LOC110497280 (LOC106561298)


Basic Information

Item Value
gene id LOC110497280
gene name LOC106561298
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81008700 ~ 81010914 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573315.2
TGTTACCTCCTACCAGATGAGGTTGCCCGCGGAAACGGACAGAATCCAGGAACTAGCTACTTCGGAAGCTACTAAACGTAATCTAAAATGTCTAAAATACAGCTGTTAAGAGTGTTTCTCAATGAGCGATTAAGAACTGCTGCTGAGGAGATATTATGGGCAGTTGAAAAAACGATAGCAGAAGAAGTTTCCCGTTCAAATGAGGAAAATGACCGTCTCCAGAGGCAGCTTGAAATCGCTCTCATCAAGCTAAACAGAGCAGACATCCTCCAACAGTCAGTCTCGGAACAGGTTCCccctgagcagcagcagtgtgtgcAGGAGTGGAGCCCCAGTCTCGGACAAGAGGACCCAGAGCCTACACAGAtaaaggaggaacaggaggaactcaGGACCAGTCAATGGGAAGAACAGCTTCAAGAGCTGGAAGATGATACCAAAGACTCCATATTCACTAATGCCTTTATGGAACCTGACTGTGAAGACCCAACTCGGCACTCATATCTTTATCAAGCCCAGAATgagggaaaagaagagagagactcTCTACCCAGCACCTCAACTGCAAATATCAAAGCAGAAACTGGTGGAGAGGACTACAGATTATCAGAACCAACCAGTGATTCTCAGCCTAATTATGCAAGAAATCCATACTGTTCTGCAGCTCAGAGGGAAAACATTGATTGGATGGGAGTTGGAGGGCCTCCGTCAGGTTTTAAACCAGTCAAATCAAAGAAAAGATGGACAGGAAAAAGACAAAGTTCCCATATGAATATTAAGGGTAGAAAATCCACAGAGTCGTCCGATCTGAAATCACCCAGGCAAAGGGATAATGCTCCTTGCCGTTGTAAAGTGTGTGGAAAGTCTTTCCAGTACATGGGTTCGTTAATGAAACATGTGCAAACTCATACAAATGAGAAAGAACAtatttgtggtgtgtgtggaaAATGTTTTGAGTCCACAGAAAGTATGAAACATCACATCCAAACTCACATTGCAGATAGGATGTGTTGTCATGTTTGTAGTAAATGCTTCACTAGCAATAGGGATCTGATTGTGCACATGAGAACCCACACAGGGGATAAACCGTATCAATGTTCTGATTGTGGCAAAGAATTCAGCGTTCGCAATAGTCTGAAAAGGCACATGAAGATTCATGCAGGAGGTAAAGGATATAGCTGCAGTCATTGTGACAAGTGTTTCAGCACTAGCTTCCGTCTGACATTTCACATGATGAGGAGTCACAGGGGCGAAATCATACAGGTGTCATGTATGTAGAAAAACTGCTTTACCCAATAATGTGTAATCAGAAAAGTCACACTGGGGAAAATGTGTATGAGTGCAGTGATTGCAGTAAATATTTCAGTGACAGTGGCTGCTTGAATTTCTAAAAAGTCCACACAGACCGCTGTCATATACGTTGCTCACCTAGATCTGTATAGTCCTAATGCTGGAGTAACTCGCCATTGTGCGGCCTTTGAATGAGCCTGGCTTGCAAAAAGAGACAACCTGTGTGTTTTTGGAGTTCTATTATAGTGGGAGGAAAGGAAATTAGCTACTAATGGTAATACATCtaaaacataataaaagtacTATGATTTCAA

Function

NR:

description
zinc finger protein with KRAB and SCAN domains 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573315.2 True 1604 mRNA 0.43 2 81008700 81010914

Neighbor

gene id symbol gene type direction distance location
LOC110497262 cib1 coding downstream 9695 80995022 ~ 80999005 (-)
accs accs coding downstream 232342 80765955 ~ 80776358 (-)
si:ch211-256a21.4 LOC106561345 coding downstream 243230 80755050 ~ 80765470 (-)
rag1 rag1 coding downstream 273704 80727903 ~ 80734996 (-)
iftap cssa10h11orf74 coding downstream 283281 80708099 ~ 80725419 (-)
LOC110497288 znf774 coding upstream 13709 81024623 ~ 81027430 (-)
tmem17 znf774 coding upstream 23090 81034004 ~ 81037186 (-)
cart2 LOC105018397 coding upstream 181650 81192528 ~ 81194099 (-)
LOC118942622 NA coding upstream 228116 81232166 ~ 81240770 (-)
LOC110497492 mfs11 coding upstream 295167 81306081 ~ 81309081 (-)
G191669 LOC100380853 non-coding downstream 87824 80915679 ~ 80921415 (-)
G191668 LOC106562530 non-coding downstream 88772 80914658 ~ 80919928 (-)
G191582 NA non-coding downstream 182954 80805156 ~ 80825746 (-)
G191509 NA non-coding downstream 352690 80655809 ~ 80656010 (-)
G191497 NA non-coding downstream 366366 80642121 ~ 80642334 (-)
G191727 LOC106561285 non-coding upstream 38627 81049541 ~ 81052986 (-)
G191777 paf non-coding upstream 72647 81083561 ~ 81086179 (-)
G191832 rps17 non-coding upstream 131510 81142424 ~ 81185888 (-)
G191890 NA non-coding upstream 221625 81232539 ~ 81297634 (-)
G190857 NA other downstream 456216 80552127 ~ 80552484 (-)
G189806 NA other downstream 1248073 79760039 ~ 79760627 (-)
G189256 NA other downstream 1642131 79365849 ~ 79366569 (-)
G189093 slc1a2 other downstream 1783702 79223230 ~ 79224998 (-)
G193745 NA other upstream 1890726 82901640 ~ 82912504 (-)
G193755 NA other upstream 1994916 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 2209108 83219964 ~ 83223972 (-)
G194491 NA other upstream 2604652 83615566 ~ 83616034 (-)

Expression


Co-expression Network