rag1 (rag1)


Basic Information

Item Value
gene id rag1
gene name rag1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80727903 ~ 80734996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933301.1
aCTCAGCTGTTAGACTCTAATGAAAGTTCAGTctgagagatacaaagagagctGGGAGTAAAGCAGACTTCCAAACGTCCCAGGGAAAAATCACACtgggtacatacacacacagagatggagagaaggaaaaTGACACTATGGGCACGCCAATGATGAGACATGagccGTTGCTGACACTATGGAGGAGACATATGCCCCCCGGTGCTCCATGCCGGCCGAGCTCCATCATCCCTACTCCAAGTTCTCAGACTGGAAGTTCAAGCTGTTCCGGGTCAGGTCCATGGAGAGGGCCCCACTGCCCGGGGAGATGCAGCTAGAGAGAGGGGCCTTGTCTGGTGTTGTGGCCTCTGCACCCCTGGGGGAAACTGTGGGGGATGTGGTGGGTCTCCCAGGGAGTGTGATGAAGCTTTGCCTGGGGGGTAAGAGCAAGGAGAACGTAGAGGGCCCGGGAAAGAGAGTGGACCTGAAACTCCAGGAGATGGACACACACATGAACCACCTCAGgtgtctgTGCCGTCTCTGTGGCGGGGCCCTGAGGAAAGCCAAAGGTCCAGAGCATGAAGTCCAGGGGCTTCTGGACGAGGCTAGCATGAGTGCCCTGCGTAGGATGGGCTGCAAGGCCACCAGCTGGCCAGAGGTCATCCTCAAGGTCTTCAAAGTGGACGTGGCGGGGGACATGGAGGTCGTCCATCCACCATTCTTCTGCCAGCGCTGCTGGACATTGGCCATGCGAGGAGGGGGCTTCTGCAGCTTCTCCAGGACCCATGTCCCTGGGTGGAGACCCCACaccaccctctgcctcctctGCCACCCCAagaaaccctcactacagaggagagggaggaagaggaggaagcctACTCGTGGAGCCCAACACCTGGCCAAGAGGACCAAGTGGGACCTCCAGGATAATGCTGCTATTGTTGGTGAGAAGAGAGCCTGGAGAACAGTGATAGATCCTCCCCAGGGACCTGGACTTAGACCCTGGGTGAGATCCAGCGTCCAGAGAGCTCAGTGGGTGAAGAGCATCACCCTCTGCCAGAAAGAGCACCTTAGTGCCAGACTGCTGTCCGAGGACCTCCCTGTGGACTTCCTGAGCTCAGTCACCTGTCAGGTGTGTGACCACCTGTTGTCTGAGCCCGTCCAGTCCCCCTGCAGACACCTCTTCTGCCGCAGCTGCATCGCTAAATATATTTACTCTCTGGGCCCCCACTGCCCGGCTTGCACCCTGCCCTGCGGCCCTGCCGACCTTACTGCCCCAGCTAAGGGCTTCCTGGGGGTCCTGCACTCCCTGCCGCTGCTTTGCCCCAGAGAGAGCTGTGGGGAGCAGGTACGGCTGGACTCCTTCAGAGCCCACTGCTTGGGTCACCATCTGGAGGAAGTGGATGGGGACCACAAGTCAGCGGAAAATAGCCTGGACAACTTCCTGCCTGTCAACAAAGGGGGAAGGCCCCGACAGCATCTCTTGTCACTGACGAGGCGTGCCCAGAAGCACCGGCTGAGGGACCTGAAGACCCAGGTGAAGGTGTTTGCAGAGAAGGAAGAAGGTGGAGACACCAAGTCGGTGTGCCTGACCCTGTTCCTGCTAGCTTTGAGGGCTGGAAACGAACACCGGCAGGCAGACGAACTGGAGGCCATGATGCAAGGCAGGGGCTTTGGCCTGCATCCTGCTGTGTGTCTGGCCATCCGGGTCAACACATTCCTGAGCTGCAGCCAGTACCACAAGATGTACCGCACCGTCAAGGCCACCAGTGGGCGCCAGATCTTCCAGCCACTACACACCTTACGCGCTGCAGAGAAGGAGCTCCTCCCAGGCTACCACCCCTTTGAGTGGCAGCCGGCTCTCAAGAGTGTGTCCACATCCTGCCATGTGGGGATCATTGATGGGCTATCAGGGTGGATCGCTTCGGTAGACGACTCCCCAGCAGATACAGTCACGCGACGGTTTCGCTACGACGTGGCCCTGGTGTCAGCCCTGAAGGACCTGGAGGAGGACATCATGGAGGGGCTGAGAGAGCGAGGCCTGGAGGACAGTGCTTGCACCTCGGGCTTCAGCGTTATGATCAAGGAGTCCTGCGATGGTATGGGGGACGTCAGTGAGAAGCATGGCGGAGGGCCGGCCGTCCCGGAAAAGGCTGTGCGTTTCTCCTTCACCATCATGTCCGTCTCTATTCAAGCTGAGGGAGAAGATGAGGCGATCACCATTTTCCGGGAGCCCAAGCCCAACTCAGAGATGTCCTGCAAGCCGCTAAGCCTGATGTTTGTGGACGAGTCGGACCACGAGACTCTCACAGGCGTCCTGGGGCCTGTGGTGGCCGAAAGGAATGCTATGAAGCACAGCCGTCTCATCCTGTCTGTGGGCGGCCTTTCTCGCTCCTTCCGCTTCCACTTCCGGGGCACGGGCTATGATGAGAAGATGGTGCGAGAGATGGAGGGTTTGGAGGCCTCTGGCTCCACTTACATCTGCACGCTGTGTGACTCCACTCGGGCAGAGGCCTCCCAAAACATGACTCTCCACTCTGTCACCCGCAGCCATGACGAGAACCTGGAGCGCTACGAACTTTGGAGGACCAACCCTCATTCTGAGTCAGCTGAAGAGCTGCGAGACCGAGTCAAAGGCGTCTCTGCCAAGCCCTTCATGGAGACCCAGCCCACACTGGACGCCCTGCACTGTGATATCGGCAATGCCACTGAGTTCTACAAGATCTTCCAGGATGAGATAGGGGAGGTCTATCACAAGGCAAACCCCAGCCGGGAGCAGCGTCGGAGCTGGCGGGCCGCCCTGGACAAGCAGCTGAGGAAGAAGATGAAGCTGAAGCCTGTGATGAGGATGAATGGGAACTATGCACGGAAGCTGATGACCCGGGAGGCAGTGGAGGCAGTGTGTGAGCTGGTGTGCTCAGAGGAGCGTCAGGAAGCTCTGAGGGAGCTGATGGGGCTCTACATCCAGATGAAGCCTGTGTGGCGCTCCACCTGCCCGGCCAAGGAGTGCCCAGACGAGCTCTGCCGGTATAGCTTCAACTCCCAACGCTTTGCAGAGCTGCTCTCCACCGTCTTCAAGTACAGGTATGACGGAAAGATCACCAACTACCTGCACAAGACCTTGGCCCATGTGCCAGAGATTGTGGAGAGGGATGGCTCCATCGGGGCCTGGGCCAGCGAGGGGAATGAGTCTGGGAACAAGCTGTTCAGACGGTTCAGGAAGATGAATGCCCGCCAGTCCAAGACCTTTGAGCTGGAGGACGTGCTGAAGCACCACTGGCTCTACACATCCAAGTACCTGCAGAAGTTCATGGAAGCTCACAAGGACTCTGCCAAAGCTCTGCAGGCCACCATTGACACTGTGGGGAGTCAGGAGACACAGGAGGATGCTGACATGTCACTGGATGTCCcagacttttgaaaaaaataaataatttgacATTTCTTTGGAACTTTATGGATTACAGGAGGGATATGTTTTAGCAGGAGCATGTCTAATTCTAAtctgtctgtactgtactgttctgcaGGGGTGGTCTGGGACCAAAAATCAGTCCTGGCATTCCTAGCATGTTAGCCCAGTGTTTTCCTTGAGGCCCACACAGCAGCCCATTTTTTTCCTCTAGTCCCCCACACCAGCAAAACATTTTCCCTTGAGGCCCCaattattagccagataatgatAATTTTGTGCAAAAAAAACCAAAGTTAGACATGTCCACTAGGCTAAAAAATGGACCCGCTAGTATAGCATTTCCACGAAAAGCCAGATGACCAGTGCGCCCCTGCTGTTCTGTTTTAATCTTAATATTTACTCTACAATATGAACTATGTATTAGTAGTGATGTAAGAGGAAGATACTTTATTCTGTAAAAACATTATTATTAATTGTCATAATCCAAAAAAGGTGGCACTTTTTTATTTGATTCATTATTTACTCTAAGGacatttgaaaatattttttacCTTAAATTTAATTTCCATACATAATTCCCAAAtgttgttgcattttatattggTATTTTATATTAGTTCATAATAATTTGATAGTGTTTTATCTCTGGGTGCCTATGAAATGTGGGACAGTTTATTGTATTGCATGGGTTATGACACATCCATGAATTTATCCAGTGGGTTTATTTATGGGAACAAATGAAAGCACTGTAAGTCATGGAATGGAAATTGTGATAAAGGAGCTCACATTTATGATCAGTGTATTAGTTTATCTCCAGTCCTGGAGCAAAATGGAATCATATAGACTCAAATTGTCTTCGTTTCAGGGCTGCCATCTAAAAATATTGCTTTAGAGCTTCATATTTGGGTCCTGAAGTCCAAAATGGGGGCCTGGGTGACTTTGAAACCATCTTTATCTGTTTTAGCATTTGCACAGTGAAGGAGAAATAATACCATTCTACCTCTTTTCATAAAATAACATATAAACAGCCCTTTTTGTTGACCGCATGAAAATGCAGTAGGCTCCATTACTAGGCCTAACACCTCTAGGCTTGACAGAAGGATGTTTTTAGATGATCTTTATTGAATCCTCACACACCCTGGTTCTATGCTTCTTCTGGAGCGAGTAAACAGGGAAGCAAGTGAGCCTTGAGGGGAACTGAAATGATTTGATAGTTtatttgtttgattgattgatgttatTGTTTATCTCTGATGACACCATTTTGAGTTGTGACAGGCAATTTTTATATTTGACACATTAAGTGTTCTAGCTCTATTTTACTGTCATGACTTTAACCTGATGATGTACAGATTTTCATAATGTATAATATTTAGTTTAAACAACAGTCACATAATAACATCACGTTTTACATGACGGTATGTTAAATAATGtaatttccattattaaattgCGTTTGCTTCATGAAGGATGATGGATATGGTTTGTGTGAATCTCATATCAGCGGTGTATTCAATCTGTTGCTTTGTCATGTTTCAagtgtacatttaaactcaggaaAATAACAACTGTTGCCAAAAACACTCactcatttgttttatttgaatgAAAATAATGATACGTATACCTGTTGCACATTTGTTCACTGTTCACTTGTTTAATGTGTTTGTTCATTTGATTTGGTGGTTTTATTGGCCTTTATTGTTTCACGATTACTGAAGTATTTGTTCATACCTCTCTACAATACTGTTAATGTACTGAAAATGTAGCAAACAAT
>XM_036933300.1
acagaaagagatccTTCCCATGGAGTAACAATCCATAGTGGGAGACACACCAAGCCAAGAATCAGCCCAAGGCCCAGAGAtagacacaaacatacacacacactgtgcaggCTGTGACTCCAAGTCCCCCCTGTGCCCCCATGCGGAGAGGAGGCCCAAGGGAACTGACACCAGCTGAGACTGAAAAACAAGagccGTTGCTGACACTATGGAGGAGACATATGCCCCCCGGTGCTCCATGCCGGCCGAGCTCCATCATCCCTACTCCAAGTTCTCAGACTGGAAGTTCAAGCTGTTCCGGGTCAGGTCCATGGAGAGGGCCCCACTGCCCGGGGAGATGCAGCTAGAGAGAGGGGCCTTGTCTGGTGTTGTGGCCTCTGCACCCCTGGGGGAAACTGTGGGGGATGTGGTGGGTCTCCCAGGGAGTGTGATGAAGCTTTGCCTGGGGGGTAAGAGCAAGGAGAACGTAGAGGGCCCGGGAAAGAGAGTGGACCTGAAACTCCAGGAGATGGACACACACATGAACCACCTCAGgtgtctgTGCCGTCTCTGTGGCGGGGCCCTGAGGAAAGCCAAAGGTCCAGAGCATGAAGTCCAGGGGCTTCTGGACGAGGCTAGCATGAGTGCCCTGCGTAGGATGGGCTGCAAGGCCACCAGCTGGCCAGAGGTCATCCTCAAGGTCTTCAAAGTGGACGTGGCGGGGGACATGGAGGTCGTCCATCCACCATTCTTCTGCCAGCGCTGCTGGACATTGGCCATGCGAGGAGGGGGCTTCTGCAGCTTCTCCAGGACCCATGTCCCTGGGTGGAGACCCCACaccaccctctgcctcctctGCCACCCCAagaaaccctcactacagaggagagggaggaagaggaggaagcctACTCGTGGAGCCCAACACCTGGCCAAGAGGACCAAGTGGGACCTCCAGGATAATGCTGCTATTGTTGGTGAGAAGAGAGCCTGGAGAACAGTGATAGATCCTCCCCAGGGACCTGGACTTAGACCCTGGGTGAGATCCAGCGTCCAGAGAGCTCAGTGGGTGAAGAGCATCACCCTCTGCCAGAAAGAGCACCTTAGTGCCAGACTGCTGTCCGAGGACCTCCCTGTGGACTTCCTGAGCTCAGTCACCTGTCAGGTGTGTGACCACCTGTTGTCTGAGCCCGTCCAGTCCCCCTGCAGACACCTCTTCTGCCGCAGCTGCATCGCTAAATATATTTACTCTCTGGGCCCCCACTGCCCGGCTTGCACCCTGCCCTGCGGCCCTGCCGACCTTACTGCCCCAGCTAAGGGCTTCCTGGGGGTCCTGCACTCCCTGCCGCTGCTTTGCCCCAGAGAGAGCTGTGGGGAGCAGGTACGGCTGGACTCCTTCAGAGCCCACTGCTTGGGTCACCATCTGGAGGAAGTGGATGGGGACCACAAGTCAGCGGAAAATAGCCTGGACAACTTCCTGCCTGTCAACAAAGGGGGAAGGCCCCGACAGCATCTCTTGTCACTGACGAGGCGTGCCCAGAAGCACCGGCTGAGGGACCTGAAGACCCAGGTGAAGGTGTTTGCAGAGAAGGAAGAAGGTGGAGACACCAAGTCGGTGTGCCTGACCCTGTTCCTGCTAGCTTTGAGGGCTGGAAACGAACACCGGCAGGCAGACGAACTGGAGGCCATGATGCAAGGCAGGGGCTTTGGCCTGCATCCTGCTGTGTGTCTGGCCATCCGGGTCAACACATTCCTGAGCTGCAGCCAGTACCACAAGATGTACCGCACCGTCAAGGCCACCAGTGGGCGCCAGATCTTCCAGCCACTACACACCTTACGCGCTGCAGAGAAGGAGCTCCTCCCAGGCTACCACCCCTTTGAGTGGCAGCCGGCTCTCAAGAGTGTGTCCACATCCTGCCATGTGGGGATCATTGATGGGCTATCAGGGTGGATCGCTTCGGTAGACGACTCCCCAGCAGATACAGTCACGCGACGGTTTCGCTACGACGTGGCCCTGGTGTCAGCCCTGAAGGACCTGGAGGAGGACATCATGGAGGGGCTGAGAGAGCGAGGCCTGGAGGACAGTGCTTGCACCTCGGGCTTCAGCGTTATGATCAAGGAGTCCTGCGATGGTATGGGGGACGTCAGTGAGAAGCATGGCGGAGGGCCGGCCGTCCCGGAAAAGGCTGTGCGTTTCTCCTTCACCATCATGTCCGTCTCTATTCAAGCTGAGGGAGAAGATGAGGCGATCACCATTTTCCGGGAGCCCAAGCCCAACTCAGAGATGTCCTGCAAGCCGCTAAGCCTGATGTTTGTGGACGAGTCGGACCACGAGACTCTCACAGGCGTCCTGGGGCCTGTGGTGGCCGAAAGGAATGCTATGAAGCACAGCCGTCTCATCCTGTCTGTGGGCGGCCTTTCTCGCTCCTTCCGCTTCCACTTCCGGGGCACGGGCTATGATGAGAAGATGGTGCGAGAGATGGAGGGTTTGGAGGCCTCTGGCTCCACTTACATCTGCACGCTGTGTGACTCCACTCGGGCAGAGGCCTCCCAAAACATGACTCTCCACTCTGTCACCCGCAGCCATGACGAGAACCTGGAGCGCTACGAACTTTGGAGGACCAACCCTCATTCTGAGTCAGCTGAAGAGCTGCGAGACCGAGTCAAAGGCGTCTCTGCCAAGCCCTTCATGGAGACCCAGCCCACACTGGACGCCCTGCACTGTGATATCGGCAATGCCACTGAGTTCTACAAGATCTTCCAGGATGAGATAGGGGAGGTCTATCACAAGGCAAACCCCAGCCGGGAGCAGCGTCGGAGCTGGCGGGCCGCCCTGGACAAGCAGCTGAGGAAGAAGATGAAGCTGAAGCCTGTGATGAGGATGAATGGGAACTATGCACGGAAGCTGATGACCCGGGAGGCAGTGGAGGCAGTGTGTGAGCTGGTGTGCTCAGAGGAGCGTCAGGAAGCTCTGAGGGAGCTGATGGGGCTCTACATCCAGATGAAGCCTGTGTGGCGCTCCACCTGCCCGGCCAAGGAGTGCCCAGACGAGCTCTGCCGGTATAGCTTCAACTCCCAACGCTTTGCAGAGCTGCTCTCCACCGTCTTCAAGTACAGGTATGACGGAAAGATCACCAACTACCTGCACAAGACCTTGGCCCATGTGCCAGAGATTGTGGAGAGGGATGGCTCCATCGGGGCCTGGGCCAGCGAGGGGAATGAGTCTGGGAACAAGCTGTTCAGACGGTTCAGGAAGATGAATGCCCGCCAGTCCAAGACCTTTGAGCTGGAGGACGTGCTGAAGCACCACTGGCTCTACACATCCAAGTACCTGCAGAAGTTCATGGAAGCTCACAAGGACTCTGCCAAAGCTCTGCAGGCCACCATTGACACTGTGGGGAGTCAGGAGACACAGGAGGATGCTGACATGTCACTGGATGTCCcagacttttgaaaaaaataaataatttgacATTTCTTTGGAACTTTATGGATTACAGGAGGGATATGTTTTAGCAGGAGCATGTCTAATTCTAAtctgtctgtactgtactgttctgcaGGGGTGGTCTGGGACCAAAAATCAGTCCTGGCATTCCTAGCATGTTAGCCCAGTGTTTTCCTTGAGGCCCACACAGCAGCCCATTTTTTTCCTCTAGTCCCCCACACCAGCAAAACATTTTCCCTTGAGGCCCCaattattagccagataatgatAATTTTGTGCAAAAAAAACCAAAGTTAGACATGTCCACTAGGCTAAAAAATGGACCCGCTAGTATAGCATTTCCACGAAAAGCCAGATGACCAGTGCGCCCCTGCTGTTCTGTTTTAATCTTAATATTTACTCTACAATATGAACTATGTATTAGTAGTGATGTAAGAGGAAGATACTTTATTCTGTAAAAACATTATTATTAATTGTCATAATCCAAAAAAGGTGGCACTTTTTTATTTGATTCATTATTTACTCTAAGGacatttgaaaatattttttacCTTAAATTTAATTTCCATACATAATTCCCAAAtgttgttgcattttatattggTATTTTATATTAGTTCATAATAATTTGATAGTGTTTTATCTCTGGGTGCCTATGAAATGTGGGACAGTTTATTGTATTGCATGGGTTATGACACATCCATGAATTTATCCAGTGGGTTTATTTATGGGAACAAATGAAAGCACTGTAAGTCATGGAATGGAAATTGTGATAAAGGAGCTCACATTTATGATCAGTGTATTAGTTTATCTCCAGTCCTGGAGCAAAATGGAATCATATAGACTCAAATTGTCTTCGTTTCAGGGCTGCCATCTAAAAATATTGCTTTAGAGCTTCATATTTGGGTCCTGAAGTCCAAAATGGGGGCCTGGGTGACTTTGAAACCATCTTTATCTGTTTTAGCATTTGCACAGTGAAGGAGAAATAATACCATTCTACCTCTTTTCATAAAATAACATATAAACAGCCCTTTTTGTTGACCGCATGAAAATGCAGTAGGCTCCATTACTAGGCCTAACACCTCTAGGCTTGACAGAAGGATGTTTTTAGATGATCTTTATTGAATCCTCACACACCCTGGTTCTATGCTTCTTCTGGAGCGAGTAAACAGGGAAGCAAGTGAGCCTTGAGGGGAACTGAAATGATTTGATAGTTtatttgtttgattgattgatgttatTGTTTATCTCTGATGACACCATTTTGAGTTGTGACAGGCAATTTTTATATTTGACACATTAAGTGTTCTAGCTCTATTTTACTGTCATGACTTTAACCTGATGATGTACAGATTTTCATAATGTATAATATTTAGTTTAAACAACAGTCACATAATAACATCACGTTTTACATGACGGTATGTTAAATAATGtaatttccattattaaattgCGTTTGCTTCATGAAGGATGATGGATATGGTTTGTGTGAATCTCATATCAGCGGTGTATTCAATCTGTTGCTTTGTCATGTTTCAagtgtacatttaaactcaggaaAATAACAACTGTTGCCAAAAACACTCactcatttgttttatttgaatgAAAATAATGATACGTATACCTGTTGCACATTTGTTCACTGTTCACTTGTTTAATGTGTTTGTTCATTTGATTTGGTGGTTTTATTGGCCTTTATTGTTTCACGATTACTGAAGTATTTGTTCATACCTCTCTACAATACTGTTAATGTACTGAAAATGTAGCAAACAAT
>NM_001124737.1
ATGGAGGAGACATATGCCCCCCGGTGCTCCATGCCGGCCGAGCTCCATCATCCCTACTCCAAGTTCTCAGACTGGAAGTTCAAGCTGTTCCGGGTCAGGTCCATGGAGAGGGCCCCACTGCCCGGGGAGATGCAGCTAGAGAGAGGGGCCTTGTCTGGTGTTGTGGCCTCTGCACCCCTGGGGGAAACTGTGGGGGATGTGGTGGGTCTCCCAGGGAGTGTGATGAAGCTTTGCCTGGGGGGTAAGAGCAAGGAGAACGTAGAGGGCCCGGGAAAGAGAGTGGACCTGAAACTCCAGGAGATGGACACACACATGAACCACCTCAGgtgtctgTGCCGTCTCTGTGGCGGGGCCCTGAGGAAAGCCAAAGGTCCAGAGCATGAAGTCCAGGGGCTTCTGGACGAGGCTAGCATGAGTGCCCTGCGTAGGATGGGCTGCAAGGCCACCAGCTGGCCAGAGGTCATCCTCAAGGTCTTCAAAGTGGACGTGGCGGGGGACATGGAGGTCGTCCATCCACCATTCTTCTGCCAGCGCTGCTGGACATTGGCCATGCGAGGAGGGGGCTTCTGCAGCTTCTCCAGGACCCATGTCCCTGGGTGGAGACCCCACaccaccctctgcctcctctGCACCCCAagaaaccctcactacagaggagagaggaagaggaggaagcctACTCGTGGAGCCCAACACCTGGCCAAGAGGACCAAGTGGGACCTCCAGGATAATGCTGCTATTGTTGGTGAGAAGAGAGCCTGGAGAACAGTGATAGATCCTCCCCAGGGACCTGGACTTAGACCCTGGGTGAGATCCAGCGTCCAGAGAGCTCAGTGGGTGAAGAGCATCACCCTCTGCCAGAAAGAGCACCTTAGTGCCAGACTGCTGTCCGAGGACCTCCCTGTGGACTTCCTGAGCTCAGTCACCTGTCAGGTGTGTGACCACCTGTTGTCTGAGCCCGTCCAGTCCCCCTGCAGACACCTCTTCTGCCGCAGCTGCATCGCTAAATATATTTACTCTCTGGGCCCCCACTGCCCGGCTTGCACCCTGCCCTGCGGCCCTGCCGACCTTACTGCCCCAGCTAAGGGCTTCCTGGGGGTCCTGCACTCCCTGCCGCTGCTTTGCCCCAGAGAGAGCTGTGGGGAGCAGGTACGGCTGGACTCCTTCAGAGCCCACTGCTTGGGTCACCATCTGGAGGAAGTGGATGGGGACCACAAGTCAGCGGAAAATAGCCTGGACAACTTCCTGCCTGTCAACAAAGGGGGAAGGCCCCGACAGCATCTCTTGTCACTGACGAGGCGTGCCCAGAAGCACCGGCTGAGGGACCTGAAGACCCAGGTGAAGGTGTTTGCAGAGAAGGAAGAAGGTGGAGACACCAAGTCGGTGTGCCTGACCCTGTTCCTGCTAGCTTTGAGGGCTGGAAACGAACACCGGCAGGCAGACGAACTGGAGGCCATGATGCAAGGCAGGGGCTTTGGCCTGCATCCTGCTGTGTGTCTGGCCATCCGGGTCAACACATTCCTGAGCTGCAGCCAGTACCACAAGATGTACCGCACCGTCAAGGCCACCAGTGGGCGCCAGATCTTCCAGCCACTACACACCTTACGCGCTGCAGAGAAGGAGCTCCTCCCAGGCTACCACCCCTTTGAGTGGCAGCCGGCTCTCAAGAGTGTGTCCACATCCTGCCATGTGGGGATCATTGATGGGCTATCAGGGTGGATCGCTTCGGTAGACGACTCCCCAGCAGATACAGTCACGCGACGGTTTCGCTACGACGTGGCCCTGGTGTCAGCCCTGAAGGACCTGGAGGAGGACATCATGGAGGGGCTGAGAGAGCGAGGCCTGGAGGACAGTGCTTGCACCTCGGGCTTCAGCGTTATGATCAAGGAGTCCTGCGATGGTATGGGGGACGTCAGTGAGAAGCATGGCGGAGGGCCGGCCGTCCCGGAAAAGGCTGTGCGTTTCTCCTTCACCATCATGTCCGTCTCTATTCAAGCTGAGGGAGAAGATGAGGCGATCACCATTTTCCGGGAGCCCAAGCCCAACTCAGAGATGTCCTGCAAGCCGCTAAGCCTGATGTTTGTGGACGAGTCGGACCACGAGACTCTCACAGGCGTCCTGGGGCCTGTGGTGGCCGAAAGGAATGCTATGAAGCACAGCCGTCTCATCCTGTCTGTGGGCGGCCTTTCTCGCTCCTTCCGCTTCCACTTCCGGGGCACGGGCTATGATGAGAAGATGGTGCGAGAGATGGAGGGTTTGGAGGCCTCTGGCTCCACTTACATCTGCACGCTGTGTGACTCCACTCGGGCAGAGGCCTCCCAAAACATGACTCTCCACTCTGTCACCCGCAGCCATGACGAGAACCTGGAGCGCTACGAACTTTGGAGGACCAACCCTCATTCTGAGTCAGCTGAAGAGCTGCGAGACCGAGTCAAAGGCGTCTCTGCCAAGCCCTTCATGGAGACCCAGCCCACACTGGACGCCCTGCACTGTGATATCGGCAATGCCACTGAGTTCTACAAGATCTTCCAGGATGAGATAGGGGAGGTCTATCACAAGGCAAACCCCAGCCGGGAGCAGCGTCGGAGCTGGCGGGCCGCCCTGGACAAGCAGCTGAGGAAGAAGATGAAGCTGAAGCCTGTGATGAGGATGAATGGGAACTATGCACGGAAGCTGATGACCCGGGAGGCAGTGGAGGCAGTGTGTGAGCTGGTGTGCTCAGAGGAGCGTCAGGAAGCTCTGAGGGAGCTGATGGGGCTCTACATCCAGATGAAGCCTGTGTGGCGCTCCACCTGCCCGGCCAAGGAGTGCCCAGACGAGCTCTGCCGGTATAGCTTCAACTCCCAACGCTTTGCAGAGCTGCTCTCCACCGTCTTCAAGTACAGGTATGACGGAAAGATCACCAACTACCTGCACAAGACCTTGGCCCATGTGCCAGAGATTGTGGAGAGGGATGGCTCCATCGGGGCCTGGGCCAGCGAGGGGAATGAGTCTGGGAACAAGCTGTTCAGACGGTTCAGGAAGATGAATGCCCGCCAGTCCAAGACCTTTGAGCTGGAGGACGTGCTGAAGCACCACTGGCTCTACACATCCAAGTACCTGCAGAAGTTCATGGAAGCTCACAAGGACTCTGCCAAAGCTCTGCAGGCCACCATTGACACTGTGGGGAGTCAGGAGACACAGGAGGATGCTGACATGTCACTGGATGTCCcagacttttga

Function

symbol description
rag1 Enables magnesium ion binding activity and sequence-specific DNA binding activity. Contributes to double-stranded DNA endodeoxyribonuclease activity. Acts upstream of or within V(D)J recombination and protein-DNA complex assembly. Part of DNA recombinase complex and endodeoxyribonuclease complex. Is expressed in gonad; hematopoietic cell; hypophysis; immune system; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in Omenn syndrome; combined cellular and humoral immune defects with granulomas; severe combined immunodeficiency; and severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, Nk cell-positive. Orthologous to human RAG1 (recombination activating 1).

NR:

description
V(D)J recombination-activating protein 1

GO:

id name namespace
GO:0033151 V(D)J recombination biological_process
GO:0010390 histone monoubiquitination biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0030183 B cell differentiation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10628 RAG1; V(D)J recombination-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933301.1 False 5177 mRNA 0.50 4 80727903 80734683
XM_036933300.1 False 5204 mRNA 0.50 4 80727903 80734996
NM_001124737.1 True 3222 mRNA 0.59 5 80729674 80733724

Neighbor

gene id symbol gene type direction distance location
iftap cssa10h11orf74 coding downstream 2484 80708099 ~ 80725419 (-)
ehf ehf coding downstream 1333914 79386283 ~ 79393989 (-)
LOC110502133 pdhx coding downstream 1377855 79304316 ~ 79350048 (-)
LOC110502122 LOC106561308 coding downstream 1450927 79243612 ~ 79276976 (-)
LOC110497116 fjx1 coding downstream 1677941 79047432 ~ 79049962 (-)
si:ch211-256a21.4 LOC106561345 coding upstream 20054 80755050 ~ 80765470 (-)
accs accs coding upstream 30959 80765955 ~ 80776358 (-)
LOC110497262 cib1 coding upstream 260026 80995022 ~ 80999005 (-)
LOC110497280 LOC106561298 coding upstream 273704 81008700 ~ 81010914 (-)
LOC110497288 znf774 coding upstream 289627 81024623 ~ 81027430 (-)
G191509 NA non-coding downstream 71893 80655809 ~ 80656010 (-)
G191497 NA non-coding downstream 85569 80642121 ~ 80642334 (-)
G191494 NA non-coding downstream 91227 80636401 ~ 80636676 (-)
G190964 NA non-coding downstream 101289 80626415 ~ 80626614 (-)
G190963 NA non-coding downstream 101787 80625899 ~ 80626116 (-)
G191582 NA non-coding upstream 70160 80805156 ~ 80825746 (-)
G191668 LOC106562530 non-coding upstream 179662 80914658 ~ 80919928 (-)
G191669 LOC100380853 non-coding upstream 180683 80915679 ~ 80921415 (-)
G191727 LOC106561285 non-coding upstream 314545 81049541 ~ 81052986 (-)
G191777 paf non-coding upstream 348565 81083561 ~ 81086179 (-)
G190857 NA other downstream 175419 80552127 ~ 80552484 (-)
G189806 NA other downstream 967276 79760039 ~ 79760627 (-)
G189256 NA other downstream 1361334 79365849 ~ 79366569 (-)
G189093 slc1a2 other downstream 1502905 79223230 ~ 79224998 (-)
G188257 NA other downstream 2110596 78616582 ~ 78617307 (-)
cart2 LOC105018397 other upstream 457532 81192528 ~ 81194099 (-)
G193745 NA other upstream 2166644 82901640 ~ 82912504 (-)
G193755 NA other upstream 2270834 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 2485026 83219964 ~ 83223972 (-)

Expression


Co-expression Network