LOC110497829 (LOC106561410)



Basic Information


Item Value
gene id LOC110497829
gene name LOC106561410
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83116088 ~ 83118600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021574253.2
taggttagtgGGCTCTTGTGGTGTGGTTTTGACAAATCTGGTTTAGCTAAAACTTAATGGTTGATATGAAATATTTTTGACTGTTTGCACTTGTGATTTACATGAAGAATCTGTTGAACTGTTTCAGGATTTGGTCAAGTGTTCATTCCTCAATTATATTCCATTTGTAGCTGCTGAACAATGAGGGAGTGCATTTCTATACACATTGGTCAAGCAGGTGTCCAGATGGGCAATGCATGTTGGGAGTTGTATTGCCTGGAGCATGGTTTCCAACCAGATGGGAGACTACATGAATCCAGTACTGCTTCCCTGGCTGATTCCTCGTTTGGTACCTTCTTCAGTGAGACTGGCAGTGGGAAATATGTTCCCAGGGCTGTCTTCATAGATTTGGAGCCTACAGTTGTGGATGAAATAAGGAATGGACACTACCGTCAGCTTTATCACCCTGAACAACTCATCAGTGGCAAGGAGGATGCTGCCAATAACTACGCACGTGGCCATTACACAATTGGCAAGGAGATTGTGGAATCTGTACTGGACAGAATGCGTAAAATGGCTGACCTGTGCATTGGACTACAAGGATTCCttatatttcatagttttggagGTGGGACTGGCTCTGGCTTCGCTTCGCTCTTAATGGAGCGCCTGTCTGTAGATTACGGGAAGAAGTCCAAACTGGAATTCTCAGTCTACCCTGCACCCCAAGTGTCCACAGCAGTTGTGGAGCCCTACAACTCCATCCTGACAACTCATACCACTCTGGAGCACTCGGATTGCTCTTTCATGGTGGACAATGAGGCCATCTTTGACATCTGCAAGCGTAATCTTGGTGTGGAGCGTCCATCTTACACCAATCTGAACCGCCTCGTTGCCCAGATCGTCTCCTCAATTACTGCCTCTTTGCGCTTTGATGGCGCACTCAATGTGgatctgacagagttccagaccaACCTGGTTCCTTATCCCCGTATCCACTTCCCCCTGGTCACTTATGCTCCCATCATCTCAGCAGAAAGGGCCTATCACGAGCAACTCTCTGTTCCTGAGATCACAAATGCCTGCTTTGAACCGGCTAACCAGATGGTAAAGTGTGATCCCAGGCATGGCAAGTACATGGCCTGCTGCTTGCTGTACCGTGGTGACGTGGTGCCCAAAGATGTCAACGCAGCCATCGCCCACATCAAGACCCGCAAATCCATCCAATTTGTGGATTGGTGTCCGACAGGTTTCAAGGTGGGGATCAACTACCAGCCGCCTACTGTTGTGCCTGGGGGTGATCTGGCCAAGGTGCAGAGAGCTGTGTGCATGCTGAGTAACACCACAGCTATTGCAGAGGCTTGGAGTCGTCTGGACCACAAGTTTGACCTGATGTATGCCAGGCGGGCCTTTGTGCACTGGTATGTGGGTGAAGGCATGGAGGAGGGGGAGTTCTCTGAGGCCAGAGAGGACATGGCTGCTCTGGAGAAGGATTATGAAGAGGTGGGGGCAGACTCTGGTGCTGGTTGTGAGGCGGAAGAGGATGAATACTAAATCTGCCTCCCAACCAGCATTTCTACTTGTTCTCCAAGCAGCCTCGTGTCTACTTATAATAAAACTCAGTGTTTGAATTCTTGCATGTGTCATttacttttgatttttttttttacttgataAAGCAGACGATTTGGTTGGCAGGTGTGAATGTGTATAACTGGAATGAAAAGGTCCTGGAATGGCGCATAAGCTTTGTGGGTGTCATGGAAGATTAGCCTTGACAAGATGGTGGGAGTTGTTGGTACATCTGCCCAGAAAATTGTGTGCATTCTGACTACTTGACTGTAGTGAAGCCTTAAACTGCATCTTGCACCATTAATTATGATGGGTAGGAGTATCTTAATT

Function


NR:

description
tubulin alpha chain-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021574253.2 True 1881 mRNA 0.47 4 83116088 83118600

Neighbor


gene id symbol gene type direction distance location
si:dkey-103i16.6 LOC106561415 coding upstream 113219 82978247 ~ 83002869 (+)
LOC110497803 LOC106561416 coding upstream 142313 82964528 ~ 82973775 (+)
ppfibp1b LOC106561419 coding upstream 161977 82893769 ~ 82954111 (+)
arntl2 LOC106561420 coding upstream 226215 82855917 ~ 82889873 (+)
LOC110497777 NA coding upstream 289330 82805540 ~ 82826762 (+)
LOC110497837 tmem263 coding downstream 621 83119221 ~ 83124965 (+)
LOC110502176 cry1 coding downstream 84762 83203362 ~ 83204801 (+)
LOC110497849 mterf2 coding downstream 95629 83214229 ~ 83216248 (+)
LOC110497874 btbd11 coding downstream 122669 83241269 ~ 83344652 (+)
LOC110502210 LOC106561405 coding downstream 259047 83377647 ~ 83395033 (+)
G193853 NA non-coding upstream 10254 83104932 ~ 83105834 (+)
G193855 polr3b non-coding upstream 16699 83096564 ~ 83099389 (+)
G193857 NA non-coding upstream 23676 83092076 ~ 83092412 (+)
G193513 NA non-coding upstream 93994 83021796 ~ 83022094 (+)
G193474 NA non-coding upstream 161031 82954831 ~ 82955057 (+)
G193880 LOC106613263 non-coding downstream 9523 83128123 ~ 83128591 (+)
G193886 NA non-coding downstream 13673 83132273 ~ 83132488 (+)
G193905 NA non-coding downstream 35660 83154260 ~ 83154472 (+)
G193912 NA non-coding downstream 45940 83164540 ~ 83164868 (+)
G193916 NA non-coding downstream 48498 83167098 ~ 83167307 (+)
G193339 LOC106561425 other upstream 461658 82652633 ~ 82654430 (+)
LOC110497686 NA other upstream 693906 82417794 ~ 82426875 (+)
G193170 bhlh3 other upstream 712253 82401113 ~ 82403835 (+)
LOC110497665 LOC106561427 other upstream 727567 82366183 ~ 82393779 (+)
LOC110497320 paf other upstream 2029908 81083756 ~ 81086188 (+)
G194395 NA other downstream 440320 83558920 ~ 83559598 (+)
G195155 NA other downstream 1477810 84596410 ~ 84600324 (+)
LOC110498034 LOC106573178 other downstream 1891864 85010068 ~ 85054392 (+)
G197069 NA other downstream 3017016 86135616 ~ 86136608 (+)

Expression



Co-expression Network