LOC110497237 (rccd1)


Basic Information

Item Value
gene id LOC110497237
gene name rccd1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80988887 ~ 80994869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573270.2
ATCGAACGGATCAAATTCTCTCACACCCATCTCCAACATCGTATGGAGCTGGAGGCAAGAGAGGAAAATGACCAGGAAGATGCTCTACAAATGTCGGCGCGTTTCCGAGGTGAGCAGGACGACTATGGGGTTACGTCCGGATGCCACCAGGCTGCAAGCAAAGTCGTGAGAATAGGAATATTGGGCCAGGGACACAAACATGTGGATTTCTGAGGAATGGAGGGAACAAATAGAAAGAAGAGGTCGAAGAGAATGAGGAAAACAGAGGTTTGGATTTGAATTTGAGGAAGATGGGGTGTTGAATAAGACTGGTGTCAAGTGCAAACAGAGTGGGCTGTGCGCCAGCCCAAATTCTGGAGgtgaaatggaagtgaatgagggcgAGTTAAGTGAGGTGGAAATTGTCTTGAAGAACTCGAAACATGAGCCTGGCATCAATGGACATGATAAAGAAGAATCTGGTCCAGTAGGAGTGACATTTTTGTAGAAAGGGGATCCTTACTTTTTAGCGGATCCATTATTGGTTTCTGGGTGGATGAGAAAGGAGGTGATGGAAGGCTGTGTTTGGCAGGTTTTGGAGTAGGGACCCCCAGTCAGAAAGGATGTGGCGGCTGTGTAGAGGAAAGCCGAGGGTGCCAGGATGCACATATCAGCGAGGGATATCTGGCCCTGTCTTTCACAGACAGAGTAGAGTGCTGGAACTCTGAGCGAAATGAGAAGAAACCAGGGTGGAGTATGGTGATTCCAGATAATACTGGGCCCTCACTAGCATTCCCATTAGTTCCAGGAGGGTACATAGCTTCCAATCCTCCCTTTTACCGCCCACTTTCCCCACAACTACTGGCTGTTAGCCTGGCACTAGGCACAGAGCACGCAGTCCTCCTCACTGCATCTGGAGACATCTACACCTGGGGCTCAGGCAGCCATGGGCAGCTGGGACATGGGGACCTGAGCCCGCAGGAGGAGCCCAGAGCAATGGAGGCACTAATGGGTATGTCCATGAGCACTGTGGCCGCCGGGGGttggcactctgtctgcaccagTGCTGGGGGAGACCTGTACGTGTGGGGCTGGAATGAGAGTGGCCAGGTGGGACTGCCATCACGAGCCCTAAGAGGAGAGCAGCAGAAGAGCCAGGACACAGGTGGTGCCAGCACATgtaaagatgaagaggagagcTACGACGACGTGTTCATATCAATACAGGCCTTCCCAGCCCTGGTGGATGTTACTCAGTCATGCGAGGTCAGCAAGATCAGCTGTGGGTCGCGTCACACTGCGGCAGTCACAAGTACAGGTGATCTCTACACTTGGGGCTGGGGTGAATACGGCCAGCTGGGACAGGGGACTGAGAACAGTTCAGACGAGCCAAGAAGGGTAGAGTTTTTCAAGGACCAGGGGCTGCGTGTGGTGGATGTAGTGTGTGGACCATGGAACACTTTTGTTTCTGCTATCAAAGAggacccctctctccatcctgacACAAATATCATTAATCCTCTAACCAAGAACGACATAGAATGGAAAAACTGCCTGTAGGAGTTGAGCACTAAGGACAGTGCACAGATTGATTGACTAGCTGCTTGTTTCAGACAAATAAAGTAAAGTCAGTGACTAA
>XM_021573248.2
tgcttcacatttatacatccggttgAAGTATCTGTCTCGTTGTTCTATCTGTAGCACTGATCGCAACGTTGTACGGATTGTTTTGTTTACGCTACCGCGAAACGCAGAGTTGCTGATGAATtggtttggatttggcttcaacGGCTTTGGGCAAATACGAACGAATGAAAAATTGACGGATGGGGAAAGTGCCGGAGATGCCAACGTGACATATCCAATCTCTATTGATATTGTTTGTCGGAATTTGGAAGAGGAGCCTGTCCAAATCTGTCAACATAATAGCAATGTTGATACGCAGATCAGGACAAGTTGGAGTCGAAGAGCAGCTCTGCATTCAAATAGTGATGGAAGGCTGTGTTTGGCAGGTTTTGGAGTAGGGACCCCCAGTCAGAAAGGATGTGGCGGCTGTGTAGAGGAAAGCCGAGGGTGCCAGGATGCACATATCAGCGAGGGATATCTGGCCCTGTCTTTCACAGACAGAGTAGAGTGCTGGAACTCTGAGCGAAATGAGAAGAAACCAGGGTGGAGTATGGTGATTCCAGATAATACTGGGCCCTCACTAGCATTCCCATTAGTTCCAGGAGGGTACATAGCTTCCAATCCTCCCTTTTACCGCCCACTTTCCCCACAACTACTGGCTGTTAGCCTGGCACTAGGCACAGAGCACGCAGTCCTCCTCACTGCATCTGGAGACATCTACACCTGGGGCTCAGGCAGCCATGGGCAGCTGGGACATGGGGACCTGAGCCCGCAGGAGGAGCCCAGAGCAATGGAGGCACTAATGGGTATGTCCATGAGCACTGTGGCCGCCGGGGGttggcactctgtctgcaccagTGCTGGGGGAGACCTGTACGTGTGGGGCTGGAATGAGAGTGGCCAGGTGGGACTGCCATCACGAGCCCTAAGAGGAGAGCAGCAGAAGAGCCAGGACACAGGTGGTGCCAGCACATgtaaagatgaagaggagagcTACGACGACGTGTTCATATCAATACAGGCCTTCCCAGCCCTGGTGGATGTTACTCAGTCATGCGAGGTCAGCAAGATCAGCTGTGGGTCGCGTCACACTGCGGCAGTCACAAGTACAGGTGATCTCTACACTTGGGGCTGGGGTGAATACGGCCAGCTGGGACAGGGGACTGAGAACAGTTCAGACGAGCCAAGAAGGGTAGAGTTTTTCAAGGACCAGGGGCTGCGTGTGGTGGATGTAGTGTGTGGACCATGGAACACTTTTGTTTCTGCTATCAAAGAggacccctctctccatcctgacACAAATATCATTAATCCTCTAACCAAGAACGACATAGAATGGAAAAACTGCCTGTAGGAGTTGAGCACTAAGGACAGTGCACAGATTGATTGACTAGCTGCTTGTTTCAGACAAATAAAGTAAAGTCAGTGACTAA
>XM_021573261.2
catttatacatccggttgAAGTATCTGTCTCGTTGTTCTATCTGTAGCACTGATCGCAACGTTGTACGGATTGTTTTGTTTACGCTACCGCGAAACGCAGAGTTGCTGATGAATtggtttggatttggcttcaacGGCTTTGGGCAAATACGAACGAATGAAAAATTGACGGATGGGGAAAGTGCCGGAGATGCCAACGTGACATATCCAATCTCTATTGATATTGTTTGTCGGAATTTGGAAGAGGAGCCTGTCCAAATCTGTCAACATAATAGCAATGTTGATACGCAGATCAGGACAAGTTGGAGTCGAAGAGCAGCTCTGCATTCAAATAGGCTGCCTTCTCGTGATAATAACTGGCAGACCGCTCAACCAGAGACCGCAGTGAAAGGTGATGGAAGGCTGTGTTTGGCAGGTTTTGGAGTAGGGACCCCCAGTCAGAAAGGATGTGGCGGCTGTGTAGAGGAAAGCCGAGGGTGCCAGGATGCACATATCAGCGAGGGATATCTGGCCCTGTCTTTCACAGACAGAGTAGAGTGCTGGAACTCTGAGCGAAATGAGAAGAAACCAGGGTGGAGTATGGTGATTCCAGATAATACTGGGCCCTCACTAGCATTCCCATTAGTTCCAGGAGGGTACATAGCTTCCAATCCTCCCTTTTACCGCCCACTTTCCCCACAACTACTGGCTGTTAGCCTGGCACTAGGCACAGAGCACGCAGTCCTCCTCACTGCATCTGGAGACATCTACACCTGGGGCTCAGGCAGCCATGGGCAGCTGGGACATGGGGACCTGAGCCCGCAGGAGGAGCCCAGAGCAATGGAGGCACTAATGGGTATGTCCATGAGCACTGTGGCCGCCGGGGGttggcactctgtctgcaccagTGCTGGGGGAGACCTGTACGTGTGGGGCTGGAATGAGAGTGGCCAGGTGGGACTGCCATCACGAGCCCTAAGAGGAGAGCAGCAGAAGAGCCAGGACACAGGTGGTGCCAGCACATgtaaagatgaagaggagagcTACGACGACGTGTTCATATCAATACAGGCCTTCCCAGCCCTGGTGGATGTTACTCAGTCATGCGAGGTCAGCAAGATCAGCTGTGGGTCGCGTCACACTGCGGCAGTCACAAGTACAGGTGATCTCTACACTTGGGGCTGGGGTGAATACGGCCAGCTGGGACAGGGGACTGAGAACAGTTCAGACGAGCCAAGAAGGGTAGAGTTTTTCAAGGACCAGGGGCTGCGTGTGGTGGATGTAGTGTGTGGACCATGGAACACTTTTGTTTCTGCTATCAAAGAggacccctctctccatcctgacACAAATATCATTAATCCTCTAACCAAGAACGACATAGAATGGAAAAACTGCCTGTAGGAGTTGAGCACTAAGGACAGTGCACAGATTGATTGACTAGCTGCTTGTTTCAGACAAATAAAGTAAAGTCAGTGACTAA
>XM_036956465.1
atttatacatccggttgAAGTATCTGTCTCGTTGTTCTATCTGTAGCACTGATCGCAACGTTGTACGGATTGTTTTGTTTACGCTACCGCGAAACGCAGAGTTGCTGATGAATtggtttggatttggcttcaacGGCTTTGGGCAAATACGAACGAATGAAAAATTGACGGATGGGGAAAGTGCCGGAGATGCCAACGTGACATATCCAATCTCTATTGATATTGTTTGTCGGAATTTGGAAGAGGAGCCTGTCCAAATCTGTCAACATAATAGCAATGTTGATACGCAGATCAGGACAAGTTGGAGTCGAAGAGCAGCTCTGCATTCAAATAGGCTGCCTTCTCGTGATAATAACTGGCAGACCGCTCAACCAGAGACCGCAGTGAAAGGTGATGGAAGGCTGTGTTTGGCAGGTTTTGGAGTAGGGACCCCCAGTCAGAAAGGATGTGGCGGCTGTGTAGAGGAAAGCCGAGGGTGCCAGGATGCACATATCAGCGAGGGATATCTGGCCCTGTCTTTCACAGACAGAGTAGAGTGCTGGAACTCTGAGCGAAATGAGAAGAAACCAGGGTGGAGTATGGTGATTCCAGATAATACTGGGCCCTCACTAGCATTCCCATTAGTTCCAGGAGGGTACATAGCTTCCAATCCTCCCTTTTACCGCCCACTTTCCCCACAACTACTGGCTGTTAGCCTGGCACTAGGCACAGAGCACGCAGTCCTCCTCACTGCATCTGGAGACATCTACACCTGGGGCTCAGGCAGCCATGGGCAGCTGGGACATGGGGACCTGAGCCCGCAGGAGGAGCCCAGAGCAATGGAGGCACTAATGGCTGGGGGAGACCTGTACGTGTGGGGCTGGAATGAGAGTGGCCAGGTGGGACTGCCATCACGAGCCCTAAGAGGAGAGCAGCAGAAGAGCCAGGACACAGGTGGTGCCAGCACATgtaaagatgaagaggagagcTACGACGACGTGTTCATATCAATACAGGCCTTCCCAGCCCTGGTGGATGTTACTCAGTCATGCGAGGTCAGCAAGATCAGCTGTGGGTCGCGTCACACTGCGGCAGTCACAAGTACAGGTGATCTCTACACTTGGGGCTGGGGTGAATACGGCCAGCTGGGACAGGGGACTGAGAACAGTTCAGACGAGCCAAGAAGGGTAGAGTTTTTCAAGGACCAGGGGCTGCGTGTGGTGGATGTAGTGTGTGGACCATGGAACACTTTTGTTTCTGCTATCAAAGAggacccctctctccatcctgacACAAATATCATTAATCCTCTAACCAAGAACGACATAGAATGGAAAAACTGCCTGTAGGAGTTGAGCACTAAGGACAGTGCACAGATTGATTGACTAGCTGCTTGTTTCAGACAAATAAAGTAAAGTCAGTGACTAA
>XM_036956466.1
atttatacatccggttgAAGTATCTGTCTCGTTGTTCTATCTGTAGCACTGATCGCAACGTTGTACGGATTGTTTTGTTTACGCTACCGCGAAACGCAGAGTTGCTGATGAATtggtttggatttggcttcaacGGCTTTGGGCAAATACGAACGAATGAAAAATTGACGGATGGGGAAAGTGCCGGAGATGCCAACGTGACATATCCAATCTCTATTGATATTGTTTGTCGGAATTTGGAAGAGGAGCCTGTCCAAATCTGTCAACATAATAGCAATGTTGATACGCAGATCAGGACAAGTTGGAGTCGAAGAGCAGCTCTGCATTCAAATAGGCTGCCTTCTCGTGATAATAACTGGCAGACCGCTCAACCAGAGACCGCAGTGAAAGGTGATGGAAGGCTGTGTTTGGCAGGTTTTGGAGTAGGGACCCCCAGTCAGAAAGGATGTGGCGGCTGTGTAGAGGAAAGCCGAGGGTGCCAGGATGCACATATCAGCGAGGGATATCTGGCCCTGTCTTTCACAGACAGAGTAGAGTGCTGGAACTCTGAGCGAAATGAGAAGAAACCAGGGTGGAGTATGGTGATTCCAGATAATACTGGGCCCTCACTAGCATTCCCATTAGTTCCAGGAGGGTACATAGCTTCCAATCCTCCCTTTTACCGCCCACTTTCCCCACAACTACTGGCTGTTAGCCTGGCACTAGGCACAGAGCACGCAGTCCTCCTCACTGCATCTGGAGACATCTACACCTGGGGCTCAGGCAGCCATGGGCAGCTGGGACATGGGGACCTGAGCCCGCAGGAGGAGCCCAGAGCAATGGAGGCACTAATGGGTGGTGCCAGCACATgtaaagatgaagaggagagcTACGACGACGTGTTCATATCAATACAGGCCTTCCCAGCCCTGGTGGATGTTACTCAGTCATGCGAGGTCAGCAAGATCAGCTGTGGGTCGCGTCACACTGCGGCAGTCACAAGTACAGGTGATCTCTACACTTGGGGCTGGGGTGAATACGGCCAGCTGGGACAGGGGACTGAGAACAGTTCAGACGAGCCAAGAAGGGTAGAGTTTTTCAAGGACCAGGGGCTGCGTGTGGTGGATGTAGTGTGTGGACCATGGAACACTTTTGTTTCTGCTATCAAAGAggacccctctctccatcctgacACAAATATCATTAATCCTCTAACCAAGAACGACATAGAATGGAAAAACTGCCTGTAGGAGTTGAGCACTAAGGACAGTGCACAGATTGATTGACTAGCTGCTTGTTTCAGACAAATAAAGTAAAGTCAGTGACTAA
>TU216603
CTGGTGCTGGACGCTGCGCAGGTTGAGCATGTAGAAGTCACAGGGCTCGCTGTTGCCATGGCAACTTTACCTCGAGCTCCACCTCTCAGGGCGAAGGAGACAAGAGAGTGAAACATGGAGAGTTTGGCAAAGAAGCCATCATGCTGAGTGCAATGGAGAAGGAGACCGAGAGAGATGACAAAAATAAATGGAGGGGAGTGACAAATAAAGAACGGAGACATGGGTTAAAGAGCGCAGCATGAGAGACCTacagtactcattcaagggtttttctttgttttttactgttttctacattgtagaataatagtgaagacatcaaaactatatttgagattcttcaaagtagccaccctttgccttgatgacagctttgcacacacttggcattctctcaaacagcttcacctggaatgcttttccaatagtcttgaaggagtcccacatatgctgagcacttgtgggctgcttttccttcactatgtggcccaattcatcccaaaccatctcaattgggttgaggttcggtgattgtggaggccaggtcatctgacgcagcactccatcttggtcaaatagcccttacacagcctggaggtgggttGGATCATTgtactactttgaagaatctaaaatctaaaataaatattgatttgtttaacacttttttggttactacatgatgtcatgtgtgttatttcagttttgatgtcttcactcttattatacaatgtagaaaatagtacaaataaagaaaaacccttgaatgagtatgtgtgtccaaacttttgactggtactgtatctatttttttatttgcatgtttagctcacatcatttaaaagtatgcattaaggtgtctttaATATAATAAATGTGTCAAAaacgaatgtagacattaatacatgcatttatatagcttccaaaattaatatatattttttttacaattgagGAGTACCAAGTTGGCGGTAGCTTCAATACCACGCAGTCATCAGTCAGTCATCCAATGTTTATACTTATTATTGGTTGACACATCTTGCTTTGAAATTAATTTCCATCactggaggttggtggcaccttatttGGGGAGGATGGGCCCGTAGTAATGGCAGGAACataataagtggaatggtatcaaagaggtttccatgtgtttgatgtaattCCATTCACTCAGTTCcctccccttagcagcctcctgtgatttcCATAATCCAGAAATTGCACATAAATATTTAAGGCTAGATGCAGTCTTTGGTGATGAAATTATTTAGATACAATGGATCAGCTTTTAATGAAATCACTCAGATGTATTAACATTGCAAGTTTTTCTGTCAGACAGCCTTCTAAACTCTTGGTGTTTTTGGTTTACAAACAATAACTGAGACATTGGAAATCTAGTGGAAATAGGAAAGGGAAGAAAAAATTATCCATATTATCAGAAGGTTCAAGTCAATCATTTCTGTTTCTCTGTGCATTATAGAACAACATAAATAATATGTTGGAAACATTAAACACTTGTAGAAATTGTCAGGGAATGCAAAGGAAATGCATGACGGGAAAAATGTCAGCAAGATAAAGgaatagcatcagcaatccagtgTTAATATATGTAATTAGTTTCAACTCGTCGGACAACTGCACAGCATGCATTCAATACGCTGATCTGACCTCCCACAATCGAACGGATCAAATTCTCTCACACCCATCTCCAACATCGTATGGAGCTGGAGGCAAGAGAGGAAAATGACCAGGAAGATGCTCTACAAATGTCGGCGCGTTTCCGAGGTGAGCAGGACGACTATGGGGTTACGTCCGGATGCCACCAGGCTGCAAGCAAAGTCGTGAGAATAGGAATATTGGGCCAGGGACACAAACATGTGGATTTCTGAGGAATGGAGGGAACAAATAGAAAGAAGAGGTCGAAGAGAATGAGGAAAACAGAGGTTTGGATTTGAATTTGAGGAAGATGGGGTGTTGAATAAGACTGGTGTCAAGTGCAAACAGAGTGGGCTGTGCGCCAGCCCAAATTCTGGAGgtgaaatggaagtgaatgagggcgAGTTAAGTGAGGTGGAAATTGTCTTGAAGAACTCGAAACATGAGCCTGGCATCAATGGACATGATAAAGAAGAATCTGGTCCAGTAGGAGTGACATTTTTGTAGAAAGGGGATCCTTACTTTTTAGCGGATCCATTATTGGTTTCTGGGTGGATGAGAAAGGAGGTGGGTGCATTTGaatcagtgaaggtaacctgtCGTGAACTTGTGATAtttgtttgtatttattatgacCAGAGGGAGTGGACGCTCTATGTCACACTACTTGGGTTAAGATCTGTACCATTGAAAGGAATAATTTAGAGTTAAGTGTGAAGTTAAAGATTCCTGGTGTTTGGTTTGTGATGCCTGCTGTTTGGTGCAACCCAGACCGGTGGGGAGCGCTGTGAAACAGTCACTGTAATCTAccctgccgcacgagcatgcttttgcggcacagtcgatagtgcgccggacctcgggctagaagtttgagggttcgagacctgctccctg

Function

symbol description
rccd1 Orthologous to human RCCD1 (RCC1 domain containing 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573270.2 False 1618 mRNA 0.51 8 80990978 80994869
XM_021573248.2 False 1412 mRNA 0.51 8 80992184 80994869
XM_021573261.2 False 1462 mRNA 0.51 9 80992191 80994869
XM_036956465.1 False 1407 mRNA 0.51 9 80992192 80994869
XM_036956466.1 False 1308 mRNA 0.50 8 80992192 80994869
TU216603 True 2559 lncRNA 0.41 2 80988887 80991854

Neighbor

gene id symbol gene type direction distance location
furinb LOC106561302 coding upstream 13665 80780059 ~ 80977313 (+)
rag2 rag2 coding upstream 263443 80724360 ~ 80727535 (+)
LOC110497165 lrrc4c coding upstream 942796 79916922 ~ 80048182 (+)
LOC110497158 LOC106573351 coding upstream 1755069 79177028 ~ 79235909 (+)
LOC110497132 pamr1 coding upstream 1839619 79103574 ~ 79151359 (+)
LOC110502143 LOC106573336 coding downstream 34472 81029341 ~ 81031876 (+)
LOC118942351 NA coding downstream 37130 81031999 ~ 81033476 (+)
LOC110497304 LOC106561285 coding downstream 54637 81049506 ~ 81055428 (+)
LOC110497314 cfap44 coding downstream 63315 81058184 ~ 81080502 (+)
LOC110497320 paf coding downstream 88887 81083756 ~ 81086188 (+)
G191167 NA non-coding upstream 66256 80914300 ~ 80924722 (+)
G191024 cssa10h11orf74 non-coding upstream 268398 80721510 ~ 80722580 (+)
G191025 cssa10h11orf74 non-coding upstream 282248 80708098 ~ 80708730 (+)
G191028 NA non-coding upstream 286651 80704097 ~ 80704327 (+)
G190986 NA non-coding upstream 341990 80648652 ~ 80648988 (+)
G191402 NA non-coding downstream 340209 81335078 ~ 81335608 (+)
G191405 NA non-coding downstream 347595 81342464 ~ 81342689 (+)
G191406 NA non-coding downstream 348759 81343628 ~ 81343850 (+)
G192071 NA non-coding downstream 542256 81537125 ~ 81537623 (+)
G191057 accs other upstream 224264 80765332 ~ 80766714 (+)
G191052 NA other upstream 234331 80755141 ~ 80756647 (+)
LOC110497055 LOC106561315 other upstream 2410916 78578149 ~ 78580190 (+)
LOC110496993 LOC106561317 other upstream 2484046 78467699 ~ 78519071 (+)
G187320 LOC106561323 other upstream 2720933 78267289 ~ 78270045 (+)
LOC110497665 LOC106561427 other downstream 1371416 82366183 ~ 82393779 (+)
G193170 bhlh3 other downstream 1406244 82401113 ~ 82403835 (+)
LOC110497686 NA other downstream 1423377 82417794 ~ 82426875 (+)

Expression


Co-expression Network