si:dkey-103i16.6 (LOC106561415)


Basic Information

Item Value
gene id si:dkey-103i16.6
gene name LOC106561415
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82978247 ~ 83002869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574195.2
AGAGAAGGATTTTCCCGCACTGAAAGCTGGAAGTGACGTACTTCCTTCGCGGTAAATGGTGCTGCGTGCGACAGATGCCAGCGGAAAAATACAGCAACACAGAAATCTAAACAGGTGCAATTCAAACTTTCTTCGGAGCTGCTGGCCAAGTAGAAGTTGTCACTATGTTGCACGCGTCACAGTCTGCATGTTGATGTAGAACGTCCCTTGTTGCGCAACATCTTCAACGCGCGCCTTccatcccatcagctttctaaaGTTCCGCCCTCTGGAAAGACAGGTGGAAATATGAGCAAGGCCAGATCCAGCAGGGTGACCCGTAGCTCCACCCCCCAGGCCTGGCACACAGAGCCGCCCCAGGACTCTGGGCCTGGCCCACATGGGACCCAGCAGAGGAAGCAGACAGACTCAGCCCTACCCCTGGCCCAGGACCTCAGTCAAATGAGTGTGAGTGGACAGGACACCTCACTACCACGGAAAGGGAGGGTGTCTAAGGGCAGCAGTGGCCCCATCCAGGGGGGTCCGTCGTCCTCTGGCTCTAAGCCTACACAGAGCTCCCCCTCTGGGCCGGCAATGAATCCCTCTCCCCGGGGAGGCCTGGCTGCTGTGGCTCGACTGGTGAAACTGGGGCGCTGTAAGAACGTGGTGGTAGTGGCCGGTGCAGGCATCAGTACGGCCAGCGGTATCCCAGACTTTAGGACCCCGGGCACAGGGCTGTATGCCAACTTGGCCAAGTACAACATCCCCTACCCGGAGGCCATCTTCAACATCGAGTACTTCTCCAATGACCCTCGGCCCTTCTTCTCCCTGGCCAAGGAGTTGTACCCAGGCAGTCACCGACCCAACTACATCCACTACTTCATCCACATGCTGCACCTCAAGGGCCTGCTGCTCCGCATGTACACCCAGAACATTGACGGCCTGGAGAAGATAAGTGGCATCCCAGACGAGAAGCTGGTGGAGGCTCATGGAAGTTTTGCGACTGCTTCCTGTCACCTGTGCTACACCCCATTCCCTGCCCAGGAGGCCAAGAGTGCCATAATGAGTGACAAGGTCCCGGTCTGTACATTCTGCCAGGCCACGGTCAAACCGGACATAGTGTTCTTTGGAGAGGACCTTCCTGAGAAGTACTTCCTGCATTCTAAAGACTTCCCTAAAGCTGACCTGCTCATCATCATGGGCACGTCTTTACAGATCGAGCCCTTTGCCAGCCTGGTGAACACAGTGAGGTCCACAGTTCCGCGGCTGCTCCTGAACCGGGACGCAGTGGGTCCCTTTCAGAAGGTGCCCCTGAGGAGGGGCGACTACATAGAGCTGGGGGACCTGGTGGACACGGTCAGGAGGTTTGGTGAATTCCTAGGGTGGCATTCCGAGATCCAAGACCTGATGACCAGTCAGGAAAATGGGACCATCCCTACTCTGGTAAGCAATGTTTCATCAGGAAGGGGCCGAGAAGGGCCCACCCAGACCAAAGCCACTGGCCTGGGGAGGAGAGGGGCATCAGAGCCCCGAGGAAGGTTGCCCCCTAAATCCAGGCCAGGGGCCCGTGGCCCCACCAACGGCAGCAGTGAGAGCGACTCCGAGTCAGACAGCAAGAGCATAGTTTCATCCAGCCCAAGTCACTTGTACACCCGTCTATGCAGTACCCCTCTGGGATTCAACACTTCACATTTTGAATTAAAGACCATTGAGCACTTGTATTTTCAGGACAAAAGATGAAATTatccttttttaaatgttttgactTATGAATGGACTAGTAGGGCAGTTTCCTTTTTTCATCATCCTCATGAAAGGTTCAGAAGTTAACGCCAGGATAAGGGTTGTCCTTAATTCATGTGGTTTTAACTGTATACTTCATGTATTCCTTTTGGTTAGATTTATTTTGGACAGGACTGTATTGTTATTAATTGtacaaaaatacatatttaataaATTAAACTTAGCCTTTTG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006476 protein deacetylation biological_process
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11121 SIR2; NAD+-dependent protein deacetylase SIR2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574195.2 True 1953 mRNA 0.53 9 82978247 83002869

Neighbor

gene id symbol gene type direction distance location
LOC110497803 LOC106561416 coding upstream 4472 82964528 ~ 82973775 (+)
ppfibp1b LOC106561419 coding upstream 24136 82893769 ~ 82954111 (+)
arntl2 LOC106561420 coding upstream 88374 82855917 ~ 82889873 (+)
LOC110497777 NA coding upstream 151489 82805540 ~ 82826762 (+)
LOC110497717 LOC106561423 coding upstream 222730 82739598 ~ 82755517 (+)
LOC110497829 LOC106561410 coding downstream 113219 83116088 ~ 83118600 (+)
LOC110497837 tmem263 coding downstream 116352 83119221 ~ 83124965 (+)
LOC110502176 cry1 coding downstream 200493 83203362 ~ 83204801 (+)
LOC110497849 mterf2 coding downstream 211360 83214229 ~ 83216248 (+)
LOC110497874 btbd11 coding downstream 238400 83241269 ~ 83344652 (+)
G193474 NA non-coding upstream 23190 82954831 ~ 82955057 (+)
G193415 NA non-coding upstream 176689 82801266 ~ 82801558 (+)
G193393 LOC106561422 non-coding upstream 199752 82771215 ~ 82778495 (+)
G193392 NA non-coding upstream 221468 82756434 ~ 82756779 (+)
G193513 NA non-coding downstream 18927 83021796 ~ 83022094 (+)
G193857 NA non-coding downstream 89207 83092076 ~ 83092412 (+)
G193855 polr3b non-coding downstream 93695 83096564 ~ 83099389 (+)
G193853 NA non-coding downstream 102063 83104932 ~ 83105834 (+)
G193880 LOC106613263 non-coding downstream 125254 83128123 ~ 83128591 (+)
G193339 LOC106561425 other upstream 323817 82652633 ~ 82654430 (+)
LOC110497686 NA other upstream 556065 82417794 ~ 82426875 (+)
G193170 bhlh3 other upstream 574412 82401113 ~ 82403835 (+)
LOC110497665 LOC106561427 other upstream 589726 82366183 ~ 82393779 (+)
LOC110497320 paf other upstream 1892067 81083756 ~ 81086188 (+)
G194395 NA other downstream 556051 83558920 ~ 83559598 (+)
G195155 NA other downstream 1593541 84596410 ~ 84600324 (+)
LOC110498034 LOC106573178 other downstream 2007595 85010068 ~ 85054392 (+)
G197069 NA other downstream 3132747 86135616 ~ 86136608 (+)

Expression


Co-expression Network