LOC110497849 (mterf2)


Basic Information

Item Value
gene id LOC110497849
gene name mterf2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83214229 ~ 83216248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574284.2
CACAGCCATACACCAAAGAAGCAAAGTTCAGTTTCATAACGAAACGTCACATCCGCTGAACGCTGCTAACAAACTCAGGTCAGACCTGCACGGTCTGTGACTGTGCACCCATGTTGCGATTAGTCACAACGTTGCTATGCCGCCACTGTCAGCAGATTCGACGTCTCCCCCCTCTCAGGGCCTTCTCAAACCCGGGAGGCACAGCAGAGAACCAGGTGACCGTGGAAGCCCTCTATGACCTTTCTGTGGACATCCAGAAGATCCGCCAGCTCAAGGGCTGGGTTCTGCATCAGAGCCCTGCCTATGTGAGTGAGACGGCCAGCCTGCTGCGGGACATGGGAGCAGAGGGGCCCATGATTGCCCGGGTCCTGGAGCTCTACCCCGAGGCGGTCCTTTGCAGCCcggagcagcagcaggcccagaGGGAGCTATGGAGGTCCAtctgccccagagagagagacctagtggGCATCATTGAGAAGTTTCCCGCCTCCTTCTTTACCTCCAGTCACCACGCCAACCAGAGGGCCAACATCGACTTTTTCCAGAGTTTACACCTAAACAAGCGCATTGTCACCAAGCTGATGGCCAGCGCCCCCCAGAGTTTCAGCTGCCCCGTGGGGCAGAACAAGGAGATGGTCTGCACCCTGCAGCAGGCCTATCTGGAGCTGGGGGGCGATGCAGCTAACATGAAGATCTGGCTGCAGAAGCTGCTCAGTCAGAACCCCTTTGTCCTCCTCAAGCCCCCGGAGGTGCTGAGGGACAACCTGCTGTTCCTTAGAGACCGGGGTTTCACCACCTCAGagctcctccgcctcctctccaAACTCAGGGGGTTTGTTGTCGAGCTCAACCCGGACAGCATGCGCCACACCCTGGCCTACTCGCAGGAGACCCTGGGCTGCTCAGAGGCTGAGCTCCGGGACATGGTCCTCAACTGCCCAGCCTTGCTTTACTACCCTGAGGTCATCCTGGCTGAACGCTTCGAGGGCCTGCTCAGAGCTGGAGTCACTATggctcagattacacagactccGACCGTTCTGGAGCTGACCACACAGATTGTAAGTTACCGGATCCAAACACTGCGGTCATATGGCTATGATGTACGGACAGGCAGCCTACAGGCCCTCAACGGCACTAAGAAGGACTTTGAGATGAGTTCTGGTAAACTGCAGCTGCGACGGGAAAGACCACTCTTCAACCCTGTTGCCCCGTTAAAGGGTGATGATTGACCTTGATTTCATGGTCTAAAATGCAGAACATTCTTATATCACCATAGGGAGAACTTGAATCAGGACTTTCTTTCAGCTGAATGGTATTACTGAGTTTAGGAGATGAGCTTGCCTTGAAAGTAGTCTTGCACAATTCCTCCCCAAAGGCATTTAGCCTGGGGATAAGATTACCTTGAAAGAGGCAACGCATCATTTTATCTGTGCAATATTTAAATACTATTAGGATAACAATAATATTTGGATATTATGATGCAATGTTGAATACGTGTTAAACAGATGTTTTGCTGTGTGTTGGGAATTGCCTGTGTATTGAAGCCAATATGTGTCAAAATAACCCCCTCAAAACATCCTAATAAAACAATTGTATTGATTA

Function

symbol description
mterf2 Predicted to enable nucleic acid binding activity. Predicted to be involved in termination of mitochondrial transcription. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in mitochondrial matrix. Orthologous to human MTERF2 (mitochondrial transcription termination factor 2).

NR:

description
transcription termination factor 2, mitochondrial-like

GO: NA

KEGG:

id description
K15031 MTERF; transcription termination factor, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574284.2 True 1608 mRNA 0.52 2 83214229 83216248

Neighbor

gene id symbol gene type direction distance location
LOC110502176 cry1 coding upstream 9428 83203362 ~ 83204801 (+)
LOC110497837 tmem263 coding upstream 90433 83119221 ~ 83124965 (+)
LOC110497829 LOC106561410 coding upstream 95629 83116088 ~ 83118600 (+)
si:dkey-103i16.6 LOC106561415 coding upstream 211360 82978247 ~ 83002869 (+)
LOC110497803 LOC106561416 coding upstream 240454 82964528 ~ 82973775 (+)
LOC110497874 btbd11 coding downstream 25021 83241269 ~ 83344652 (+)
LOC110502210 LOC106561405 coding downstream 161399 83377647 ~ 83395033 (+)
LOC110497881 LOC106561403 coding downstream 184711 83400959 ~ 83408768 (+)
LOC110497890 LOC106561402 coding downstream 193965 83408936 ~ 83422350 (+)
LOC110497903 LOC106561401 coding downstream 216970 83433218 ~ 83471783 (+)
G193930 NA non-coding upstream 26806 83187193 ~ 83187423 (+)
G193923 NA non-coding upstream 33880 83180018 ~ 83180349 (+)
G193916 NA non-coding upstream 46922 83167098 ~ 83167307 (+)
G193912 NA non-coding upstream 49361 83164540 ~ 83164868 (+)
G193905 NA non-coding upstream 59757 83154260 ~ 83154472 (+)
G193954 NA non-coding downstream 874 83217122 ~ 83217546 (+)
G194029 NA non-coding downstream 99454 83315702 ~ 83316083 (+)
G194224 NA non-coding downstream 133669 83349917 ~ 83357420 (+)
G194228 NA non-coding downstream 149783 83366031 ~ 83368104 (+)
G194241 NA non-coding downstream 179534 83395782 ~ 83397649 (+)
G193339 LOC106561425 other upstream 559799 82652633 ~ 82654430 (+)
LOC110497686 NA other upstream 792047 82417794 ~ 82426875 (+)
G193170 bhlh3 other upstream 810394 82401113 ~ 82403835 (+)
LOC110497665 LOC106561427 other upstream 825708 82366183 ~ 82393779 (+)
G194395 NA other downstream 342672 83558920 ~ 83559598 (+)
G195155 NA other downstream 1380162 84596410 ~ 84600324 (+)
LOC110498034 LOC106573178 other downstream 1794216 85010068 ~ 85054392 (+)
G197069 NA other downstream 2919368 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 3821263 87037511 ~ 87039236 (+)

Expression


Co-expression Network