XLOC_020709


Basic Information

Item Value
gene id XLOC_020709
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1994728 ~ 2014333 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042264
GggaaataaaggaaattagttatatatttcattatttaataaatagaaTAGGCTtgtccagtggttctcaaactttgtCATCAAGTAACACCTCAgaaaaaatggtctctccaagcACTACCATAAGtaacagtattgaaatacagtagcatagtaggcctaattaagcagctacagctctgtacagttcaaaaacaaggcagattaattcctattgttaagaatattcattatttttagccACTTTAAAcgttataaatagtttgaacaataacactGTATTGTGCTTacagataaaaaacaaacaaacaatatgtcaacattttaattaaaacgtGCTTTAAAAGTTGAATTAAAATGGTAGACTTTTAGGTGGTAGAAATTTTAGCTTAAATTAAACGTTAAAACGGCTGTCAAGAACAACACTGGGTGCTTGTTGCTTCAACACTGTTGATAAGCTGTGGTGGGCGTTTCCTATCAGTCTCACACTGaacacagtcgaccaatcacaacagactgggtcatcaaaCCAATCACTCCAGATTAGCATCACACAAAGGAAGGGTTTGGTAATAATGAACCACTGAACAAATCACATGAGAGTCATCGGGATCATTAGGTAACAAAACATACTATAAGACAAAGTGTTCTTTAAACTTGCATGAGCATcggcctgttgttggagaccccaaaaccaaaacagGAGCTTTGATAATGCATAATAAGGGCACTTTAACTGTGAAATCTGGTGCTTGTGAATATAAAGTTGAGTTTTCAGGAAGGTACATTCTCttgtgctttttaaatttgtgatTTGTCTCTCTAGTGTGGTTCAGCACATGTTTATTAAGGTTTGCTAATCGTGTGAAACTTTGCCCACACTGAGTAcacgtgtacggtttctctccagtgtgagtcctctcgtGCGTTTTCAGCAATCCTGATTGTCTGAAAGTTttgttgcagtgtgaacacacgtacggcttctctccagtgtggatcatctggTGTTTTTTTAAGCCTCCGTTTGtaatgaaactcttcccacagtcAAAGCAGacatactctctcacaccagtgtggatcttcagaTGGTCTTTTAGATGTGACTGCTGtgaaaaactcttcccacactctgAACATGAATAAAGCCTCTCGTTTGTGTGAACTCTAAGGTGGATCCTCAGCTCTGAGGgcctcaaaaatgttttgccgCACTGATCAcacttgtgttttttctctccaatGTGGATCTTCTTGTGTTCATTAAGGCTTGATGTTtgtgtgaaactcttcccacattgagtacatgtgtacggtttctctccggtgtgaatcatTTTGTGATGTTTAAGGGTACCAGACAGTCGGAATCTCttgttgcagtgtgaacacttgtacggtttctctccagtgtgaaccctCTGGTGCTGTCTCAAGTATTTAGCTCTAGTAAAAGCCTTCCCACACTCAAAGCAGAAAAACTCTTTCACAGCAGTGTGGAGCTTCTGATGTTTTCTTAAACTTGACTGCGttctaaaactctttccacactcagagcACGGATAAAGCTTCTCAATTGTATGAAGTCGAAGATGATTCTTCAGCCCTGAAgaccttaaaaatgttttgccgcattgatcacatgtgtgtgttttctccccAGTGTGGAGCAGCAGGTGTGTTTTGAGGTTTTCTGGACGATTGAATCtcatgtcgcagtgtgaacacttgtacggtttatctccagtgtgaatcctcttgtGGGTTCTCAGGTTTCCTGAACGGTTGAATCTCTTCTCGCAgagtgaacacttgtaaggtttctctccagtgtggatcctcatgtgaatcttcaGATTGTATTTAGAGCTTaatctctttccacactgagtgcaggtgaaacctTTAACAACTGTTTCTTCCATTGAAACACTTTGTTCAGTCTTATCTTCGGTTTTGGTTTCAGtcttgacatgatgtttctcctcatcttcactcagttCTTCGCTCTCCTCCTTCACAATCACATCTGAAAAGTGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042264 True 2043 lncRNA 0.40 2 1994728 2014333

Neighbor

gene id symbol gene type direction distance location
XLOC_020706 NA coding downstream 34023 1924305 ~ 1960705 (-)
XLOC_020705 NA coding downstream 176512 1799199 ~ 1818216 (-)
XLOC_020704 NA coding downstream 228734 1763914 ~ 1765994 (-)
XLOC_020703 NA coding downstream 234873 1756668 ~ 1759855 (-)
XLOC_020701 NA coding downstream 244988 1703690 ~ 1749740 (-)
XLOC_020710 NA coding upstream 35279 2049612 ~ 2302229 (-)
XLOC_020711 NA coding upstream 47352 2061685 ~ 2223987 (-)
XLOC_020712 NA coding upstream 64292 2078625 ~ 2087850 (-)
XLOC_020713 NA coding upstream 82447 2096780 ~ 2125152 (-)
XLOC_020714 NA coding upstream 110276 2124609 ~ 2173341 (-)

Expression


Co-expression Network