTTGCCATAGATTACACCGAGTTAAAACCAAGGGGAGACACATTTGCTGTAGAGTACACTGTTACGGATGTGTTTGGCACCAATGACATAGAGCAGGGTATGAATACAACAATGTCGAAAGACATTGTGAAGATTTTTATTCCAActagaaacaacaacacacagttcACCCCATATTCATCAGGAGGTCAGGAAACCGAGAGGCTGGTGGAAAAGCCACACAAAGATATAGGAGCAACTAAAGATATAGGCTCAACTAAAGATACAATGGCAAGTACAAGCAAACCTGAAGAGGAAAATACTGGAAAAGATTCTGACAAAAAAACTGATGATGAGTCTGATGATGAGAAGAGAGAAAACCAAAGCATCAGTGAGGAGAGCTGTCCCCCTCTCCCACAGCTCTACCATGGGTACCAGCAGGTAGTGCCAGGGCTGGTGCCAGAGACAGTGGATTTCTTTTGTAATCACTCCTACGCTCTGAGTGGTGACGCCAGACGCACCTGCCAGGCTGGCGGAACCTGGGGAGGCACTCAACCCCTTTGTGTGAGAGcCTGCAGAGAGTCCAAGGTCTCAGAGCTGGTCAGACAGAGAGTTCTGCCTCCACAAGCTCCATCCAGGAAGACCCCTGTGCATAAGCTCTACTCATCCTCTGGGTTTGTGAAGATGTTCCAGTCTGTCGGCCCCACCAAAGTTCCCCCAATGCTATCCCAGCTGCCCCAGGGGTTCCACCACCTCCACACTCACATAGCGTACGAGTGTGCCTCTCCCTTTTACCAGCACTCAGGCAGTGCACGCCGCACCTGCCTCAAGACTGGCAAGTGGAGCGGGCGTCATGTCTCCTGTTCACCAGTGTGTGGGAAGCACCCTACCTTTGACCCCCAGAGCCCGGCAGAGTCCCACTGGCCCTGGTTAGCCGCCATCTACCAACGCCCCACCAACGGAGCAGGGACCAAGCTGGGCAAGAAGGCCAGCCTTGCGGGGTCACTAAAGAAGGGGACTGGAGCTGAATTAGGTGCTGGGGTTGGATCCCAGGGGCAGGATGAGGCCTCAGGCTGGCAGCTGGTGTGTAGCGGGGCCCTGGTGAACCAGCGGAGTGTGGTGTTGGCAGCCCACTGTGTGACTGAGCTGGGGAAACTGTACCCTCTGGATGCAGCCACGGTCAAGGTGGTGATGGGAAAACATTACCGCAGTGACCTTCGGGAGACCAAGGGCCTGCAGCATCTCAGGGTGGCCTCCATCTCTATCCACCCCAACTACGACCCCCTGGTTCTTGACTCAGACCTGGCAGTGATCAAGCTCCTGGACAAGGCTCGTATCGGGGAGAAGGTCCTGCCCCTCTGCCTACCTGACATCCAGGGGGGAGAGGTGACCTCCAGAGAAGGGTTGGTGACGGGCTGGGCCCCCCTGCCAGATCCCCGGATCGGGGAAGAGGAGCAGGCCAGGGTGGGTGTGCAGCACCTGGCCGACGTGGTGCCCTGCGAGCAGCAGTATGCCCGTAAAGGGGTGCCCGTGAGCGTCACGGACAACATGCTCTGTGGCCGCCAGCGACTCGACTACAGCCCATCTAACATCTGTCCCGCAGACACAGGGGGTATCCTGATCCTTCCTGCCCAGACAGGCTCCCCCCAGGACCCCTCTCTTGCCTCTCCAGAGGGGCGGGACACATCCAAAGGGGAGTGGCGGCTGCTGGGGTTGGTAAGTTTCGGGTATGACCAGGGAGAGTGTGACCCAGACCTGTTTACAGTGTACACACATGTGGCCAACTTCAAAGACTGGATAGAGAGCCATATGAAGTGACATCACCAGGATGTGACTCGCCCTGTATctctttttcctccctctcttcaacCAACAACTCCCtcttttgcttcatcattattcCCCCTCTTACTTTTATTTGCTGACATCTTTCTCcattctccctccttcctcctcccatcTACCTGCTTCTTGTTGTACCCAAGCAGGGAGTGTGATCACAAAAGAGCAGAGCAACACTGGACTGTACAGTGCTCTGAGCTGACTTTAGGGGGCCCTAACACAAACGGATCATATAGAGCTGCCCTCCACTCAGCACAATACTTCAGTGTTCAGGTTTTACCTTAAATTTGGTCTTAGACTTGAAAACGAAAACCAGTTCCCTGGGAAAAGCTGGTTTTCATTGTATTCTTTGATATGTATATATAATgtaatgaattattattatggCTCTGCACGTGGTTCAAGGGATGTACATATTGTATAGAAGGACATAAATGTAATGTTGTTTTTAATTAAAGATATGTGGTTGTGTGTA

Function

symbol description
pamr1 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human PAMR1 (peptidase domain containing associated with muscle regeneration 1).

NR:

description
inactive serine protease PAMR1

GO: NA

KEGG:

id description
K24362 PAMR1; inactive serine protease PAMR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573107.2 False 4662 mRNA 0.52 14 79103574 79151359
XM_021573108.2 True 4656 mRNA 0.52 14 79103574 79151359

Neighbor

gene id symbol gene type direction distance location
LOC118944149 NA coding upstream 172098 78931423 ~ 78931476 (+)
LOC110497055 LOC106561315 coding upstream 523384 78578149 ~ 78580190 (+)
LOC110502110 LOC106561316 coding upstream 546306 78537027 ~ 78557268 (+)
LOC110496993 LOC106561317 coding upstream 584503 78467699 ~ 78519071 (+)
lrrc56 lrrc56 coding upstream 652011 78394108 ~ 78451563 (+)
LOC110497158 LOC106573351 coding downstream 25669 79177028 ~ 79235909 (+)
LOC110497165 lrrc4c coding downstream 765563 79916922 ~ 80048182 (+)
rag2 rag2 coding downstream 1573001 80724360 ~ 80727535 (+)
furinb LOC106561302 coding downstream 1628700 80780059 ~ 80977313 (+)
LOC110497237 rccd1 coding downstream 1839619 80988887 ~ 80994869 (+)
G188890 NA non-coding upstream 1851 79101400 ~ 79101723 (+)
G188888 NA non-coding upstream 5694 79097665 ~ 79097880 (+)
G188745 NA non-coding upstream 59191 79044154 ~ 79044383 (+)
G188721 NA non-coding upstream 97255 79001094 ~ 79006319 (+)
G188577 NA non-coding upstream 239599 78863738 ~ 78863975 (+)
G188945 NA non-coding downstream 23847 79175206 ~ 79175428 (+)
G188946 NA non-coding downstream 24146 79175505 ~ 79175821 (+)
G188965 NA non-coding downstream 45729 79197088 ~ 79197592 (+)
G188990 NA non-coding downstream 87290 79238649 ~ 79238895 (+)
G188991 NA non-coding downstream 88693 79240052 ~ 79240610 (+)
G187320 LOC106561323 other upstream 833529 78267289 ~ 78270045 (+)
G187260 NA other upstream 925991 78137513 ~ 78177583 (+)
LOC110502077 LOC106561326 other upstream 1054774 78047373 ~ 78066844 (+)
G191052 NA other downstream 1603782 80755141 ~ 80756647 (+)
G191057 accs other downstream 1613973 80765332 ~ 80766714 (+)
LOC110497314 cfap44 other downstream 1914195 81058184 ~ 81080502 (+)
LOC110497320 paf other downstream 1932469 81083756 ~ 81086188 (+)
LOC110497665 LOC106561427 other downstream 3214926 82366183 ~ 82393779 (+)

Expression


Co-expression Network