Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110497727 |
| gene name | ube2n |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 82731023 ~ 82740774 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ube2n | Enables ubiquitin binding activity; ubiquitin protein ligase binding activity; and ubiquitin-protein transferase activity. Involved in several processes, including DNA repair; protein ubiquitination; and regulation of protein modification process. Located in cytoplasm; fibrillar center; and nucleoplasm. Part of UBC13-MMS2 complex; UBC13-UEV1A complex; and ubiquitin ligase complex. |
| description |
|---|
| PREDICTED: ubiquitin-conjugating enzyme E2 N |
| id | name | namespace |
|---|---|---|
| GO:0006301 | postreplication repair | biological_process |
| GO:0045739 | positive regulation of DNA repair | biological_process |
| GO:0051443 | positive regulation of ubiquitin-protein transferase activity | biological_process |
| GO:0033182 | regulation of histone ubiquitination | biological_process |
| GO:0042769 | DNA damage response, detection of DNA damage | biological_process |
| GO:0031058 | positive regulation of histone modification | biological_process |
| GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0000209 | protein polyubiquitination | biological_process |
| GO:0000724 | double-strand break repair via homologous recombination | biological_process |
| GO:0000729 | DNA double-strand break processing | biological_process |
| GO:0051092 | positive regulation of NF-kappaB transcription factor activity | biological_process |
| GO:0050852 | T cell receptor signaling pathway | biological_process |
| GO:0031372 | UBC13-MMS2 complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0043130 | ubiquitin binding | molecular_function |
| id | description |
|---|---|
| K10580 | UBE2N, BLU, UBC13; ubiquitin-conjugating enzyme E2 N |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021574051.2 | True | 1974 | mRNA | 0.43 | 5 | 82731023 | 82740774 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110497714 | LOC106561424 | coding | downstream | 702 | 82699270 ~ 82730321 (-) |
| LOC110497706 | LOC106561425 | coding | downstream | 40834 | 82647383 ~ 82690189 (-) |
| LOC110497694 | LOC100196824 | coding | downstream | 131642 | 82429358 ~ 82599381 (-) |
| LOC110497676 | bhlh3 | coding | downstream | 325621 | 82401099 ~ 82405402 (-) |
| LOC110497629 | rask | coding | downstream | 377647 | 82340624 ~ 82353376 (-) |
| LOC110497735 | LOC106561422 | coding | upstream | 16957 | 82757731 ~ 82790510 (-) |
| slc17a8 | LOC106561421 | coding | upstream | 66012 | 82806786 ~ 82848071 (-) |
| LOC110497815 | ric8b | coding | upstream | 267346 | 83008120 ~ 83022102 (-) |
| LOC110502165 | LOC106561413 | coding | upstream | 286280 | 83027054 ~ 83057970 (-) |
| LOC110497820 | polr3b | coding | upstream | 328245 | 83069019 ~ 83111214 (-) |
| G193646 | NA | non-coding | downstream | 24188 | 82697955 ~ 82706835 (-) |
| G193640 | NA | non-coding | downstream | 32789 | 82667391 ~ 82698234 (-) |
| G193532 | NA | non-coding | downstream | 359734 | 82356820 ~ 82371289 (-) |
| G193123 | NA | non-coding | downstream | 402885 | 82327782 ~ 82328138 (-) |
| G193118 | NA | non-coding | downstream | 412854 | 82317966 ~ 82318169 (-) |
| G193683 | NA | non-coding | upstream | 57692 | 82798466 ~ 82798694 (-) |
| G193684 | NA | non-coding | upstream | 58255 | 82799029 ~ 82799245 (-) |
| G193735 | NA | non-coding | upstream | 144429 | 82885203 ~ 82889796 (-) |
| G193780 | LOC106561419 | non-coding | upstream | 203578 | 82944352 ~ 82945094 (-) |
| G193786 | NA | non-coding | upstream | 211958 | 82952732 ~ 82954510 (-) |
| cart2 | LOC105018397 | other | downstream | 1537178 | 81192528 ~ 81194099 (-) |
| G191669 | LOC100380853 | other | downstream | 1809608 | 80915679 ~ 80921415 (-) |
| G190857 | NA | other | downstream | 2178539 | 80552127 ~ 80552484 (-) |
| G189806 | NA | other | downstream | 2970396 | 79760039 ~ 79760627 (-) |
| G189256 | NA | other | downstream | 3364454 | 79365849 ~ 79366569 (-) |
| G193745 | NA | other | upstream | 160866 | 82901640 ~ 82912504 (-) |
| G193755 | NA | other | upstream | 265056 | 83005830 ~ 83007976 (-) |
| LOC110502187 | NA | other | upstream | 479248 | 83219964 ~ 83223972 (-) |
| G194491 | NA | other | upstream | 874792 | 83615566 ~ 83616034 (-) |
| G195427 | NA | other | upstream | 1140766 | 83881540 ~ 83904451 (-) |
