LOC110497881 (LOC106561403)


Basic Information

Item Value
gene id LOC110497881
gene name LOC106561403
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83400959 ~ 83408768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574333.2
CCGGTAGGACCAATAATAGAGTAGCAAACCATTTCTGACAAACATCCGTAGTGCAGACCTGTGATAGCGTCGTATCTTGGAGGTGTGAATGAGGTCTCTGCTGAGTTTAAACAGACCTACCGGCTTTAGTTGGATGACTTCTTTAAAACTTCGTCTGGCACGGTCAAATTTTCTTCGCTCTGGTATTGTCGTCGTGGTTAGATACTTCTCCGCTGTTGTTATGGACGACATGGGTCTGGCGGTCAGTCGTTCACCGCTCGAGCGCCTCGAATTTGACAATGTCGCACTCAAGAAACTTCCACTGGATACATCAGAAGAACCTGGTCCGCGAAGGGTGACAGGAGCCTGTTTCTCTCGAGTAAAACCACAGCCAGTGCTCAAGCCCAGATTTGTGGCCGTCTCGAATGATGCTTTAGCTTTGCTTGGGCTGAACGCCATGGAGGTTCTGAACGACCCACTGGGTCCAGAGTACCTGAGCGGCTCCAAAGTAATGCCAGGGTCCGAGCCTGCAGCGCACTGCTACTGCGGTCACCAGTTCGGGTCATTCGCCGGACAGTTGGGGGACGGGGCGGCCTGCTATCTGGGTGAACTAAAAGCTCCAGCAGACCAGTGCTCCGAGCTGCTGCGAGAGAACCCCAGTGGCCGGTGGGAGATTCAGGTCAAAGGAGCTGGACTGACGCCCTACTCCAGACAAGCGGATGGGCGTAAGGTGCTGCGATCCAGCATCAGGGAGTTTCTGTGCAGCGAAGCGGTGTTTGCTCTGGGCGTGCCCACCACGAGGGCGGGGTCGCTGGTGACCTCTGACAGCAAGGTGGTACGGGATGTGTATTACAGTGGGAACCCCCGCAAAGAGAGGTGCTCTGTGGTCCTCCGCATCGCACCCACCTTCATCAGGTTTGGGTCATTTGAGATCTTCAAGGCGACTGATGAGAACACAGGCCGCCAGGGCCCCAGCTACGGCCATGATGCGATCAGAGGTCAGATGATGGATTATGTCATAGAGACCTTCTACCCAGAGATCCAGCAGAACCACACTGACAGAGTGGAGAGGAATGTGGCATTTTTCAGAGAGGTGATGTTACGTACAGCTCGGCTGGTGGCCCAGTGGCAGTGTGTGGGTTTCTGCCATGGAGTCCTCAACACAGACAACATGAGCATTCTGGGACTCACAATAGACTATGGCCCCTATGGCTTCATGGACAGGTTTGATCCTGACTTCATCTGCAATGCCTCAGACAACTCAGGCCGCTACTCCTATCAGGCCCAACCGGCTATCTGCCGCTGGAACCTGGCTCGCCTGGCCGAAGCCCTGGACCCAGAGCTGCCCCCAGGCCGGGCAGAGGCTGTTCTGGACGAGTACCAGCCCCTCTACAACACCTTCTACCTGGGTAACATGAGGAAGAAGCTGGGCCTGCTGAGGAGGGAAGAACCGGAGGACGAGATGCTCATCACTGAGCTGCTGCAGACCATGCATAACacagGAGCAGACTTCACCAACACATTCCGCTGTCTGAGCCAGATCCCCTGCCCCACTGAGGGAGATggggaagcagaggaaggagtcATCAAAATGGCCAAAGACCTCCTCCTGGAGCAGTGTGCCTCTCTGGAGGAGCTCAAGGCTGCCAACAAGCCCAGCATGGACCCACGTGAGTTGGCCATGCTGATGCAGTTGGCCCAGAGCAACCAGTCCCTGTTCCAGATGATATCAGACCGGAGGACGGTGGCCATGCAGCTGGAGAAGCTGGGCAGGCTGAAGGAGCTGCTTGAGGCTGATGAGGTAGAGGTCAAGGCCAAGCACAGGGAGGACTGGGCCACCTGGATCACCTCATATAGGGAGCGTCTGGCTAGGGAGGTCGAGGGCCAGAGTGATGTCCAGGCACTgcaggaggagagagtgaaggtgATGGATGGCACCAACCCACGATATGTCCTCAGGAACTACATTGCCCAGAATGCAATAGAGGCAGCCGAGAACGGAGACTTCACTGAGGTCCAGCGGGTGTTGAAGGTTCTGGAAAAGCCTTTCTCTACCCAGCTGGGTCTGGAGCAGCCGAGCTGGCTGGGCCAGAGGGGGGCAGAGGGGCAGaggaatgaggaggaggaggaggcacagCAGGGGGCAGAAGCAGCATCATCCCGAATGCGTGTTCCCTATGACAGCAAGCCCCCGGTTTGGGCCAATGAAATCTGTGTTACCTGATCTTCGTAGTCCCTTCCCTGACAGTGAACCCACCTAAAGTTAGAAGCGAGTCATTCAGTATTTTCTTCACCTCTGTTTACCTTTACCTCTCCACTCTCTCGCTTTACTTGGGTGGGTAATGTCAAGGAAAGTACATTTATGAGTTAAGATGCTACTATGTCAATCAGTCAGTCTGTAGAGGAGAGGATGTGTTAAGAGTTTTAGGAAATTTCAGAGTACAACCCCAGAAATTTGAAATCACGCCTTTGATCCAAGTGATATTTACATTTATGGAAATATCACATGTTTAGTAGATCTATACTCTTAATACAGATACAAATCCCGCTCTGTAGATCTGCGTAGCCTATTGACTGTCTGGTTATGAATGACGGCCCAGACGTCCAGTCCCACAGTGACCCGTCTGAGTCTGAGAGACTAGGAGTATCACCTCAATATATCAAATATCATGTGTCTATGCGTGTGAAAAGGAATGATTGTAGATGAAGATTTACATATCCTCTGAATCGTACTGAATGGTTCacatatgtgtatgtgactgacTGAGCCGCAAATGACTTAGCGCACAAGTATAACATAATTGGCAACgtttacactaccggtcaaacgttttagaacacctactcattctcaTTTGCATATTAAATcataaaatatatgtatatttccCATGGTTTTCTTGGTTGACAATAGCAGTTTTGAAGCTTCCTGGAAAATGTAGGCAATACATAGAATGTTATCATGACCAACAACAATGTTGTGGTGTTTTATTTGTGCAATGAAGCACTAAGTGGTCAGTATTATGGCTGCTGTGACATATATACACTACTGgtaaaacgttttagaacacc

Function

NR:

description
selenoprotein O-like

GO: NA

KEGG:

id description
K08997 SELENOO, selO; serine/tyrosine/threonine adenylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574333.2 True 3051 mRNA 0.51 9 83400959 83408768

Neighbor

gene id symbol gene type direction distance location
LOC110502210 LOC106561405 coding upstream 5926 83377647 ~ 83395033 (+)
LOC110497874 btbd11 coding upstream 56307 83241269 ~ 83344652 (+)
LOC110497849 mterf2 coding upstream 184711 83214229 ~ 83216248 (+)
LOC110502176 cry1 coding upstream 196158 83203362 ~ 83204801 (+)
LOC110497837 tmem263 coding upstream 277163 83119221 ~ 83124965 (+)
LOC110497890 LOC106561402 coding downstream 1445 83408936 ~ 83422350 (+)
LOC110497903 LOC106561401 coding downstream 24450 83433218 ~ 83471783 (+)
LOC110502224 LOC106561400 coding downstream 89381 83498149 ~ 83611296 (+)
LOC110497928 LOC106561399 coding downstream 253183 83661951 ~ 83682409 (+)
LOC110497962 tmem5 coding downstream 405432 83814200 ~ 83818689 (+)
G194241 NA non-coding upstream 3310 83395782 ~ 83397649 (+)
G194228 NA non-coding upstream 32855 83366031 ~ 83368104 (+)
G194224 NA non-coding upstream 43539 83349917 ~ 83357420 (+)
G194029 NA non-coding upstream 84876 83315702 ~ 83316083 (+)
G193954 NA non-coding upstream 183413 83217122 ~ 83217546 (+)
G194263 NA non-coding downstream 20900 83429668 ~ 83429868 (+)
G194266 NA non-coding downstream 23138 83431906 ~ 83432137 (+)
G194267 NA non-coding downstream 23429 83432197 ~ 83432434 (+)
G194366 NA non-coding downstream 89673 83498441 ~ 83498677 (+)
G193339 LOC106561425 other upstream 746529 82652633 ~ 82654430 (+)
LOC110497686 NA other upstream 978777 82417794 ~ 82426875 (+)
G193170 bhlh3 other upstream 997124 82401113 ~ 82403835 (+)
LOC110497665 LOC106561427 other upstream 1012438 82366183 ~ 82393779 (+)
G194395 NA other downstream 150152 83558920 ~ 83559598 (+)
G195155 NA other downstream 1187642 84596410 ~ 84600324 (+)
LOC110498034 LOC106573178 other downstream 1601696 85010068 ~ 85054392 (+)
G197069 NA other downstream 2726848 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 3628743 87037511 ~ 87039236 (+)

Expression


Co-expression Network