LOC110497857 (cry1)


Basic Information

Item Value
gene id LOC110497857
gene name cry1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83224373 ~ 83239116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956986.1
CCTCGTACCTCTGTGGGTGGAGATGTTGGcgaataatatatttttttgtgtggttGACAATGCCGTCTGAAAACGAAGAACATTACAATTGCTTATTGGAATACATTCGAATGATATTGGAACACACATTTCTGATCAAAACTTTCTAGCAAGATTGCTATCGGCCTATTTTAGTTCACTCGCTACGACTCAACGCAATGATTCATTTTTCGAACTGCTATAGGAAAACAAGCAAGATAGCAGGTCGAACATCATTTTAAGTGTTATATTTACTTTCGTGTTGAAAATAATTATCAAATATTAACAATGTCTTACATTTAATGCGCTCTATACAAAGTTGATGCGATCGAGACCTGTCCGTACACTGTATTTATCAGAGGCCACCAAATCAATGCGGCAACAGAGAACTCATCACAATGGACAAATTGATGGAACAAGGTTAGATAACTTTAGTAGCTCTACATTATAAAACCAGCAAGGCGACAGAACCGAAACACATTTTGGGCAGGCGAGGGATATTGTTTTAATTCGTGAGCGTTTTGTGGTCAACGCTGCGGTATCACAGAAGACTCGTGTACATAACAAGAAGGGACAGCAAGTGAAATGGTCGGCAACACGATCCATTGGTTCAGGAAGGGCCTGCGGCTCCACGACAACCCCTCGCTGAAGGAGTCTATCCGGGGAGCTGACACCCTTCGATGTGTTTACATCCTAGACCCCTGGTTTGCAGGGTCCTCCAACGTGGGCATCAGCAGGTGGAGGTTCTTACTACAATGTCTAGAGGACCTAGACGCCAGCCTCCGCAAGCTCAACTCCCGTCTGTTTGTCATCCGGGGCCAGCCTACTGATGTCTTCCCTAGGCTGTTCCAGGAATGGCAGACCAGCCAGCTGTCTTATGAGTACGACTCTGAGCCCTTCGGCAAGGAACGTGACGCCGCCATCCAGAAGCTGGCCAGCGAGGCCGGTGTGGAGGTTACTGTCAAAGTCTCCCACACTCTCTATGACCTGGACaaGATCATCGAGCTAAACGGAGGCCAGTCCCCTCTCACCTACAAGCGTTTCCAGGCGCTCATCAGTCACATGGATGCCGTGGAATCACCCACTGAGATCATCACTGCTGAGGTCATGAGGAAGTGTGCCACGCCCATCAGTGATGACCATGACGACAAGTTTGCCGTGCCCTCCCTGGAGGAGCTTGGCTTTGAGACCGAAGGCCTGGCTACAGCAGTATGGccggggggagagacggaggcccTCACTCGCCTGGAGAGGCACCTGGAGAGAAAGGCATGGGTGGCCAACTTTGAGCGTCCCAGGATGAACGCCAACTCCCTGCTGGCCAGCCCCACAGGCCTCAGCCCCTACCTCCGCTTCGGCTGCCTCTCCTGTCGCCTCTTTTACTTCAAACTTACTGACCTCTACAGGAAGGTGAAGAAAAACAGCTCACCGCCCCTCTCGCTCTATGGCCAGCTGTTGTGGCGCGAGTTCTTCTACACCACAGCCACCAACAACCCCCGCTTCGACAAAATGGAGGGCAATCCGGTGTGTGTGCAGATCCCGTGGGACCGCAACCCGGAAGCGCTGGCCAAGTGGGCCGAGGGGAGGACAGGGTTCCCCTGGATTGACGCCATCATGACCCAGCTGAGACAGGAGGGCTGGATCCACCACCTGGCCAGACATGCTGTTGCCTGCTTTCTCACTAGAGGAGACCTGTGGATCAGCTGGGAGGAGGGCATGAAGGTATTTGAGGAGCTGCTCCTGGATGCAGACTGGAGTGTGAACGCAGGCAGCTGGATGTGGCTCTCGTGCAGCTCCTTCTTCCAGCAGTTTTTCCACTGCTACTGCCCTGTAGGCTTCGGCAGGAGGACGGACCCAAACGGAGACTACATACGGCGCTATCTGCCCATACTGAAGGCCTTCCCAGCCAAGTACATCTTCGACCCCTGGAACGCGCCCGAGAGCGTGCAGAAGGCAGCCAAGTGCGTGATCGGCATGCATTACCCCAAGCCCATGGTGCACCACACCGAGGTTAGCCGCCTCAACATCCAGAGGATGACGCAGATCTACCAACAGCTCTCCTGCTACCGCGGTCTGGGGCTGCTCGCGACAGTGCCTGCTAATCCTAACAATGGTGGAAATGGTGTGGGGACCTCCCCTGAAGAAATCCAGCATGAGGCAGTCGCTCAAGCAGgcAGAGGACATGCTGCCGTGAAGCGTAGCAGTGAGGACCTCACACCGGGGGGTAGCAACAAGGCCCAGAGGCAGACCAGCAACTAGTCCCTGATgtggaagggtagaggagagggggtacCAGCTACCCTGTTGATCTCCAGTAGGCTCCACCAGCACTTGAAGCGCTGCATCCTCCTCCCCTGACTCTTCAACTCTACAGGAGCACATCTACCTCAGTGGTGTGAGCAGCAGTAGGAAGAgatggagcagaggagaggaaaggaggctgCTAACATCCCACATTGAACTATGGGGAACATCAAATCACATGATCCCCAAAGAACTGATCGCAGCATCGCGGTCTGTGACATTCAACCTCTGTGGAGAATCGCAAACGCACAGTCGCACTGTTCCCAGTGTTACTAGATAGAGGTGATGGTGTCAGGACAGAAGCCCTTTCACGAGATGACTCCCGATAGTCTTTAACATGCACACCACCAAACTGTCTTTTTTGTGGTGCTGGGAATACAAGCCTGAGTTCCATTTATAATAAAAGATGATATACACACGTTTGTCCTCTTTCCCCAAAAAATATGTGGTCCCTTTGGGGATATATGTATGTATAGAACATGGAGGCACACGTTATATTTGCTGAAAGAACACTGGGGGGTGACTGTTTGATCCTGAGGGCATGTTATGTGCAGTCCTAGGCATGGAGAATGGCATCAGCCTCAAGCTGAGGATGACTGATGACCCAACTTGGAATCATGAGGTCAAATGGTCAGGTCAAACACTTATTATTCTATGGGGTATAATGCTGTCAGAAGTTCAGAAATATGAGTTTCCAATAAGCATTTTTAAGGCAGCATAACCTCTGTAAAAACCTTTTTAAGGGAATGATGTAAATGTTTCTGTATAAGCGTGTGAGTAATTCAACTCAAAATGTACAGTAAAAATGGTatattgcatgttattttggtttTATTATTTTTTCTGGTGAAGTTGTAAACcaattgttatttttgtataaagaCTGACTGTTCTGTATAGTGTTGTAATAAAAGGAGCAAAGTAACA
>XM_036956992.1
CCTCGTACCTCTGTGGGTGGAGATGTTGGcgaataatatatttttttgtgtggttGACAATGCCGTCTGAAAACGAAGAACATTACAATTGCTTATTGGAATACATTCGAATGATATTGGAACACACATTTCTGATCAAAACTTTCTAGCAAGATTGCTATCGGCCTATTTTAGTTCACTCGCTACGACTCAACGCAATGATTCATTTTTCGAACTGCTATAGGAAAACAAGCAAGATAGCAGGTCGAACATCATTTTAAGTGTTATATTTACTTTCGTGTTGAAAATAATTATCAAATATTAACAATGTCTTACATTTAATGCGCTCTATACAAAGTTGATGCGATCGAGACCTGTCCGTACACTGTATTTATCAGAGGCCACCAAATCAATGCGGCAACAGAGAACTCATCACAATGGACAAATTGATGGAACAAGGTTAGATAACTTTAGTAGCTCTACATTATAAAACCAGCAAGGCGACAGAACCGAAACACATTTTGGGCAGGCGAGGGATATTGTTTTAATTCGTGAGCGTTTTGTGGTCAACGCTGCGGTATCACAGAAGACTCGTGTACATAACAAGAAGGGACAGCAAGTGAAATGGTCGGCAACACGATCCATTGGTTCAGGAAGGGCCTGCGGCTCCACGACAACCCCTCGCTGAAGGAGTCTATCCGGGGAGCTGACACCCTTCGATGTGTTTACATCCTAGACCCCTGGTTTGCAGGGTCCTCCAACGTGGGCATCAGCAGGTGGAGGGCCGCCTCCAGAATGAATCACTTGGACGGGATTTGATTTCCATAAGGGGGTTCTTACTACAATGTCTAGAGGACCTAGACGCCAGCCTCCGCAAGCTCAACTCCCGTCTGTTTGTCATCCGGGGCCAGCCTACTGATGTCTTCCCTAGGCTGTTCCAGGAATGGCAGACCAGCCAGCTGTCTTATGAGTACGACTCTGAGCCCTTCGGCAAGGAACGTGACGCCGCCATCCAGAAGCTGGCCAGCGAGGCCGGTGTGGAGGTTACTGTCAAAGTCTCCCACACTCTCTATGACCTGGACaaGATCATCGAGCTAAACGGAGGCCAGTCCCCTCTCACCTACAAGCGTTTCCAGGCGCTCATCAGTCACATGGATGCCGTGGAATCACCCACTGAGATCATCACTGCTGAGGTCATGAGGAAGTGTGCCACGCCCATCAGTGATGACCATGACGACAAGTTTGCCGTGCCCTCCCTGGAGGAGCTTGGCTTTGAGACCGAAGGCCTGGCTACAGCAGTATGGccggggggagagacggaggcccTCACTCGCCTGGAGAGGCACCTGGAGAGAAAGGCATGGGTGGCCAACTTTGAGCGTCCCAGGATGAACGCCAACTCCCTGCTGGCCAGCCCCACAGGCCTCAGCCCCTACCTCCGCTTCGGCTGCCTCTCCTGTCGCCTCTTTTACTTCAAACTTACTGACCTCTACAGGAAGGTGAAGAAAAACAGCTCACCGCCCCTCTCGCTCTATGGCCAGCTGTTGTGGCGCGAGTTCTTCTACACCACAGCCACCAACAACCCCCGCTTCGACAAAATGGAGGGCAATCCGGTGTGTGTGCAGATCCCGTGGGACCGCAACCCGGAAGCGCTGGCCAAGTGGGCCGAGGGGAGGACAGGGTTCCCCTGGATTGACGCCATCATGACCCAGCTGAGACAGGAGGGCTGGATCCACCACCTGGCCAGACATGCTGTTGCCTGCTTTCTCACTAGAGGAGACCTGTGGATCAGCTGGGAGGAGGGCATGAAGGTATTTGAGGAGCTGCTCCTGGATGCAGACTGGAGTGTGAACGCAGGCAGCTGGATGTGGCTCTCGTGCAGCTCCTTCTTCCAGCAGTTTTTCCACTGCTACTGCCCTGTAGGCTTCGGCAGGAGGACGGACCCAAACGGAGACTACATACGGCGCTATCTGCCCATACTGAAGGCCTTCCCAGCCAAGTACATCTTCGACCCCTGGAACGCGCCCGAGAGCGTGCAGAAGGCAGCCAAGTGCGTGATCGGCATGCATTACCCCAAGCCCATGGTGCACCACACCGAGGTTAGCCGCCTCAACATCCAGAGGATGACGCAGATCTACCAACAGCTCTCCTGCTACCGCGGTCTGGGGCTGCTCGCGACAGTGCCTGCTAATCCTAACAATGGTGGAAATGGTGTGGGGACCTCCCCTGAAGAAATCCAGCATGAGGCAGTCGCTCAAGCAGgcAGAGGACATGCTGCCGTGAAGCGTAGCAGTGAGGACCTCACACCGGGGGGTAGCAACAAGGCCCAGAGGCAGACCAGCAACTAGTCCCTGATgtggaagggtagaggagagggggtacCAGCTACCCTGTTGATCTCCAGTAGGCTCCACCAGCACTTGAAGCGCTGCATCCTCCTCCCCTGACTCTTCAACTCTACAGGAGCACATCTACCTCAGTGGTGTGAGCAGCAGTAGGAAGAgatggagcagaggagaggaaaggaggctgCTAACATCCCACATTGAACTATGGGGAACATCAAATCACATGATCCCCAAAGAACTGATCGCAGCATCGCGGTCTGTGACATTCAACCTCTGTGGAGAATCGCAAACGCACAGTCGCACTGTTCCCAGTGTTACTAGATAGAGGTGATGGTGTCAGGACAGAAGCCCTTTCACGAGATGACTCCCGATAGTCTTTAACATGCACACCACCAAACTGTCTTTTTTGTGGTGCTGGGAATACAAGCCTGAGTTCCATTTATAATAAAAGATGATATACACACGTTTGTCCTCTTTCCCCAAAAAATATGTGGTCCCTTTGGGGATATATGTATGTATAGAACATGGAGGCACACGTTATATTTGCTGAAAGAACACTGGGGGGTGACTGTTTGATCCTGAGGGCATGTTATGTGCAGTCCTAGGCATGGAGAATGGCATCAGCCTCAAGCTGAGGATGACTGATGACCCAACTTGGAATCATGAGGTCAAATGGTCAGGTCAAACACTTATTATTCTATGGGGTATAATGCTGTCAGAAGTTCAGAAATATGAGTTTCCAATAAGCATTTTTAAGGCAGCATAACCTCTGTAAAAACCTTTTTAAGGGAATGATGTAAATGTTTCTGTATAAGCGTGTGAGTAATTCAACTCAAAATGTACAGTAAAAATGGTatattgcatgttattttggtttTATTATTTTTTCTGGTGAAGTTGTAAACcaattgttatttttgtataaagaCTGACTGTTCTGTATAGTGTTGTAATAAAAGGAGCAAAGTAACA

Function

symbol description
cry1 Enables double-stranded DNA binding activity; nuclear receptor binding activity; and phosphatase binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. Implicated in advanced sleep phase syndrome.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0009649 entrainment of circadian clock biological_process
GO:0042542 response to hydrogen peroxide biological_process
GO:0009416 response to light stimulus biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003913 DNA photolyase activity molecular_function
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956986.1 False 3249 mRNA 0.50 9 83224373 83239116
XM_036956992.1 True 3299 mRNA 0.50 10 83224373 83239116

Neighbor

gene id symbol gene type direction distance location
LOC110502187 NA coding downstream 401 83219964 ~ 83223972 (-)
LOC110497842 LOC106561444 coding downstream 55338 83155680 ~ 83169035 (-)
LOC118936835 NA coding downstream 103253 83114353 ~ 83121120 (-)
LOC110497820 polr3b coding downstream 113159 83069019 ~ 83111214 (-)
LOC110502165 LOC106561413 coding downstream 166403 83027054 ~ 83057970 (-)
LOC110497937 LOC106561440 coding upstream 496595 83735711 ~ 83777336 (-)
LOC118944150 NA coding upstream 510501 83749617 ~ 83749671 (-)
LOC110497945 LOC106561398 coding upstream 540256 83779372 ~ 83791825 (-)
LOC118942895 NA coding upstream 559388 83798504 ~ 83800597 (-)
LOC110497954 LOC106561396 coding upstream 570089 83809205 ~ 83812698 (-)
G194119 NA non-coding downstream 37496 83186494 ~ 83186877 (-)
G194112 NA non-coding downstream 52024 83171814 ~ 83172349 (-)
G194088 NA non-coding downstream 86187 83137925 ~ 83138186 (-)
G194079 NA non-coding downstream 96149 83127992 ~ 83128224 (-)
G194225 NA non-coding upstream 114748 83353864 ~ 83358812 (-)
G194226 NA non-coding upstream 120777 83359893 ~ 83360101 (-)
G194227 NA non-coding upstream 124871 83363987 ~ 83364205 (-)
G194304 LOC106561403 non-coding upstream 162695 83401811 ~ 83402200 (-)
G194301 NA non-coding upstream 169812 83408928 ~ 83410211 (-)
G193755 NA other downstream 216397 83005830 ~ 83007976 (-)
G193745 NA other downstream 311869 82901640 ~ 82912504 (-)
cart2 LOC105018397 other downstream 2030528 81192528 ~ 81194099 (-)
G191669 LOC100380853 other downstream 2302958 80915679 ~ 80921415 (-)
G194491 NA other upstream 376450 83615566 ~ 83616034 (-)
G195427 NA other upstream 642424 83881540 ~ 83904451 (-)
G195486 LOC106573171 other upstream 738849 83977965 ~ 83982167 (-)
LOC110498022 LOC106561385 other upstream 1370618 84596433 ~ 84910878 (-)
G197498 slc25a18 other upstream 2597183 85831239 ~ 85843493 (-)

Expression


Co-expression Network