LOC110497262 (cib1)


Basic Information

Item Value
gene id LOC110497262
gene name cib1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 80995022 ~ 80999005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110497262
GCAACCCCATGCtactctgtatttttccatcacgagaaaggcccatggccctgtaactgttaacaatgtttcaagtcagctatgttgcataacacatacatacatccacacaagccaacagcagataatattaaatCATATATATGGTAATGGATATAATGTAAAACAGGATCCAACATTACATAAATAATCatgtcaataaacgttgggtagttagttaatatactgcctggcaagtttgatgtattagtagccaactaacgttaggtaacTAGCTAACATATGGTATATATTGCTGTAATGCTATGCAGTTTGTAAGGATAGCGTAGCAAACAAATTGTCAGTCAACGTAATTTATTTGAAAAGGCATTACTTTATTACACTTTTCAAAAtgttcttaacatttgtcataattagttaaagcaattcATTTGTATCTACTCTCGCCTgacttcggctgcatattttctgccattttcttcaaatctgaaaagttATGAAGCCACACCCATTTCCTGAAGAATGgcattagcttgggtgcttgactgcgattgtaaggtcagaacgctcaaatcaaccATACtcctagcaagaggttgcatagcaacatcATCAACTTCCAGTAGACAGATGAAGAGCTAGTaagctcaactgaaaggatactgtaatgacctgactagatcataaaggaacaattgtccagacagaggtttgagtttacgaattgacggtttattaaaccaactttacacaggctactgtttggccgtagcccacgccaaataaatgaaagataacCCACAAGCCAATCatgaccttctcttgtgaagagagagaaaaaaggctaaacctggtcttaacttccaatgctccatccccctgcccaacccccctccacgccactccgccaaccgCCAGGATGAccggcatcagaacattccaggcattcctgtgattggcagatagcaggttgattggcatgtcccgcgaacactgggtactggtaagtacaacacaaccacctactagcctaacacataacacacagctgtctgtgcgggtcgctacagATACCATTCGTTTACATTATACTAAAAttaactaatagtatatagtatgctcattaagtatgtagtatacagtatgttagtatgggtattcgaacacaacTTTCGTATTTTGGCGAATTTCGTACgtcatccgggaacttttggcatactaactatatccatactatgaccaataagcatactatatactcaattcacgTCACAAATAGTAAGGTTattatgagtattcgaacacaacTCAGGTCTGGGTTCCATTGACTCAGGCAGCCGCAGAATAGCAGGTGGCACTTCTACTTAATAATATTACGTAAATTCCGGAAAGGGAAGTGGCTCCTTTGGAAAGTTATCGAAGCAGAAAGTTCTCAGAAGTTATCTAGCTTAACAAACAGAAGAAGGGAAACATGGGGACAACAGCAAGTCAATTAGGGAAGGATCTGCTCTCAGAATATCAGGAGCTGACATTTCTTACAAAACAAGAAATTCTGTTGGCACACAAGCGATTCTGTGAACTCCTCTCCAAAGAGGACAGAAACCTCACCAGTGTGCCCATGGAGAAAGTCCTTTCACTGCCAGAACTCAAGTCCAACCCTTTCAGGAAAAGGATCTGTCTGCCATGTATTCTCAACATCTGATATGAAAGATGGAAGTCTCACCTTTGAGGACTTTCTTGATCTCTTGAGTGCCTTCAGCGATTCAGCTACACTGGAAATCAAGTCCCACTATGCATTCCGCATTTTTGACTTTGATGACGATGGCACTCTGGATGGTGGGGACCTGGAGAAGCTGGTGAACTGTTTGACTGGTGAGACTGAAGACACAAGGCTTACACCTGAAGAGATGAGGCAGCTCATCAGCAATATTCTTGAAGAGTCAGATATAGACAAAGATGGGACAGTAAATCTGTCAGAGTTCCAACATGTTATCTCCAGGTCACCAGATTTCGTCAGTTCTTTTGAGATTGTGCTGTGAAGTCTACGAATAACACACCAGGATATGGATGCTTTGGATTCTGTTCTATTCATACTAAGAGGACCTCTTCTATTTTTTTCATTGTAATACCAATAACTTTGAGATTTTGCCTTAAATTATACGGAGTGAGATTTTTTTGATTCTGAgaatcttcatcagctaacatCACTTTCTTGAATTTTGAAGAATTCAtataatcaacaacaaaaaaagcataGCACAAAGGcttaattcataaaggtcatgttaactgactggtATTATCCGATATAACAAAACATAAGATCTCCtcagcctgtgttaacctcagaccttattttctgcatttattccaaaaccctattctttccccattAATTTTTCACATAGGGATGGCTGAACAAACCAAAGGTAACTAATTCTGGGTTTTAGGACTACACGCTGGCGAGCTCTGATAATTCAAGTTTTTACCGGTTAAACATCCATGCAGCATCTGCATACCAACCATTTGATCTCATCAGCTTCATGGGATATGCATTTAGATCTTCGTGTTATTGTTGTTTTGAATTATGGGCTAGTGAGCAAATTTTAGAGCAGATGTTAAACTGTAGCATAGTTTAGGCTGTGTTTTTGCCAAGTGGCCACATGGATTATTTTGTTGTCTGACAGTAATGTCATACTATTATATTCGGTTCTGTTTTGTAGAATACCATCATTGTGATCTTGCAGACATTGAATCAGCTTTGATCAAACTTTATTAAACAAGCTCCATTAGCCAGAGTAGCCTGTTCTGAGTAGTACAGAGTGTGCGTAAAGTAGAGAA

Function

symbol description
cib1 Predicted to enable calcium ion binding activity. Is expressed in several structures, including Kupffer's vesicle; axis; pronephric duct; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in epidermodysplasia verruciformis. Orthologous to human CIB1 (calcium and integrin binding 1).

NR:

description
calcium and integrin-binding protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110497262 True 2841 mRNA 0.40 7 80995022 80999005

Neighbor

gene id symbol gene type direction distance location
accs accs coding downstream 218664 80765955 ~ 80776358 (-)
si:ch211-256a21.4 LOC106561345 coding downstream 229552 80755050 ~ 80765470 (-)
rag1 rag1 coding downstream 260026 80727903 ~ 80734996 (-)
iftap cssa10h11orf74 coding downstream 269603 80708099 ~ 80725419 (-)
ehf ehf coding downstream 1601033 79386283 ~ 79393989 (-)
LOC110497280 LOC106561298 coding upstream 9695 81008700 ~ 81010914 (-)
LOC110497288 znf774 coding upstream 25618 81024623 ~ 81027430 (-)
tmem17 znf774 coding upstream 34999 81034004 ~ 81037186 (-)
cart2 LOC105018397 coding upstream 193559 81192528 ~ 81194099 (-)
LOC118942622 NA coding upstream 240025 81232166 ~ 81240770 (-)
G191669 LOC100380853 non-coding downstream 74146 80915679 ~ 80921415 (-)
G191668 LOC106562530 non-coding downstream 75094 80914658 ~ 80919928 (-)
G191582 NA non-coding downstream 169276 80805156 ~ 80825746 (-)
G191509 NA non-coding downstream 339012 80655809 ~ 80656010 (-)
G191497 NA non-coding downstream 352688 80642121 ~ 80642334 (-)
G191727 LOC106561285 non-coding upstream 50536 81049541 ~ 81052986 (-)
G191777 paf non-coding upstream 84556 81083561 ~ 81086179 (-)
G191832 rps17 non-coding upstream 143419 81142424 ~ 81185888 (-)
G191890 NA non-coding upstream 233534 81232539 ~ 81297634 (-)
G190857 NA other downstream 442538 80552127 ~ 80552484 (-)
G189806 NA other downstream 1234395 79760039 ~ 79760627 (-)
G189256 NA other downstream 1628453 79365849 ~ 79366569 (-)
G189093 slc1a2 other downstream 1770024 79223230 ~ 79224998 (-)
G193745 NA other upstream 1902635 82901640 ~ 82912504 (-)
G193755 NA other upstream 2006825 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 2221017 83219964 ~ 83223972 (-)
G194491 NA other upstream 2616561 83615566 ~ 83616034 (-)

Expression


Co-expression Network