LOC110497525 (LOC106561292)


Basic Information

Item Value
gene id LOC110497525
gene name LOC106561292
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81350503 ~ 81358620 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573668.2
GGGTTTCCGGGTGGAAAGGTTCCATATTACCCAGGAGATTCATTGCCTCTTGCATAGACCTTGTTGAAACATAATGCACAATGTGTTTTTGACAGGCAATGCCTGTGCATAGTACTGCAGTTGTATATTGTTTTGAGAGGGGGTGGAGAAAAGGAGGGATGATTCAGTTAAAGAATCTGGTGAAGAAAGAAACTTAGGTTAAAAGCTAACTGGATCAACCTGACTAGCAACCAGCTGCATTTGCTCTTTTGTGTTTTTCATAAGGGGATTCTCATACAGGCAACAGGAGAGAGAGTAATCAGATATCATGCTCACTGTACGCATAGGACAAATGATGCATAAAACACAGGGCTCCAGAAGCCTTCTTCCAATCATAGCAGTGCTTGGAATCATTTTCTTTGCTGTTTTCCTCATAATGCGGTCTCAAAGCCACACCCTCTCCTGGTATCCTGAGTTTCCTGGTCCAGAGTGGCTACAGGTGACTAATGTACCCAAAGAGACCACCTCCAGACAAAGACCGTGTGGCATCCCAAAGCCCTGTCCAGAGGGGGACTTCAGCTTTTTAATCGCCAGTGGAGCTGCTAATGTGGTTGGACCCAAAATCTGCATGGAGGACAAAATggttatgggttatgtgGAAGAAAATGTTGGGTATGGAATTAACATTGCTGTTGTGAACGGGAAGACTGGGGAGGGTATGAAGACAGCATTTTTTAACATGTATGATGGTGATATTGAACCTCTGGTGGAGTTTCTGGAGTCCATTGAGAATGGATCCATTGTGTTGATTGCCACCTACGACGACCCAGCTACAAAATTGAACGAAGAAGCAAGGAGGCTTATCAGAGAGCTTGGCAGCTCTGCTATCCAGTCATTAGGCTTCAGAGACAACTGGGTCTTTGTTGGAGGAAAAGGAGCAGATGTCGAGAGTACCTTGGAGAAGCATATTAAAAACAATAGAGACAAAAACAAGTATGACTCCTGGCCAGAGATGATTGAATTGCAAGGATGCTTACCACGCTATTTGGAGTGATTGGTAC
>XM_021573676.2
GCGGCTGCAGCCTCCAGTGCAGTGAGCAGAGGGTTTCCGGGTGGAAAGGTTCCATATTACCCAGGAGATTCATTGCCTCTTGCATAGACCTTGTTGAAACATAATGCACAATGTGTTTTTGACAGGCAATGCCTGTGCATAGTACTGCAGTTGTATATTGTTTTGAGAGGGGGTGGAGAAAAGGAGGGATGATTCAGTTAAAGAATCTGGTGAAGAAAGAAACTTAGGTTAAAAGCTAACTGGATCAACCTGACTAGCAACCAGCTGCATTTGCTCTTTTGTGTTTTTCATAAGGGGATTCTCATACAGGCAACAGGAGAGAGAGTAATCAGATATCATGCTCACTGTACGCATAGGCCTTCTTCCAATCATAGCAGTGCTTGGAATCATTTTCTTTGCTGTTTTCCTCATAATGCGGTCTCAAAGCCACACCCTCTCCTGGTATCCTGAGTTTCCTGGTCCAGAGTGGCTACAGGTGACTAATGTACCCAAAGAGACCACCTCCAGACAAAGACCGTGTGGCATCCCAAAGCCCTGTCCAGAGGGGGACTTCAGCTTTTTAATCGCCAGTGGAGCTGCTAATGTGGTTGGACCCAAAATCTGCATGGAGGACAAAATggttatgggttatgtgGAAGAAAATGTTGGGTATGGAATTAACATTGCTGTTGTGAACGGGAAGACTGGGGAGGGTATGAAGACAGCATTTTTTAACATGTATGATGGTGATATTGAACCTCTGGTGGAGTTTCTGGAGTCCATTGAGAATGGATCCATTGTGTTGATTGCCACCTACGACGACCCAGCTACAAAATTGAACGAAGAAGCAAGGAGGCTTATCAGAGAGCTTGGCAGCTCTGCTATCCAGTCATTAGGCTTCAGAGACAACTGGGTCTTTGTTGGAGGAAAAGGAGCAGATGTCGAGAGTACCTTGGAGAAGCATATTAAAAACAATAGAGACAAAAACAAGTATGACTCCTGGCCAGAGATGATTGAATTGCAAGGATGCTTACCACGCTATTTGGAGTGATTGGTAC

Function

NR:

description
protein FAM3C-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573668.2 False 1040 mRNA 0.44 10 81350503 81358590
XM_021573676.2 True 1037 mRNA 0.45 9 81350503 81358620

Neighbor

gene id symbol gene type direction distance location
LOC110497501 hakai coding downstream 8689 81338424 ~ 81341814 (-)
actr6 arp6 coding downstream 12244 81331998 ~ 81338259 (-)
sycp3 scp3 coding downstream 27404 81314069 ~ 81323099 (-)
LOC110497492 mfs11 coding downstream 41422 81306081 ~ 81309081 (-)
LOC118942622 NA coding downstream 109733 81232166 ~ 81240770 (-)
LOC110497515 LOC106561283 coding upstream 326 81358946 ~ 81373620 (-)
LOC110497549 LOC106561290 coding upstream 31304 81389924 ~ 81392624 (-)
LOC110497556 LOC100380647 coding upstream 55449 81414069 ~ 81475545 (-)
LOC110497573 NA coding upstream 209294 81567914 ~ 81580865 (-)
trnar-ucg-2 NA coding upstream 226353 81584973 ~ 81585045 (-)
G191890 NA non-coding downstream 52869 81232539 ~ 81297634 (-)
G191832 rps17 non-coding downstream 164615 81142424 ~ 81185888 (-)
G191777 paf non-coding downstream 264324 81083561 ~ 81086179 (-)
G191727 LOC106561285 non-coding downstream 297517 81049541 ~ 81052986 (-)
G192224 NA non-coding upstream 136536 81495156 ~ 81495468 (-)
G192255 NA non-coding upstream 179553 81538173 ~ 81539355 (-)
G192257 NA non-coding upstream 183497 81542117 ~ 81542378 (-)
G192258 NA non-coding upstream 184540 81543160 ~ 81543408 (-)
G192259 NA non-coding upstream 186487 81545107 ~ 81545322 (-)
cart2 LOC105018397 other downstream 156658 81192528 ~ 81194099 (-)
G191669 LOC100380853 other downstream 429088 80915679 ~ 80921415 (-)
G190857 NA other downstream 798019 80552127 ~ 80552484 (-)
G189806 NA other downstream 1589876 79760039 ~ 79760627 (-)
G189256 NA other downstream 1983934 79365849 ~ 79366569 (-)
G193745 NA other upstream 1543020 82901640 ~ 82912504 (-)
G193755 NA other upstream 1647210 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 1861402 83219964 ~ 83223972 (-)
G194491 NA other upstream 2256946 83615566 ~ 83616034 (-)
G195427 NA other upstream 2522920 83881540 ~ 83904451 (-)

Expression


Co-expression Network