si:ch211-256a21.4 (LOC106561345)


Basic Information

Item Value
gene id si:ch211-256a21.4
gene name LOC106561345
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80755050 ~ 80765470 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573191.2
atatgTTTATGACGTGGTCATCTATAGTACCATTCATGAGCTTTTAAGACAGTTGTTGTTCATACTGTATACATATGTACAGTAAATGGTTCTGAATATTTCACCAAGTCTTAATGTTGATAAATTGGTCAACGTTCAATAAAAGCCTTATTTTTACCATTTGTGGAGAAGTACCGTATGTGGTTTTCCAAATCAATTCTAGTGAAAGCCTAAATACTGTAGACTACATTTTTTAGTTGGTAAATCAAGGAAGTGAAACTCACATTAAATAGTTTTGAAACTCAAATTATTGAAGTATAATGTTGCCTGTTTTTGTTACTGTAGATATTCCAAGGACACAACATAATCTGTTTTTGCCTGCCTTTTGATACATAGTAATTGACCAGTAAAAGTTGCATAGGCTGTTGTTGACAGTTTGGCTCTGGGCTGGTGGGGTTTTTCCAAGATGACCCTGCTCTGGCTGGGGGCTAGAAAAGGAAGCTGGATGTCTTAATTTGAGGTGTGAAACacgaagtgtttgtgtgtgttaatgtgtgtgtatgtgtggcggGGGTATTTCCCCCCCCATGATGATAACCTGTCCTTTGTACACACCTGCAGAGTGAGGGAACAGGGACCAAGCTTTAAAAGTGTCCTCACCCTTCAAAACAGATATaaatgcagtaaaaaaaaaataagttgTTCGACTATTGTCCTCTCACTACCACGGTGTatatggtagagggagagagagctgtttTCACTTTCCAAACGGCATGAGCCTTTGTGTCACAGCCAAGAGATGCCGAGGGAACTCAAACACTGAGTGGGGGGTTTCCACTGTAGTGGGAAGGCGGAGAGCAACACAGAGGAAAATATTTAGTGTCATATTCCACCACTATGTGTGTGTTCCTGACTGGTACACTGGTAGTGTGAGTCACTGTATCTGAGTGGTCGATGGCTGTGAACTCATTATACAGTAGTCCATCACGCATCTGACCTGCTCCTGCTCTCCTCATGCTGGGAAGATTTATACAAAGCTTCATCGCACACTCTAATCCAGCATTCAGGAGTCCACAGTTCAGACAGAGTTCAACATAACAAGATTGTCTGATCCTCTGTATCAACAAAACAAAACTAAAGCCCTCTCAGTCTGTCAGTATGAAGGTGTTAGAGGTGGGAGACTCAGTGAGTCAGTTCAGGTTGGCTGAGTCATGTGTGGGGCTGGCAGGGTGTCTGTGCGTGGCCTACTCTGTTTGGACCCCTCGCTGGCTCAATGACCAGGGACTGTGGTCTATAGGCAACAACAgcaccaacacagacagtgatGGTGACCAGACTGGGGACATCATCTTTAACGCCCTGGAGGCAGAGCAAGTGTTTGGGGTGCTGTCATTCCTCATGGCTGTGAATTCAGGGGCTCTGTGCCTCGTGTTCGCCCTCTGCTGGACATCCCAGACAGTGCGCTCTTACTCCAACACCCGCTCCCTCCTCATGGCAGGCCAGGCCCTCTACCCCACCGTCTTGCTGCTCCTCACTCTAGGACCCACAGgattcttcttcCTCCTCAGCTGGTCCCTCTTCACCTACCAGCACCGGGTGGAGATTAGTGATGACTTCACATGCCTGGGCTCCTCCTTTTGGCTGGGTACCCTGGGCTGGGCCCTGCTATTGGTTGCTCTGCCTGTGGTCTTCCTGGTGGAGCAGTGTGTGGTCCCGGACATCCTGCCAGATCTCATGAAGGCTGCTGATGGGTGGCGGGGCGCCTCCCAGGTACCGTACGCCCAGCACTCGTTCATCGTGAGTCACCAGCGTTGTCATGAAGACCAGAGTGATGAAGACATTGCGAGAGGCCTGAGGAGGTACATGTCTGTACCCtgagaggaggaatagagaggacaCAGGACAGTGATGGAGTATTAGTGTAACCTTCTTCAGGCTCAGAGACTGAGCTAACTGCAGAATGGGACTGGACTGGGCACACAGCTGATAGGGGTCCATGTTCACACTAGCAGTTCACCAGGGAGAGGAGCTTCTAGTCTGTGTCTGTATCAGAGATTTCTCCACTGTAGGATAATGTTTACAGACGCACTCTGAGAATATGTAATATTagactaatcaaatcaaatttcattggTTGTgcacacatattttgcagatgttatcgcagatgcagcgaaatgcttatgtttctagctcaaacagtgcagtaatacctaacaaaacAAATGACCAATTAGCCCttttaaattataaacttggattagctaacacaacgtgccattagaacacaggagtgatggttgctgataatgggcctctgtacgcctatgtagatattccataaaaaatcagccgtttccagctaaaatggccatttacaacattaacaatatctacactgtatttctgatcaattttatgttattttaatggacttgAGAATgagaaaaatgtgcttttctttcaaaaacaaggacatttctatgcccaaacttttgaacggtagtgtatatatacacaaatataatggtgtgtgtatagacagtatatgaatagaaaagttGTGTACAGGAGTAGATATATAGGATAAGCattgaatagaatacagtatatacatataaagtgggtaaaacagtatgtaaacattattaaagtgaccaaaaGTGTCAATGCTGAGATAAAGGGTTCTTGTCAAGCAAGGAACAATTTATTATTTGTAGTTGTTTGTTGCCAAGCACACTTTCAGTAAGATTTTCTGTGTAGTAAAGGAAACATTTATGTTACAATAGCAGCCTCATGTGGTGAGTATGACCAAGGTTTGATGTTGAAAAAGCTATTTTTGATACAGCTTGGCAGCAGTGTTCTGTTCGCAAGTATTCAACATTAATTAGTGGAAAGTCACACATTTTGGTTGTTTGTGTACAAAGTGGGATCACTACTTGTTGAATTTAGATGAAAGTGATACATACATTTAGAGTTTAACTAATACTTCTAAGACAGTCCTATGTGAATGTGCATTTTCTCAGTGAGCTTGATACTCATCACCACTATAAAGTGACTGATATCACAACGTTTTTGCAATGGGACTGTGATATTATTGATATTGTACCTTTAAAAAACAGATGAATAAACTGCTGCTTTTATTTACTCA

Function

NR:

description
uncharacterized protein LOC110497196

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573191.2 True 3133 mRNA 0.43 4 80755050 80765470

Neighbor

gene id symbol gene type direction distance location
rag1 rag1 coding downstream 20054 80727903 ~ 80734996 (-)
iftap cssa10h11orf74 coding downstream 29631 80708099 ~ 80725419 (-)
ehf ehf coding downstream 1361061 79386283 ~ 79393989 (-)
LOC110502133 pdhx coding downstream 1405002 79304316 ~ 79350048 (-)
LOC110502122 LOC106561308 coding downstream 1478074 79243612 ~ 79276976 (-)
accs accs coding upstream 485 80765955 ~ 80776358 (-)
LOC110497262 cib1 coding upstream 229552 80995022 ~ 80999005 (-)
LOC110497280 LOC106561298 coding upstream 243230 81008700 ~ 81010914 (-)
LOC110497288 znf774 coding upstream 259153 81024623 ~ 81027430 (-)
tmem17 znf774 coding upstream 268534 81034004 ~ 81037186 (-)
G191509 NA non-coding downstream 99040 80655809 ~ 80656010 (-)
G191497 NA non-coding downstream 112716 80642121 ~ 80642334 (-)
G191494 NA non-coding downstream 118374 80636401 ~ 80636676 (-)
G190964 NA non-coding downstream 128436 80626415 ~ 80626614 (-)
G190963 NA non-coding downstream 128934 80625899 ~ 80626116 (-)
G191582 NA non-coding upstream 39686 80805156 ~ 80825746 (-)
G191668 LOC106562530 non-coding upstream 149188 80914658 ~ 80919928 (-)
G191669 LOC100380853 non-coding upstream 150209 80915679 ~ 80921415 (-)
G191727 LOC106561285 non-coding upstream 284071 81049541 ~ 81052986 (-)
G191777 paf non-coding upstream 318091 81083561 ~ 81086179 (-)
G190857 NA other downstream 202566 80552127 ~ 80552484 (-)
G189806 NA other downstream 994423 79760039 ~ 79760627 (-)
G189256 NA other downstream 1388481 79365849 ~ 79366569 (-)
G189093 slc1a2 other downstream 1530052 79223230 ~ 79224998 (-)
G188257 NA other downstream 2137743 78616582 ~ 78617307 (-)
cart2 LOC105018397 other upstream 427058 81192528 ~ 81194099 (-)
G193745 NA other upstream 2136170 82901640 ~ 82912504 (-)
G193755 NA other upstream 2240360 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 2454552 83219964 ~ 83223972 (-)

Expression


Co-expression Network