cart2 (LOC105018397)


Basic Information

Item Value
gene id cart2
gene name LOC105018397
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81192528 ~ 81194099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573503.2
TATAACTAACTTTCTAGACCATCAGATTACGTTTTGTTAATTTTAATAAAAATTAgcaatcagatataataaaatattaaacTGCCCATGGCTGTACTCTGTGCACTAGCAAAGACCACAAGAGCAAAAATAATTCTGAAGGGCATTTGCTGAGACAGTTTGGACAGCGTAATGGGCTTCTTACGTAGGTTATTAATTCTCTTACGTATATAAGGAGATCAATGCTCAAGGCGGAGCAATTCAATATCAATAGGAATACAAACACTGAAGAGCAAACAAAAGGAGGCAAAACGGCAGGGATTGGTCAATTGAGTTGAAATAGGAAACAACTTCGCGCGCTCGTAAAGCACTTCTCCAGATCAGGACCATGGAGAGCTCTAAACTGTGGACGAGAGCGGTCGTTTGTACAGCGCTGCTGTCCATCCTATGTGGTGCTGAAACGAGCGACTCAGAAATGGAAGTGGATTTGGAAACGAGAAACATTCACGACTTCTATCCACAAAATCCGAATCTAACGAACGAAAAACGTCTTCTTGGAGCTCTACACGAAGTTCTAAAAAAACTGCAGACCAAAAGAATTAATCCATGGGAAAAGAAATTTGGACAAGTTCCCACTTGCGACGTGGGGGAGCATTGCGCAGTGAGGAAAGGTGCTCGAATCGGCAAAATGTGCGACTGTCCACGGGGAGCTTTCTGCAACTTCTTTCTGTTGAAGTGCTTGTGAATGGAGGTTTATTGGATTCAATCCCCTGTCATTGTGTTATTTAAAAGAAACATATGTCATTATTTTTATGAATATTTTTCAAATACAGGCGGACTATAATTGTCAATGTTATGGTGGGACCACCAATTAGATAATGGTACATCCTATCGTTTGCTGGAGTTAGATTAAACATTTGTGTCACCTAAGTGTTACTGAGCTCTCTATATTGTGCAATAAAGTGTGTCACAACTTATTTCGTAATCATTA
>TU217319
AATACAAACACTGAAGAGCAAACAAAAGGAGGCAAAACGGCAGGGATTGGTCAATTGAGTTGAAATAGGAAACAACTTCGCGCGCTCGTAAAGCACTTCTCCAGATCAGGACCATGGAGAGCTCTAAACTGTGGACGAGAGCGGTCGTTTGTACAGCGCTGCTGTCCATCCTATGTGGTGCTGAAACGAGCGACTCAGAAATGGAAGTGGATTTGGAAACGAGAAACATTCACGACTTCTATCCACAAAATCCGAATCTAACGAACGAAAAACGTCTTCTTGGAGCTCTACACGAAGTTCTAAAAAAACTGCAGACCAAAAGAATTAATCCATGGGAAAAGAAATTTGGACAAGTTCCCACTTGCGACGTGGGGGAGCATTGCGCAGTGAGGAAAGGTGCTCGAATCGGCAAAATGTGCGACTGTCCACGGGGAGCTTTCTGCAACTTCTTTCTGTTGAAGTGCTTGTGAATGGAGGTTTATTGGATTCAATCCCCTGTCATTGTGTTATTTAAAAGAAACATATGTCATTATTTTTATGAATATTTTTCAAATACAGGCGGACTATAATTGTCAATGTTATGGTGGGACCACCAATTAGATAATGGTACATCCTATCGTTTGCTGGAGTTAGATTAAACATTTGTGTCACCTAAGTGTTACTGAGCTCTCTATATTGTGCAATAAAGTGTGTCACAACTTATTTCGTAATCATTATTTTTGGTCTCGGAATTCACTTTTTCTAGTTCAATA

Function

NR:

description
cocaine- and amphetamine-regulated transcript protein-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0009267 cellular response to starvation biological_process
GO:0032099 negative regulation of appetite biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0008343 adult feeding behavior biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573503.2 False 970 mRNA 0.40 3 81192564 81194099
TU217319 True 752 TUCP 0.41 3 81192528 81193845

Neighbor

gene id symbol gene type direction distance location
tmem17 znf774 coding downstream 155378 81034004 ~ 81037186 (-)
LOC110497288 znf774 coding downstream 165134 81024623 ~ 81027430 (-)
LOC110497280 LOC106561298 coding downstream 181650 81008700 ~ 81010914 (-)
LOC110497262 cib1 coding downstream 193559 80995022 ~ 80999005 (-)
accs accs coding downstream 416206 80765955 ~ 80776358 (-)
LOC118942622 NA coding upstream 44931 81232166 ~ 81240770 (-)
LOC110497492 mfs11 coding upstream 111982 81306081 ~ 81309081 (-)
sycp3 scp3 coding upstream 119970 81314069 ~ 81323099 (-)
actr6 arp6 coding upstream 137899 81331998 ~ 81338259 (-)
LOC110497501 hakai coding upstream 144325 81338424 ~ 81341814 (-)
G191832 rps17 non-coding downstream 6676 81142424 ~ 81185888 (-)
G191777 paf non-coding downstream 106385 81083561 ~ 81086179 (-)
G191727 LOC106561285 non-coding downstream 139578 81049541 ~ 81052986 (-)
G191669 LOC100380853 non-coding downstream 271688 80915679 ~ 80921415 (-)
G191668 LOC106562530 non-coding downstream 272636 80914658 ~ 80919928 (-)
G191890 NA non-coding upstream 38440 81232539 ~ 81297634 (-)
G192224 NA non-coding upstream 301057 81495156 ~ 81495468 (-)
G192255 NA non-coding upstream 344074 81538173 ~ 81539355 (-)
G192257 NA non-coding upstream 348018 81542117 ~ 81542378 (-)
G190857 NA other downstream 640080 80552127 ~ 80552484 (-)
G189806 NA other downstream 1431937 79760039 ~ 79760627 (-)
G189256 NA other downstream 1825995 79365849 ~ 79366569 (-)
G189093 slc1a2 other downstream 1967566 79223230 ~ 79224998 (-)
G193745 NA other upstream 1707541 82901640 ~ 82912504 (-)
G193755 NA other upstream 1811731 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 2025923 83219964 ~ 83223972 (-)
G194491 NA other upstream 2421467 83615566 ~ 83616034 (-)
G195427 NA other upstream 2687441 83881540 ~ 83904451 (-)

Expression


Co-expression Network