slc17a8 (LOC106561421)


Basic Information

Item Value
gene id slc17a8
gene name LOC106561421
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82806786 ~ 82848071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574127.2
GTGACGTGACCCATTCCATGCTAGGAGTTCTATCTGGTGCCTTGGACCTTGAGGTGTACATCTGCACACCCTTAGCCTCAACAAGAacaccctccacctccacctagtCATTCCTCACTGTGCCCATCATCCCCTTGTATCCCAGTCTGATCCCCTGGTCAcgccagagagaggcagacagcacAAGCCCATCTCACATCTGAGGAACGTCTGAGGGACCCGTGGCACCACACAAAGGCGGAGCCAGCCCCATGGTGCATAAGAACTCAGGAAAGATGAGCAACCACATCTAGCAGAtcttttttgtgtttttcagagcaAAGTGTGCAAGAAATAGGGGGAGAGACATACTACTGTGAAATAAAGAGAGTGAACaggacagggagaaacagaagaggaTGCCTTTTGGGGGGTTTTCGGGGCTGAAGGAGCGGGTTCTGAAACCAGGGAAGGAGGAGGTGAAGAATACAGTAGGAGACGGTCTGGGGAACCTGCAGAGGAAAATTGATGGGACCAATGTGGACGAGGATGACCAGATGGAGCTCACGGAGGACGGGCAACCGGTGGCTCCTCGCCACAATGCCCCTCTGTTTGACTGCGGTTGCTGCGGCCTGCCCAAGCGCTACATCATCGCCATTCTCAGCGGACTGGGCTTCTGCATCTCCTTTGGCATCCGTTGCAACCTGGGGGTGGCCATTGTGGAGATGGTCAACAACAACACAGTCTACATCAATGGGACACCTGTACTccagCCAGCTCAATTCAACTGGGACCCAGAGACTGTGGGACTGATCCATGGCTCCTTCTTCTGGGGTTACATCGTCACACAGATCCCTGGAGGCTTCATCTCCAACAAGCTGGCCGCCAACAGAGTGTTTGGGGCGGCCATTTTTCTCACGTCCATACTGAATATGTTCATCCCTTCAGCAGCCAGAAGGCACTACGGCTGTGTCATGTTAGTCCGCATCCTGCAAGGCTTGGTGGAGGGTGTTACCTACCCTGCATGCCATGGGATGTGGGCCAAATGGGCCCCTCCCCTGGAGAGAAGTCGACTGGCCACCACCTCATTCTGTGGTTCCTATGCAGGTGCTGTGATTGCCATGCCTTTAGCAGGAGTCCTGGTTCAGTTTGTTGGATGGCCCTCGGTCTTCTATATCTATGGTGTATTTGGGATTATATGGTACATCTTCTGGCTCCTGCTTGCCTATGGGAGCCCAGCCGCCCACCCCACTATAAGCGATGAGGAGAGGATCTACATAGAGACCACCATTGGCGTGGGTGTCAAAATATTGAGCTCCACTGAGAAATTCAAGACTCCATGGCGCCGTTTCTTCACCTCCATGCCTGTCTATGCCATCATCGTGGCTAACTTCTGCCGTAGCTGGACCTTCTATCTGCTCCTCATCAGCCAGCCAGCCTACTTTGAGGAGGTGTTTGGCTTCTCCATCGGCAAGGTGGGGCTCCTGTCTGCTGTGCCTCACATGGTGATGACCATCGTAGTGCCCATCGGTGGCCAGCTAGCCGACTTCCTACGCAGTCGTAAAATCATGTCAACTACAAACGTCCGGAAAATCATGAACTGCGGAGGTTTTGGAATGGAGGCGACTCTGCTGCTGGTGGTGGGGTTCAGTCACACACGTGGGGTTGCCATATCCTTCCTGGTGCTAGCTGTGGGTTTCAGTGGCTTTGCCATCTCAGGGTTCAATGTAAACCACCTGGACATTGCTCCTCGCTATGCCAGTATCCTAATGGGCATCTCCAATGGTGTTGGCACACTGTCTGGAATGGTGTGCCCCCTTATTGTTGGAGCACTGACTAAACACAAGACCCGTCTGGAGTGGCAGAACGTGTTTGTGATAGCCGCCATGGTGCACTACACAGGGGTCATCTTCTATGCTATCTTCGCCTCAGGCGACAAGCAGGAATGGGCAGAACAAGAGAGCACCAGCGAAGATAAGGTCGGTATTATCGACGAGGATGAGCTGGCCGAAGAGACAGAGCTCAACAGCGAGATTGCCATGGTACCCAAGAAAAGCTATGGAACCACAGAGAACTCATCGGGTCGCAAACAGGGCTGGAAGAAGAACAGAGGAGTCACCATGCAGGAGGATAAGGATGATGGGAACTCGCACCACGGGAATGGGAACTACCAGGAGCAGTTTCAGTGATGCGCCCTAATAATCAGGGGCATTGGCTGTATAGATTCTCCAAATTTTTCCTGGagtgtgcacttgcacacttTCTCGCATAGAAAACCTGAGGAAACCAGAGGAGGCTTAATGGGAGGAGCtttaggaggatgggctcattgtaatggctggaatgcaaTGAATGGTACgaagtcaaacatgtggtttccatatattTTATGTGATTGATAcctttccatttattccattccaacTCCTACAATgaacccgtcctcctatagctccaccCACATGTCTCCTCTGGTGGAAACTCCCTCCAGTCAATGCTTACACCAATCGTATGCTTTTATATCCATGACATGGAGTGTGCAAATGCCCACTTCTGGAAAAGGTTATAGAACCAGGACACAAAAGTATCTCTATTGACCCCCTATTCACTGTGCACTActactacagggaatagggtggcacAGTCACTTGAGCAGCACTGCAGGACTTCCCCTTCACGTCAACGTCCAGTGAAGGAAGAAGAGTAAAATTCACACAGCCCGGCAGAACTATCAGTGATCATTCTTCTGAGAAGTTACAAAAGAAGTTACAGCATCTATCATTTACCACAAACTGaccttttgttgttgtttggtCATTTGTGATGACCACCTCTATTCGGTCTTATGtggcaaaatttgaaattgtgttttttacatagGATAAAAGTAGAGcgtcagagctacaaaatggcaCATCATACACTGccgttgaggaacaatgggaaagtaat

Function

NR:

description
vesicular glutamate transporter 3

GO:

id name namespace
GO:0050957 equilibrioception biological_process
GO:0055085 transmembrane transport biological_process
GO:0060005 vestibular reflex biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12302 SLC17A6_7_8; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6/7/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574127.2 True 2931 mRNA 0.51 12 82806786 82848071

Neighbor

gene id symbol gene type direction distance location
LOC110497735 LOC106561422 coding downstream 16276 82757731 ~ 82790510 (-)
LOC110497727 ube2n coding downstream 66012 82731023 ~ 82740774 (-)
LOC110497714 LOC106561424 coding downstream 76465 82699270 ~ 82730321 (-)
LOC110497706 LOC106561425 coding downstream 116597 82647383 ~ 82690189 (-)
LOC110497694 LOC100196824 coding downstream 207405 82429358 ~ 82599381 (-)
LOC110497815 ric8b coding upstream 160049 83008120 ~ 83022102 (-)
LOC110502165 LOC106561413 coding upstream 178983 83027054 ~ 83057970 (-)
LOC110497820 polr3b coding upstream 220948 83069019 ~ 83111214 (-)
LOC118936835 NA coding upstream 266282 83114353 ~ 83121120 (-)
LOC110497842 LOC106561444 coding upstream 307609 83155680 ~ 83169035 (-)
G193684 NA non-coding downstream 7541 82799029 ~ 82799245 (-)
G193683 NA non-coding downstream 8092 82798466 ~ 82798694 (-)
G193646 NA non-coding downstream 99951 82697955 ~ 82706835 (-)
G193640 NA non-coding downstream 108552 82667391 ~ 82698234 (-)
G193532 NA non-coding downstream 435497 82356820 ~ 82371289 (-)
G193735 NA non-coding upstream 37132 82885203 ~ 82889796 (-)
G193780 LOC106561419 non-coding upstream 96281 82944352 ~ 82945094 (-)
G193786 NA non-coding upstream 104661 82952732 ~ 82954510 (-)
G193789 NA non-coding upstream 110140 82958211 ~ 82958468 (-)
G193792 LOC106561416 non-coding upstream 116654 82964725 ~ 82967122 (-)
cart2 LOC105018397 other downstream 1612941 81192528 ~ 81194099 (-)
G191669 LOC100380853 other downstream 1885371 80915679 ~ 80921415 (-)
G190857 NA other downstream 2254302 80552127 ~ 80552484 (-)
G189806 NA other downstream 3046159 79760039 ~ 79760627 (-)
G189256 NA other downstream 3440217 79365849 ~ 79366569 (-)
G193745 NA other upstream 53569 82901640 ~ 82912504 (-)
G193755 NA other upstream 157759 83005830 ~ 83007976 (-)
LOC110502187 NA other upstream 371951 83219964 ~ 83223972 (-)
G194491 NA other upstream 767495 83615566 ~ 83616034 (-)
G195427 NA other upstream 1033469 83881540 ~ 83904451 (-)

Expression


Co-expression Network