tmem17 (znf774)


Basic Information

Item Value
gene id tmem17
gene name znf774
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81034004 ~ 81037186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573342.2
CTGCTGAATCAGTCATAATTTTGATATCAATGTATGACCACCGGTCATGAAGGAAAAGAAACGATGAAAGCAGGCACATTTGGGTCGCGAGATTTTGGGCAGAACGCGAGATTTTCTGTGACCAAGGGAACCGTGTTTTGTTGCTGGCAGGCATGACTTTCTAAACCGCTGTCTTGCTAGCACAGGAGCATCTTTGCAATTCGCATGGAGCTTCCAGAACCGATCAGAAGACGTTTAGGACACTTTTCCAGAACTGTGTTTGTTGATCAGAGTCGTACTCAACCATCTCCCGAAGATCATGTCACGTTTTTGGGGCACAacagtgaggttgtctCCAGCCTGCCTCTCCAGATGTCACTGTTCTTCAACATGTGTTTTTTCCCACTGTGGTGGATCAGCGAGGTGGTGATGCTGCACCTCAAGTATCCAGCCCTTCCTGACTACTATAAGTTCATCCTCATCACCATCCTCATCCTGATGACTCTTGTAGAGGCTATCAGACTCTACCTAGGCTATGCAGGAAATTTGCAAgagaagGTCCCTGAGCTGGCTGGTTTTTGGCTCCTGAGTCTCCTGCTGCAGTTTCCTTTGATTCTGTTTCAGCTCTTCAACCAAGCCATTCTGATCCAACCTCTGGAGAGAGGGGTTCACTTCATTCTGGCCCTGTTCATACTCACACAGgcCCTCTCTGGCTTTGTGGCTCTACGTGGGAtggtcagacacacagagagccacTTCCACCTCAGACAGTTTGATGGGGTTCAGGAGCTGAGGGCCTGACTGCTCTGCTGAGCTGACATGCAGAGACAGAGGTACTCGGGTGTAAATCTCCTATTGATTATGAGAAATTTGAGTTGCTTAAGTGTATCTCAAGTTAGAATTCAGCTTTGCGTTTTCAGTGGACCATGTTCAGACATTAACACAATGTGTTTTGTGCCTTGAATGATCATTTTTGGGGGTTGTTGTACAGATGTGAAGACAATAAAGGTTTGGGTTTTTAGACGTA

Function

symbol description
znf774 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

NR:

description
transmembrane protein 17

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0036038 MKS complex cellular_component
GO:0060170 ciliary membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19384 TMEM17; transmembrane protein 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573342.2 True 1006 mRNA 0.47 5 81034004 81037186

Neighbor

gene id symbol gene type direction distance location
LOC110497288 znf774 coding downstream 6574 81024623 ~ 81027430 (-)
LOC110497280 LOC106561298 coding downstream 23090 81008700 ~ 81010914 (-)
LOC110497262 cib1 coding downstream 34999 80995022 ~ 80999005 (-)
accs accs coding downstream 257646 80765955 ~ 80776358 (-)
si:ch211-256a21.4 LOC106561345 coding downstream 268534 80755050 ~ 80765470 (-)
cart2 LOC105018397 coding upstream 155378 81192528 ~ 81194099 (-)
LOC118942622 NA coding upstream 201844 81232166 ~ 81240770 (-)
LOC110497492 mfs11 coding upstream 268895 81306081 ~ 81309081 (-)
sycp3 scp3 coding upstream 276883 81314069 ~ 81323099 (-)
actr6 arp6 coding upstream 294812 81331998 ~ 81338259 (-)
G191669 LOC100380853 non-coding downstream 113128 80915679 ~ 80921415 (-)
G191668 LOC106562530 non-coding downstream 114076 80914658 ~ 80919928 (-)
G191582 NA non-coding downstream 208258 80805156 ~ 80825746 (-)
G191509 NA non-coding downstream 377994 80655809 ~ 80656010 (-)
G191497 NA non-coding downstream 391670 80642121 ~ 80642334 (-)
G191727 LOC106561285 non-coding upstream 12355 81049541 ~ 81052986 (-)
G191777 paf non-coding upstream 46375 81083561 ~ 81086179 (-)
G191832 rps17 non-coding upstream 105238 81142424 ~ 81185888 (-)
G191890 NA non-coding upstream 195353 81232539 ~ 81297634 (-)
G190857 NA other downstream 481520 80552127 ~ 80552484 (-)
G189806 NA other downstream 1273377 79760039 ~ 79760627 (-)
G189256 NA other downstream 1667435 79365849 ~ 79366569 (-)
G189093 slc1a2 other downstream 1809006 79223230 ~ 79224998 (-)
G193745 NA other upstream 1864454 82901640 ~ 82912504 (-)
G193755 NA other upstream 1968644 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 2182836 83219964 ~ 83223972 (-)
G194491 NA other upstream 2578380 83615566 ~ 83616034 (-)

Expression


Co-expression Network