LOC110502224 (LOC106561400)


Basic Information

Item Value
gene id LOC110502224
gene name LOC106561400
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83498149 ~ 83611296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934304.1
ATGAACCTGAGCCCAGCCAAGTTTCAGGCAGCCTCATTTGAGCTGGTTTACCCGGAGACAGATATCACCCCAATCAACGTGGGCAAGGAGAGTGGACATATCGTGGTAGCCAGGCGCCTGGACAGGGAGACTGAACCGTTCGTGGAATTTACTGTCAAAATACAAGATCAACAAGGGCCTGACTGGTACCTGACCAAGGTGAAGCTGATGGTGACAGATGTCAACGACAATGTCCCCGAGTGGGCTATGGAGCCATACCCCTACCTGGCCGTGGTGTCCTCCGAGGCCCCCCCTGGGGTGCTGGTTTACCTGCTCCATGCCCGCGATGGGGATGAGGGCAGCAATGGCGAGGTGGAGTACTTTCTGGCCGATGGTGGTGATGGCTGCTTTGCAGTGGACAAGAATAGTGGTCACGTCCTGACCACGGGTCTCCCCttgcagagagacagggagtatCTGCTGAGTGTGGTGGCCTTTGACAGGCTGGGAAGCCGCAGTGCTCCGGCTATGGTGTCGGTCATAGCAGGACCCAGAGCACCACAGTTCACCAACGCGTCCTACGTTATCTCCATACCAGAGAACACCCCAGAGGGACAGTCCTTCCTGGTGGTGTTGGCCATCTCCTTCCAGAAGCAGCCAATCTGCTACAGCCTGCTGATCAACCCCAGCAGCCTGTTCAGCATGCAGCAGGAGACGGGGGAGATCAGCCTGACCCGCACGCTGGACTATGAGAATGACCAGAGACGATACCTCCTCATGGTCAGGGCCAGTGAGGGTCCAGGGGGCCTCAGCAGCGCCATCGAAGTCCAGGTGGTGATAACGGATGAAAACGACTGTGTCCCAGAATTTCTCCAGTCCATTTACAGCGTTGATGGAGTCTCTGAGACAGTCACCACAGCAACCTCTCTCCTGCAAGACTTCTGTACCTCTGCTACAGTGTTAGCCAGTGACTGTGACTCTGGGTTGAATGCGGAGCTCACCTACTACACTCTAAGCCCAGACTTCAGCATTTCTCCCCACGGAACCATCTTCCCTGCGGGCCGTCTGGACTACGAGAGGCCCAACCACCTGTATGAGTTTGTGGTGATGGCTGTGGATAACGGGGAGGAGCCTCACTCGGGCACCGCCACCATCCGCATCCGCATGGCCAACATCAACGACCAGGCCCCAGAGTTCTCCCAGACTGTCTATCGGACCTTTGTCTCTGAGGATGCAGGCCCCAACACTCTCGTTGCCACGGTACTGGCTAAGGACCCGGATGGTGATGGAATAGTGTACTCAATTACAGCTGGCAACGAGGAGGGCAACTTTGTCATCGACAGCCAGAAAGgGTTGATCCGTCTGCGCTTCACCCCCGCTCCCAAGCTCCAGGGCCTGGAGTACGTCCTCAATGTAACAGCTACAGACGACAACGCCTCTGGGGGGCCACACCCACTCTCTGCCACCGCCTGGGTCATAGTGGGTGTTGAtgatgtcaacaacaacaaacccgTCTTTGAGAAGtgTCAGCAGTACAGGGAGCAGGCGTCCGTGTTGGAGAACCAGCTCACAGGAACCTTCGTATTACAAGTGCACGCGGTGGATGCAGACGAGGGGGCCAATGGGAAGGTCAAGTACGGCCTGATGCACAGAGACAGCGCCATACCTGCCTTCAGAGTCCACCATGACACAGGTGTGATCGTGACAGCGCGGCGGTTCGACCGGGAGCGTCAGAGAGAGTACTCCATCACGGTGACGGCTACAGACTGGGCTGAGGAGCCCCTTATAGGGATCTGTCAGCTCAACGTCATCATCCTGGACCAGAATGACAACAGCCCCAAGTTTGAGAACCTACGCTACGAGTatTTTCTGAGAGAGGACACAATGATCGGCACCAGTTTCCTGCGTGTGGCGGCACATGACGACGACTTTGGTACCAACGCTGCCGTCACCTACTCCATATCCCAGGAGCAGCCTGAGTACCTGAGGGTGAACCCTGTTACCGGCTGGGTGTACGTCAACCAGCCCATATCACAGAGGTCCTCCATTACCCGGGAGATTATGGCCACGGACGGGGGGAACCGCAGCACATCTGTAGAGATGTCTGTGACCATTACCAATGTGAAGAACCAGCCCCCGCAGTGGGAAAAGGACAGCTACAGCGTGGTCATCCCAGAGAACACTGCCAGGGATACTCCCATTGTGACGATCAAAGCAACCTCGTTGCTAGGCGACCCCAGGGTGACCTATAACCTGGAGGAGGGTGTGGTCCCGGAGACTAACATGCCCGTGCGCTTCTACCTGTCGCCCAATCGCGAGGATGGCTCAGCCTCCATCCTGGTTTCGGAGCCGTTGGACTACGAGACCACGCCCAGTTTCTCCCTGAGGGTGCGGGCTCAGAACTTAGCAGCGGTACCACTGGCTGCATTCACCACCATCTATGTCAATGTCACAGATGTGAACGACAATGTTCCATTCTTCACCTCCTCCATCTATGAGGCTTCAGTGACGGAGGGAGCCAAGGTGGGGACCATGGTCCTCCAGGTGTCTGCTCAAGACAAGGACCTGGCTTTCAATGGACAGATCACTTACTCCCTCTTGAGTGACAGTAGTGGGGACCACCGTCTATTTCGTGTAGATCCAGAGCTGGGCTCCATTTATACAGAGGCTGTGTTTGACCGCGAGGCGCAGGGATCCTACCTACTGGAGGTTCAGTCTGAAGACGGCATGGAGTCAGCACGGCCTGGGAGGAAcaaacagcccaactctgACACAGCATATGTGCGGGTTTTCATCAGCGACGTGAACGATAACAAACCCGTCTTTGCTCAGCGCCTCTATGAAGTTGGGGTTGACGAGGATGCAGATATCGGCCTGGCTGTTGTCACTGTCAGTGCTAATGACGAAGATGAAGGTGCCAATGCCAAGTTGCGCTACCAGATAACTTCGGGCAACACAAGGGGGGTGTTTGACATGGAGCCTGAGGTGGGAACCATCTTTGTCGCCCAGCCTCTGGACTACGAGCAGCAGAAGAGGTACAAGCTGCTGGTGCTGGCATCGGACGGAAAGTGGGAGGACTACGCCGCCGTGGTGGTCAACGTGGTCAACAAGAATGATGAGGCGCCCGTCTTCTCCATGAATGAGTACTATGGCTCAGTGACAGAGGAGCTAGATGGCTCACCGGTCTTTGTGCTCCAGGTGACGGCCACGGACCCAGACAAGGATGCAGACCAGGACGCCGTCCGCTACTCTCTCCATGGTCAGGGGGCGGACTCTCAGTTTATGGTTAATGAGAACACGGGGGAGATGTACGCCCAGAAGACGCTGGACCGCGAGGAGCGGGCTGTGTGGCGCTTCGTGGTCCTGGCCACGGACGAGAAAGGGGAGGGGCTCACCGGCTTCACTGACGTCATCATCAACGTGTGGGACATCAATGACAACGAGCCCGCTTTCACCTGCGCACCCGATGGCTGCCACGGCAACGTAGCCGAGAACTCACCCCCAGGAACTTTTGTCATGGAGATGATGGCGGCAGACCTTGACGACACGGCAGTGGGTCAGAACGCCATCCTCACCTATCGTATCATCAAGAACGCCCGTGACGCAGATTCTGAGGAACTATTTACAATCGACACTAGTACGGGCACCATCTCCGTGGTGACCGGCGGGCTGGACAGGGAGGTGGCAGAGCGGCACCAGCTGGTGGTCGAAGCCAGGGATGGAGGGGACATGGTGGGTACAGCTACCGCCACTATCATCATCATGGACCTGAACGACCATACCCCCCGGTTCAAAGATGAGTGGTGTGGGGCTCGTGTGTCTGAGAGCAGCCCTCCAGACTCAACCGTGCTGGAGCTGGAAGCTGTGGACCCAGACTCTGGCCCTCACGGCCTGCTGGGTTTCAGTGTGGTGGCGGGGGACCAGTGGGAGAGGTTCTACATGGTGAGCCACAGAGCAGAGCAGTCTGGGAGTCTGAAGCTGAGGAAGGGGCTGGACTATGAGAGGCCCGGAGAGCAGCGCTTCAACCTCACAATCCAGGTGGAGGACTCTGACTTCTCCAGCCTCATCCACTGCATCATCCAGGTGCTGGATGAGAACGACCACATCCCTGAGTTCACCACCACCTTCTACCCCCTCGCTCCTCTAGTGGAGGATGTTGCCGTGGGAACCAGCATCACCCAGGTGATGGCCAATGACTCAGACTCTGACCTGAATGGGGAAATAGTCTACAGCATCTCCCCGGAGTCAGACCCGTACGGTAATTTTATAGTGGACCGAGACGGCATTGTGACCGTGACCCGCCCgctggacagagagacaatgCCCGAGTACCAGCTGGTTGTCATGGCGACAGACCGCGGAAGTCTGGCGTTGACGGGGAGCGCCACGGTCCAGCTGAGCCTGCTTGATGTTAATGACAATGGGCCAGAGCTGGAGGTGGCCTATACCCCTGTCCTCTGGGAGAACAGCCCTGCTCCACAGCTGGTGTGGCTCAACCAGACCTCCACGCTGCTCCACGTTATCGACAGGGACTCCCCAGAGAATGGGCCTCCCTTCTCCCTCGCCCTTCCCCGTCTTTACGCCCCCGACTTCCACCTGCAGGACCATGGCAATGGCACGGCAACGCTCACAGCGCTGCGCCGCTTCGACCGTGAGCGCCAGAGGGAGTTCCTCCTGCCCGTGGTCATGACGGACAGCGGCCGTCCGCCAATGACGGTCACCAACACGCTCACCATCACCGTGGGCGACCAGAATGACAACGCCCaccaggagggagagaaggagatttaCTTTCACAGCCGGAGGGGAAGGATGCAGACTACTTCGCTGGGCAAGGTCTATGCCCCTGATCAAGATGATTGGGACAACAAGACCTACACCTTAGACGCAGGAGGAATGAGGTATTTCACTCTAAACAGGAGTTCAGGCCACCTGGCCATCAGACAGAACACCCTAGCAGGGAGCTACTATCTCAGAGTGGGAGTGTCGGACGGGGTGTGGCCAGACGTGGTGTCTGGGGTCACAGTTCACGTCCGGGAGCTAGAAGACATGGCCATCCACTCGTCAGCCTCCCTGCGTCTGACCGGCATCACTGCCAGAGAGTTTATTGAGTCCCGGGTGGACGAGAGGAGTCGACAGGATATGTTCAGGAGCTTCCTGTCTGAACACCTGTCCATCAGATCAGGCACAATCAACGTCTTCAGCCTGACAGACGTTAGACCGAAGACGCTGGACGTGCGCTTCTCTGTGCACAGCGATGGCTACCTGCGTCCAGAGAAACTACACGGATACCTGGCGGCGCATATAAAGAAGCTGCAGTCTCTGCTGCGGGTGAACGTGTCCCAGGTAGAGGTGGATGAGTGTGTGTACACAGACTGCAGGCCGGGTGGCGGCTGCTCCACACAGCTCAGCGTCAGTGACACACCCACCCTGGTCGATGCCGGGAACATAGCACTGGTGTCTATGACGATGATGTCCTCTGCCCGGTGTGGCTGCTCTGCCAGGGACCGGGTCCATCAGGCTTGTTCCTCCTACCGCACAAACCCCTGCTTCAATGGAGGCACCTGCATGGATACCCTCAGTGGGTACAGGTGCCAGTGCCCACCGCAGCATGAGGGTCCTGAATGCCAGCAGACGAGGCGAAGTTTCCTTGGCAACGGCTATGCCTGGTTTCCTCCCATAAGGCCGTGCTTTGATAGCCATCTTTCCCTGGAGTTCATCACAGAGGCTGAGGACGGCCTGCTACTCTACAGCGGGCCCCTGGCCACCCTGCAGCCTGGAGACCCAGAAGACTACATGGCTATAGAGCTGATTGGTGGAACACCCAGTCTGAAGATCAACCACGGGTCTGGGACCCTGGTCCTGCAGTTGCAGGGCAACATGGTTGTGTCTGACAGACGCTGGCACCGACTGGATGTTAGAAGCAACAGTAAAGATGTGCATTTCACCCTGGACCGCTGCTCCAGTGCTATCGTTATGGAAACTGAGGGTGTGGACAGCTGGGCCATGACTGAGGACCGCTCCTCCTGTGAGGTCAGAGGAGTCACACCTAATAGGGACAGGTACCTGAATGTGAGTCAGGTGTTGCAGCTAGGTGGGGTCAACGAGAACATGTCCTATGAGTATCCCCAGCTACAGCAAAAGCACTTCAATGGTTGTCTGCGCAACCTGGTTGTGGACAGTAAGCTCTATGACCTTGGCTCTCCCTCGGCATCCTCCAGCACTGCCCCAGGCTGCTCTCTGACTGATGGGAACTGTATGAACATGGGTGTACCAGTCTGTGGTGCCAGGGGGCACTGTAATGGGCAGTGGGACTCCTTCAGCTGCCAGTGTGGGCCCGGGTACACAGGGATCCACTGTGAAGATGAAGTTCCAGAGTTTTCCTTCAATGGGAGGAGCCATGTCCAGTACCAGGTGGGCTGGTCACTCCCCGCTCGTCACACCAGCTTTCAGCTCCAGGTGCGAACCCACACCCCCAGCGGTGtcctcctcagcctcctctcGCAGGAGCAGAATGAATACTTACGTCTGGAGATGTTTCAGGGGCTACTGGCTGTCTTTTACAACCTGGGTGACAGACCCTACAACCTCACGCTGCCCTTCCATCGCCTTGACAATGGAGAATGGCATGAGGTGGAGCTTGATCGTCATGGCAAAGAGTTCACCCTTCAATTGGACGGTGGCGGTGGAAGGCGGGAGGTTACGGCCGCTCCTGGGCGGAGTCAGGAGATAGTCATCGACCAATCAGTGGTGATGCTGGGAAACTCCTTCCCCTCAGGACACAACCGCAGCTTCCTAGGATGTCTGCGAGACCTAAGGCTGAACGGGCGGCCCATGCCCATTGCCAAGGAGCCCTCTGTGGGGTCTGAGGGGCTCCAGGTGGTCACTTCTCAAGGGGTCTCCCCAGGCTGCCCCTCAGATGCCTGCAGGAAACACCAGTGCTCTCCCCCCTTCATCTGCATGGATCTTTGGAGGAAACACGAGTGCAGGTGCCCCCCTGGTCACATGATGAAGAAGAATGCCTCGGGCAAGGTCTGCGTCTACACGCTGTGCGCCAGCAGGCCCTGTCGCCATGGCACCTGTGTGGCCCACTCCCCCTCCAAGTACTCGTGTCACTGCTCGGAGGGCTATCGCGGGCTCCACTGTGAGGTCTCTCTGGCACTGTACCACAACGACGACAGCAACACGCTGAGCCTCAGCTCTGCGTTTGCCATCAGTATCTGTGTCCTGGCCTTCCTAGTGCTGATGCTGGGCCTGTTCCTCTACTCCTGCTGGAGGAGACACAAGGGCCTGAAGGAGAGCGTCTACCACGTATCAGCACACCACGGAGAATGGGAGGACATCCGAGAGAACGTGCTCAACTATGATGAGGAGGGCGGAGGGGAGCAGGACCAGaatGTCTTCAACATGGTGGAGTTACAGAGGTCTctgcagcccagcccagcccagtcacTGAGATACAGCTACCCACAATGCATTATCTCCTACCCTCAGACGACCAAGCCACCGGACACCAAGAATGGGACCAAACCAAAAGGATCAAACGAACCCAGAATCGGCAGCACAGCGATCGCCCTGCGTCTGGCCCACCCTCCGTCCGGGTCTgctaccctcccctctcccctcgccATGCGGCAATCCCATAAGTCCCTGTCCTTCTCCAGTCAGGACCTGGCCCGCTACCTGTGTGAGATCATAAGGGACACGGACCATCCCCTGGGGGACAACCCTGGCTTCATGACCTCACAGCGTCGCCTGTCCAATAGGGGGCAGCATGGTGGTCTAGTTGTGCGCTCACTTAGCTCCCTCAGTGctggaggtcaggggtcagaggttagggttcagggaagtcaggagagCCTGGAGCGTCAGAGAGCCCAGAGCCCACGGCTGGACAGGCTCAAAGCCCTGCGAGCTGTAGTCAGTGAGCTCAGAGTGGACGCTGCTGTAGACTGCTGCCACCAAGAgcacagagggacagaaggacaAAGCGAAGGAGAGGGAGACCAGGGGGCAGGCCAACTGTGAGAAGAGAGCATGAGACTGGAGTTGTGCAATTTTTAAATCGATTGATCCAAAGATggtgttggggggaaaaaaaaactAATGAGAACAAATAGTTAAGAAATGTACATTTCTGATTTGTAATCCATTTGTAAAGTATTCTATGGGTGGATTGTGGCAAAAATGTGATGCATCTTTAATGTGACAGATTTGACAACAAATCTGGAAAAGCAGCACCATTTTCTTGGCAATGCCCTGTCTATACCCCACAAAAATATATGTAAAAGAAGGCTAAATGAATCTAGATTTTAAATAGGgttccttttttgttgttgataattATCGTAATATCATTTctgtgagaaaaaaatattttgtttgttttgttttgatttAACGCCTTTTAAATAAATGAATCTTAGAAATGTATGTCTGTGATAATAAGACATTGCTATCTTTGAGGTTCATTTTGTGATGCATTTTTTGTTTCAGATTTTTACCAACCAATTTTCATTATCAAAAGCTATGCTTGGTAAATGCATGCCTCTATTCCTCAGCAACTTAAGTACATCACTGCACTACCTCTTATTTACTGATTCATAATAGCGCCTAAATATTATATGCAATTAAAACCCACTTGTCTAGACTGGAAAGTGTGTGGGTTGAGAACCAGGACCAGTATCTACCAATATCCTGACTATGACTACTTCACTCCACTGAGTATTGTCTCTCAAGCTCCTCATCAATCATGTGCACACAGGTGCTGTTGACCTGGTTAAAACTCTGAAATTCAGTtgaaaaagttgtaaaaaaatgcTACAAAAAGGTAGCATAGCATCCAACTCAAGATGGACAATGTAAGAAACAAGAAAACACACATTCACCACACAACGTTGCTCCAAAGGTTttaaaatgactcaaatgtcCAACGTGTGACTCTAGCAGTTAGCAACAGGCTACAGTACATTtaaatatgatgatgatgaagatggtaATTAATGATGATGATCAGTTCATTCCTGCTCCAGAGTGAATCATTCATATCCTGTACCCAAACCTTGCTGACCCTTTTGGAGTTCTCTGACATGTACTTAAAGAGTATGTAGCTCCCGCAGACTGACCTCTTCAATACTTAATTGCACTGCGTGACTTCAGTTAAATGGCAGTGAAATTGGAGCTTTCATAGGGAAAGGAAGCAGTGCTGCTtttatagaaatataattactagaaggTACCAAGCCCTTACATGTGCCGTCTAGACATGTAACACGTGCTTATCCATGTCAGTGATGTCACACATACTGGCCTTGTGTTGAAACATGTATAGACCCATAAGTCTTGGA

Function

NR:

description
PREDICTED: neural-cadherin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934304.1 True 9326 mRNA 0.55 33 83498149 83611296

Neighbor

gene id symbol gene type direction distance location
LOC110497903 LOC106561401 coding upstream 26366 83433218 ~ 83471783 (+)
LOC110497890 LOC106561402 coding upstream 75799 83408936 ~ 83422350 (+)
LOC110497881 LOC106561403 coding upstream 89381 83400959 ~ 83408768 (+)
LOC110502210 LOC106561405 coding upstream 103116 83377647 ~ 83395033 (+)
LOC110497874 btbd11 coding upstream 153497 83241269 ~ 83344652 (+)
LOC110497928 LOC106561399 coding downstream 50655 83661951 ~ 83682409 (+)
LOC110497962 tmem5 coding downstream 202904 83814200 ~ 83818689 (+)
LOC110497968 LOC106561395 coding downstream 212287 83823583 ~ 83979825 (+)
LOC110497974 LOC106561394 coding downstream 389784 84001080 ~ 84025490 (+)
LOC110497999 LOC106561392 coding downstream 566776 84178072 ~ 84295747 (+)
G194267 NA non-coding upstream 65715 83432197 ~ 83432434 (+)
G194266 NA non-coding upstream 66012 83431906 ~ 83432137 (+)
G194263 NA non-coding upstream 68281 83429668 ~ 83429868 (+)
G194241 NA non-coding upstream 100500 83395782 ~ 83397649 (+)
G194594 NA non-coding downstream 138720 83750016 ~ 83750257 (+)
G194595 NA non-coding downstream 139241 83750537 ~ 83750842 (+)
G194603 NA non-coding downstream 153177 83764473 ~ 83764767 (+)
G194610 NA non-coding downstream 160675 83771971 ~ 83772186 (+)
G194611 LOC106581772 non-coding downstream 161526 83772822 ~ 83773070 (+)
LOC110497837 tmem263 other upstream 373184 83119221 ~ 83124965 (+)
G193339 LOC106561425 other upstream 843719 82652633 ~ 82654430 (+)
LOC110497686 NA other upstream 1075967 82417794 ~ 82426875 (+)
G193170 bhlh3 other upstream 1094314 82401113 ~ 82403835 (+)
LOC110497665 LOC106561427 other upstream 1109628 82366183 ~ 82393779 (+)
G195155 NA other downstream 985114 84596410 ~ 84600324 (+)
LOC110498034 LOC106573178 other downstream 1399168 85010068 ~ 85054392 (+)
G197069 NA other downstream 2524320 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 3426215 87037511 ~ 87039236 (+)
G198575 NA other downstream 3538906 87150202 ~ 87150490 (+)

Expression


Co-expression Network