iftap (cssa10h11orf74)


Basic Information

Item Value
gene id iftap
gene name cssa10h11orf74
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80708099 ~ 80725419 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573178.2
GCTCTGTTGTCAACCTTTTACTCGTGTTTTAACTAACAATTTTTCCTAAACACGGGTGAGCTGTACCCAGGGGTTGCCAGTGTACCAGGCCGGCCTGTTTTGGGTGGCAGGATGCCTGGGGTGGAGAGTGGCTCAGGTGGTCTGGCTGATGACAAGGTGGTCCTGGAGACCCTGAAGTGTTTCTGCAGCTCATCAGAACAGACCTACGACCAGTTCCTGTCCTCCTTCACACACCTGACTCCAGGGAGTGCTGGGAGGGGACACACGACTCTGCCCTCTGGACCCAGTCATCTCtctagggagatggagagatcagGGGAGTTGAGGAGGAATGGAGAAGAGGATgcagcagaagagaggagaggacagcagagtgTCTGTGTCCTGCCTGCTGATcaggaggagGTGGAGCTAGGTGCTGGAGTGACTGTGGGCAGCTGTGGAAATGGAGACTGTCGTCCACCAGGCATAACTCTCAAGCTGGATAACTACCTGGATGTTGGGGACTTCAGTGAGGAGGAAGGAGATGTAACTGCTGACCCAGaTGGTGGGGTTCGGGTTCTaccaggggaggtggaggaggaactCCCTGCCTACCTGCCCTCTTTCTGTCATCTGACCCAGCTGGACCTGACCTCCACAGGCAGGACGACGGGGACACGGCCGGGGACACGAGGACAGCAGCAGGACACGCCACCACAGGGACAGAGTGACAGTGAAGAGGTTTTGCCTTTCAACCTGGATGAGAACTTTGACTACGACAATGTTGTGCTGTCTAGCAAACATCTCCTACCACAGTTCAACACTGGTGTATGACCTCTGTGCAGGGACCACTGTCTGGGAGAGCCTTGTGTCATACCACATCAAATTACCCAACTTACCATTTAACTGGACTAATAAACCACTCCTGAAAACAG
>XM_021573163.2
GAAAATACTGTCAGATACATTTCCTATTAGTGTGTAGTTTTTAATCGCTTTCTTTTCGTGCAATTAAATAGCCAAAAGACTCATTTCCCAACATTCATTGCTCTACGCAAATCCAAGCGAAGGTGAGCTGTACCCAGGGGTTGCCAGTGTACCAGGCCGGCCTGTTTTGGGTGGCAGGATGCCTGGGGTGGAGAGTGGCTCAGGTGGTCTGGCTGATGACAAGGTGGTCCTGGAGACCCTGAAGTGTTTCTGCAGCTCATCAGAACAGACCTACGACCAGTTCCTGTCCTCCTTCACACACCTGACTCCAGGGAGTGCTGGGAGGGGACACACGACTCTGCCCTCTGGACCCAGTCATCTCtctagggagatggagagatcagGGGAGTTGAGGAGGAATGGAGAAGAGGATgcagcagaagagaggagaggacagcagagtgTCTGTGTCCTGCCTGCTGATcaggaggagGTGGAGCTAGGTGCTGGAGTGACTGTGGGCAGCTGTGGAAATGGAGACTGTCGTCCACCAGGCATAACTCTCAAGCTGGATAACTACCTGGATGTTGGGGACTTCAGTGAGGAGGAAGGAGATGTAACTGCTGACCCAGaTGGTGGGGTTCGGGTTCTaccaggggaggtggaggaggaactCCCTGCCTACCTGCCCTCTTTCTGTCATCTGACCCAGCTGGACCTGACCTCCACAGGCAGGACGACGGGGACACGGCCGGGGACACGAGGACAGCAGCAGGACACGCCACCACAGGGACAGAGTGACAGTGAAGAGGTTTTGCCTTTCAACCTGGATGAGAACTTTGACTACGACAATGTTGTGCTGTCTAGCAAACATCTCCTACCACAGTTCAACACTGGTGTATGACCTCTGTGCAGGGACCACTGTCTGGGAGAGCCTTGTGTCATACCACATCAAATTACCCAACTTACCATTTAACTGGACTAATAAACCACTCCTGAAAACAG
>XM_021573173.2
agagaaagggaagagaatAGCACAGCTTTATTTCCTTTTAATTTCTAGTTCTACTCAAGCTTGAATTCCTTTTCTATTATGCCTAACCACTTATTGTGTAGTctactggaggagagagagaaacatacacacacacacacaaacacacagtgagctGGAAGCAGCTGTCTGACAACCATTAGCATaatgtttttgtgtttttggaGGGGCTGTGAGAAGGCTCAGGGAGCATACAAAACAAACGCTGCAACCACAATTGCCTGGAAGAACGTTAGAACTCAAAAACAAACAAGCAGCGGAGCACCTGTGTCTCTTTGAGTTGTTGCTTAGAGGGGGGTACCTCCAGCACCAGAAACAGGAACTAAAGCTCCATTCCTAACAGCTGAATAGGTGAGCTGTACCCAGGGGTTGCCAGTGTACCAGGCCGGCCTGTTTTGGGTGGCAGGATGCCTGGGGTGGAGAGTGGCTCAGGTGGTCTGGCTGATGACAAGGTGGTCCTGGAGACCCTGAAGTGTTTCTGCAGCTCATCAGAACAGACCTACGACCAGTTCCTGTCCTCCTTCACACACCTGACTCCAGGGAGTGCTGGGAGGGGACACACGACTCTGCCCTCTGGACCCAGTCATCTCtctagggagatggagagatcagGGGAGTTGAGGAGGAATGGAGAAGAGGATgcagcagaagagaggagaggacagcagagtgTCTGTGTCCTGCCTGCTGATcaggaggagGTGGAGCTAGGTGCTGGAGTGACTGTGGGCAGCTGTGGAAATGGAGACTGTCGTCCACCAGGCATAACTCTCAAGCTGGATAACTACCTGGATGTTGGGGACTTCAGTGAGGAGGAAGGAGATGTAACTGCTGACCCAGaTGGTGGGGTTCGGGTTCTaccaggggaggtggaggaggaactCCCTGCCTACCTGCCCTCTTTCTGTCATCTGACCCAGCTGGACCTGACCTCCACAGGCAGGACGACGGGGACACGGCCGGGGACACGAGGACAGCAGCAGGACACGCCACCACAGGGACAGAGTGACAGTGAAGAGGTTTTGCCTTTCAACCTGGATGAGAACTTTGACTACGACAATGTTGTGCTGTCTAGCAAACATCTCCTACCACAGTTCAACACTGGTGTATGACCTCTGTGCAGGGACCACTGTCTGGGAGAGCCTTGTGTCATACCACATCAAATTACCCAACTTACCATTTAACTGGACTAATAAACCACTCCTGAAAACA

Function

NR:

description
uncharacterized protein C11orf74 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573178.2 False 917 mRNA 0.54 7 80708099 80725282
XM_021573163.2 False 984 mRNA 0.53 7 80708099 80725419
XM_021573173.2 True 1251 mRNA 0.52 7 80708100 80723744

Neighbor

gene id symbol gene type direction distance location
ehf ehf coding downstream 1314110 79386283 ~ 79393989 (-)
LOC110502133 pdhx coding downstream 1358051 79304316 ~ 79350048 (-)
LOC110502122 LOC106561308 coding downstream 1431123 79243612 ~ 79276976 (-)
LOC110497116 fjx1 coding downstream 1658137 79047432 ~ 79049962 (-)
LOC110497088 trim44 coding downstream 1709837 78926451 ~ 78998262 (-)
rag1 rag1 coding upstream 2484 80727903 ~ 80734996 (-)
si:ch211-256a21.4 LOC106561345 coding upstream 29631 80755050 ~ 80765470 (-)
accs accs coding upstream 40536 80765955 ~ 80776358 (-)
LOC110497262 cib1 coding upstream 269603 80995022 ~ 80999005 (-)
LOC110497280 LOC106561298 coding upstream 283281 81008700 ~ 81010914 (-)
G191509 NA non-coding downstream 52089 80655809 ~ 80656010 (-)
G191497 NA non-coding downstream 65765 80642121 ~ 80642334 (-)
G191494 NA non-coding downstream 71423 80636401 ~ 80636676 (-)
G190964 NA non-coding downstream 81485 80626415 ~ 80626614 (-)
G190963 NA non-coding downstream 81983 80625899 ~ 80626116 (-)
G191582 NA non-coding upstream 79737 80805156 ~ 80825746 (-)
G191668 LOC106562530 non-coding upstream 189239 80914658 ~ 80919928 (-)
G191669 LOC100380853 non-coding upstream 190260 80915679 ~ 80921415 (-)
G191727 LOC106561285 non-coding upstream 324122 81049541 ~ 81052986 (-)
G191777 paf non-coding upstream 358142 81083561 ~ 81086179 (-)
G190857 NA other downstream 155615 80552127 ~ 80552484 (-)
G189806 NA other downstream 947472 79760039 ~ 79760627 (-)
G189256 NA other downstream 1341530 79365849 ~ 79366569 (-)
G189093 slc1a2 other downstream 1483101 79223230 ~ 79224998 (-)
G188257 NA other downstream 2090792 78616582 ~ 78617307 (-)
cart2 LOC105018397 other upstream 467109 81192528 ~ 81194099 (-)
G193745 NA other upstream 2176221 82901640 ~ 82912504 (-)
G193755 NA other upstream 2280411 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 2494603 83219964 ~ 83223972 (-)

Expression


Co-expression Network