LOC110502176 (cry1)


Basic Information

Item Value
gene id LOC110502176
gene name cry1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83203362 ~ 83204801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934286.1
ATGGCCCCTGGTACCTCTGGCGCCTCACAGATCATCAAGCTAAACGGAGGCCAGTCCCCTCTCACCTACAAGAGTTTCCAGGCGCTCATCAGTCACATGGATGCCGTGGAATCACCCACTGAGATCATCACTGCTGAGGTCATGAGGAAGTGTGCCACGCCCATCAGTGATGACCATGACGACAAGTTTGCCGTGCCCTCCCTGGAGGAGCTTGGCTTTGAGACCGAAGGCCTGGCTACAGCAGTATGGccagggggagagatggaggcccTCACTCGCCTGGAGAGGCACCTGGAGAGAAAGGCATGGGTGACCAACTTTGAGCGTCCCAGGATGAACGCCAACTCCCTGCTGGCCAGCCCCACAGGCCTCAGCCCCTACCTCCGCTTCGGCTGCCTCTCCTGTCGCCTCTTTTACTTCAAACTCACTGACCTCTACAGGAAGATGAAGAAAAACAGCTCACCGCCCCTCTCGCTCTATGGCCAGCTGTTGTGGCGCGAGTTCTTCTACACCACAGCCACCAACAACCCCCGCTTCGACAAAATGGAGGGCAATCTGGTGTGTGTGCAGATCCCCTGGGACCGCAACCTGGAAGCGCTGGCCAAGTGGGCCAAGGGGAGGACAGGGTTCCCCTGGATTGACGCCATCATGACCCAGCTGAGACAGGAGGGCTGGATCCACCACCTGGCCAGACATGCTGTTGCCTGCTTTCTCACTAGAGGAGACCTGCGGATCAGCTGGGAGGAGGGCATGAAGGTAGATACTGGGGGAAGGAGATGTTAG

Function

symbol description
cry1 Enables double-stranded DNA binding activity; nuclear receptor binding activity; and phosphatase binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. Implicated in advanced sleep phase syndrome.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934286.1 True 783 mRNA 0.58 3 83203362 83204801

Neighbor

gene id symbol gene type direction distance location
LOC110497837 tmem263 coding upstream 79566 83119221 ~ 83124965 (+)
LOC110497829 LOC106561410 coding upstream 84762 83116088 ~ 83118600 (+)
si:dkey-103i16.6 LOC106561415 coding upstream 200493 82978247 ~ 83002869 (+)
LOC110497803 LOC106561416 coding upstream 229587 82964528 ~ 82973775 (+)
ppfibp1b LOC106561419 coding upstream 249251 82893769 ~ 82954111 (+)
LOC110497849 mterf2 coding downstream 9428 83214229 ~ 83216248 (+)
LOC110497874 btbd11 coding downstream 36468 83241269 ~ 83344652 (+)
LOC110502210 LOC106561405 coding downstream 172846 83377647 ~ 83395033 (+)
LOC110497881 LOC106561403 coding downstream 196158 83400959 ~ 83408768 (+)
LOC110497890 LOC106561402 coding downstream 205412 83408936 ~ 83422350 (+)
G193930 NA non-coding upstream 15939 83187193 ~ 83187423 (+)
G193923 NA non-coding upstream 23013 83180018 ~ 83180349 (+)
G193916 NA non-coding upstream 36055 83167098 ~ 83167307 (+)
G193912 NA non-coding upstream 38494 83164540 ~ 83164868 (+)
G193905 NA non-coding upstream 48890 83154260 ~ 83154472 (+)
G193954 NA non-coding downstream 12321 83217122 ~ 83217546 (+)
G194029 NA non-coding downstream 110901 83315702 ~ 83316083 (+)
G194224 NA non-coding downstream 145116 83349917 ~ 83357420 (+)
G194228 NA non-coding downstream 161230 83366031 ~ 83368104 (+)
G194241 NA non-coding downstream 190981 83395782 ~ 83397649 (+)
G193339 LOC106561425 other upstream 548932 82652633 ~ 82654430 (+)
LOC110497686 NA other upstream 781180 82417794 ~ 82426875 (+)
G193170 bhlh3 other upstream 799527 82401113 ~ 82403835 (+)
LOC110497665 LOC106561427 other upstream 814841 82366183 ~ 82393779 (+)
G194395 NA other downstream 354119 83558920 ~ 83559598 (+)
G195155 NA other downstream 1391609 84596410 ~ 84600324 (+)
LOC110498034 LOC106573178 other downstream 1805663 85010068 ~ 85054392 (+)
G197069 NA other downstream 2930815 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 3832710 87037511 ~ 87039236 (+)

Expression


Co-expression Network