LOC118942622


Basic Information

Item Value
gene id LOC118942622
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81232166 ~ 81240770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038428.1
CGCAGAGTTGACACCGAATGAGTCAAGTGTTGCAACGTTAGCTGTGTTTACATTTTTTGACCAACTGTGCCTTGAAGTTACAGGAGATTGATcaacgaatgcactgtattttcaaTAGTCACGGACAACCCCGTTCTCTTTGTCGGACACTATTGTTTAAAGTGTTCCATTTTAGATAACGTTACTTTATCCAAAACCATCTGTCTCTCACCTTCTGCCGGAGACTGTCCCCATCATCACGTCAGTTTGAGGGACCTTTTGCAGCAAGAAAATACCCTGGAAAGCATACAATGCCCGAAAAGACCAAAACGAATTAAACTGTAGGCCTATAGAAGCCGTCGCAGACACCTTCGTCTTCTGGGCAAGTAGCTCGAGACAAGAACAACGTGGTGACAATTTCAGTGCACGCGAAGCCGGAATCTGAATTGAACGCGATTACAGGTGTACACTTTTTTGTATGCGGAACACTGATGGCAAAATAAACTCCGCTAGTAAAGACTAATTGagtatttagttgttgtttttaccccccccccccccccccccaaaaaaaaaagatgtatttatttattttacgtaGGTAATGTACAATATGTTCATTCCTAGTTGTGTCTATAGTGGCAGTAGGTGTCGCTATTGCCGCACCGCCAACTGATGGGCAGGCTAATGCTGAGCTTGTTCGGTATCTCTCCAAGGTGCTGGCGTTGAAGAGAAGCGAAGTCGTTGTGGACAAGGTTTGAGAGCTATGAATGGACATCTCTGGATTCTTCATGATGCATGTTTATATACTGTGTTGCCAATAACAGAAAAGTTTCAGGAATTTAAACTAAAATGTTTCATCATGTCCTTATGCCTCTCTGCAGGGCTCAAGATACTGAGAATATTGTCAAGGTGGCACTAACTCCAGAGCAGGGGTTGGACAGGTTAAAGCAAGAGGCTGTTTGAATGTTAATTACACCCATAACAGAGGCTTCTCTATGACACCATGGATTACTTTTTAGTTCAGGTCCTATACACCTTCACAGTATTGGTTGATTTTCAGACATCTATGGAAACAGCTCAGTTAAGATAGTAGCCTACTTTATTAATCCCCAAAGGGGACATTTGTTTGCATCAGCTGATGCACACACCAATGAATGCACAATTTGTGACATGCACTATAGTCAAGCATTCTACAAGGATTTTAACTGTATAGGCGTctgaaatatttttttcccaaaactGTTGAAAGAACCCTTGTTTACTGAGGCTTCCTCAGAAATAAATTGCTGTCTTATCATCTgtgacattgttttttttttaagtaaaatttCAATCACAATGAGTCTTGCCTCAGGCATGGCTACTGATATGATTGTTATTGATGTATTATGTTCATACTGAAAAAGTTCACCCAAGTTCTACCTTCACCTCATGAGGTATCTGAGGTATATTTTTTAGCAAATATCTTAGATCATTTAGCCTTTTTTATTCATGCTTTTGTTGCCCCTAAAAcgtgtgttatgtttattttcTTGGACAGCATGTGGGTATTTATTTCTGTATCGAATTGATGTAGTTGTGGTAAATGAAATGAGATATTTGGCAATGGAAATAAAAATGTCAATGACG
>TU217374
GTCAAGTGTTGCAACGTTAGCTGTGTTTACATTTTTTGACCAACTGTGCCTTGAAGTTACAGGAGATTGATcaacgaatgcactgtattttcaaTAGTCACGGACAACCCCGTTCTCTTTGTCGGACACTATTGTTTAAAGTGTTCCATTTTAGATAACGTTACTTTATCCAAAACCATCTGTCTCTCACCTTCTGCCGGAGACTGTCCCCATCATCACGTCAGTTTGAGGGACCTTTTGCAGCAAGAAAATACCCTGGAAAGCATACAATGCCCGAAAAGACCAAAACGAATTAAACTGTAGGCCTATAGAAGCCGTCGCAGACACCTTCGTCTTCTGGGCAAGTAGCTCGAGACAAGAACAACGTGGTGACAATTTCAGTGCACGCGAAGCCGGAATCTGAATTGAACGCGATTACAGGTGTACACTTTTTTGTATGCGGAACACTGATGGCAAAATAAACTCCGCTAGTAAAGACTAATTGagtatttagttgttgtttttggggggggggggggggggggggggggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038428.1 False 1611 mRNA 0.40 2 81239030 81240770
TU217374 True 531 lncRNA 0.45 3 81232166 81240749

Neighbor

gene id symbol gene type direction distance location
cart2 LOC105018397 coding downstream 44931 81192528 ~ 81194099 (-)
tmem17 znf774 coding downstream 201844 81034004 ~ 81037186 (-)
LOC110497288 znf774 coding downstream 211600 81024623 ~ 81027430 (-)
LOC110497280 LOC106561298 coding downstream 228116 81008700 ~ 81010914 (-)
LOC110497262 cib1 coding downstream 240025 80995022 ~ 80999005 (-)
LOC110497492 mfs11 coding upstream 65311 81306081 ~ 81309081 (-)
sycp3 scp3 coding upstream 73299 81314069 ~ 81323099 (-)
actr6 arp6 coding upstream 91228 81331998 ~ 81338259 (-)
LOC110497501 hakai coding upstream 97654 81338424 ~ 81341814 (-)
LOC110497525 LOC106561292 coding upstream 109733 81350503 ~ 81358620 (-)
G191832 rps17 non-coding downstream 53142 81142424 ~ 81185888 (-)
G191777 paf non-coding downstream 152851 81083561 ~ 81086179 (-)
G191727 LOC106561285 non-coding downstream 186044 81049541 ~ 81052986 (-)
G191669 LOC100380853 non-coding downstream 318154 80915679 ~ 80921415 (-)
G191668 LOC106562530 non-coding downstream 319102 80914658 ~ 80919928 (-)
G192224 NA non-coding upstream 254386 81495156 ~ 81495468 (-)
G192255 NA non-coding upstream 297403 81538173 ~ 81539355 (-)
G192257 NA non-coding upstream 301347 81542117 ~ 81542378 (-)
G192258 NA non-coding upstream 302390 81543160 ~ 81543408 (-)
G192259 NA non-coding upstream 304337 81545107 ~ 81545322 (-)
G190857 NA other downstream 686546 80552127 ~ 80552484 (-)
G189806 NA other downstream 1478403 79760039 ~ 79760627 (-)
G189256 NA other downstream 1872461 79365849 ~ 79366569 (-)
G193745 NA other upstream 1660870 82901640 ~ 82912504 (-)
G193755 NA other upstream 1765060 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 1979252 83219964 ~ 83223972 (-)
G194491 NA other upstream 2374796 83615566 ~ 83616034 (-)
G195427 NA other upstream 2640770 83881540 ~ 83904451 (-)

Expression


Co-expression Network