LOC110497928 (LOC106561399)


Basic Information

Item Value
gene id LOC110497928
gene name LOC106561399
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83661951 ~ 83682409 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574407.2
GAGGTGTAAAGTGGGTTTGCCCAGTCTCATGCTTTGAATGACGCTATCGTCTCGCTTTCGCTGAAGTTTGCCTGTTGCCTCGACAAGAGAGGATCCGAGGTGATCGCGTTTAACGCTGTTGATCATTACCTGTGGTCGCGCATAGGGGGACGAAAGACAGATAATCGCATTTTTTCCCGACTTGCTTCGTTTTTCTGTACTATTTGGAAAAACAATGCtcttagctttttttttttttttacggataACACTCACTGTTTCGTGTATGAAGGCGTAATCGTTGTGTAGTGGAGTAGCTCTGATTCTGTGAGGCCAAAGATAACTCTTCTTTGGGAAACCAAACATGCCGCGGAGGAAGCAAGAAGCGCCCAAGCGCGCTGCAGCCTACTCTCCAGAGGAGatgaaggaggaggtggaagaagaggatgTGGACTTTCCAGAGGAGGTAGAGAGCTCAGAAAATGACCTTCTCACCAAAGAGCCACTGGGTGACCAGGACTCCATTGCTGGGGCTGAGCTCTCTGCTCAGGAGATGGACAGTGAATCACACGTGAGCGAGGCCAGCGACCCCCTGTCAGACTTTGAAACCGCCTCAGTCAAATCTGAGGGGCCTGCCAAAGAGCCTCTGAACGGCGCAGGGGTGAGGGTAGGGACCCCCTCGGGCCTGGACACTCCCTTGGCGCAGGACACCCTGGAACAGATGAAGGCAATCTACTCCAGCTTCCTGACAAACTCCTATTGGTCACCCCTGAACTTTAACTCAACCCTGACACAGACACCGACACCCGTGGAGAAGCCACCGCGGACTAGCAGCACTAGCAGTagctgcagcagcagtagttatGACTGGCACCAGTCCGCAGTGGCTAAATCCCTGCAGCAGCAGGCCTCTCAGAGCCTCCACAACCCTCCTCCCTCAGAGCCCAGTATCTTCAGCACAGTGCAGCTCCACAGGCAGAACCCCAGACTGTACGGCAACATCTTCACCGGGGCCAGCAAATTTCGCTGCAAGGGTTGCAGCGCTGCTTACGACACCCTGGTGGACCTCACTGTGCACATGAATGATACGGGTCACTACCGCGATGACAACCACGATAGGGGAGCCAATGGGGCCAGGGGGCGCTGGTCCAAGCCTCGCAAGCGCTCCCTGCTGGAGATGGAGGGCAAGGAGGATGCCGCGAAGGTGCTGAAGTGCATGTACTGTGGCCACTCCTTCGAGTCCCTGCAGGACCTGAGCGTTCACATGATCAAGACCAAACACTACCAGAAAGTGCCTCTGAAGGAACCCTTGGCCCCTGTGGCAGCCAAAATGATCTCAAGAAAGAGAGGCCCACTCTCTGGGAGCCTGGACCTCCCTGGCTCCCCACGCTCAAGAGAGGCGACCCCCAAAGCCTTTGTAGGTAGTGACCACAACATCCCATCCAACAAGGCTTCCAACCCCTACATCACCCCCAACAACCGCTTTGGCCACCAGAACGGCGCCAGCTATGCATGGCAGTTTGAATCTCGCAAGTCCCAGATCCTCAAGTGCATGGAGTGCGGGAGTTCCCACAATACACTGCAGGAGCTGACCGCCCACATGATGGTGACAGGTCACTTCCTCAGGGTCACCAACGGCAACCCCCCTAGTAAGAGAGGTAGGCCAGTCCCAGAGGCCACGTCCCCCAGCCCTGTACAGGCCACGCCCACCAATGAGGAGCAGGTTCAATCTATCCCATTAGCTCCTTCTAcattctcccctcctccaccctctgccGTATCACCCCCGgctatctcccctcctctcaaagACATTAagaaagaggagatggaggaagagttTACCCAGGACATGGTTAGCCATGACAAGCAGGTGTTGAACGGGGACGATGATGATGAGTTGGAGGAGAAGTTTGACATCTCCACCAAGTATAACTATCTGACTGAGGAGGACCTGAAAGAGAGCCCCAAAGGCGGCTTCGACATCCTCAAGTCCCTGGAGAACACCGTGACATCAGCAATCAACAAAGCCCAGAGTGGTAACCCCAGCTGGGGGGGATACCCCAGTATCCACGCTGCCTATCAGTTCCCCAACTCTCTGAATATGCCCCAGGGTAGCCCTGAGAAGAGCTCCCCTGTCAAGTACCTGTTcaatggaggggagggggggctttCCTCCCTCAGCATGTCCCAGTCTCCGATCTTCCCACCCGATAGTCAGAGCTCTGCCCTCCCCCACCTCAATAACTTCCAGGCCATGGAGGAGCTGGTGAAGAAGGTGACAGAGAAAGTGGCCAAAGTGGAGAGGAGGGTAAAGAGCGAGGTGTCCCCCAAGAAAGAGGTGAACCTCTCACCCTGTAGCAGTGAGGGGTGGGAATCCACTGGAGCAGACTCACCCCGAGAGTGGAGGTCAGTGACCCTGGCTAGCAGCAACAGAGGTAGCCATAGCGACAGGGTCTCACCGTTCGAGAGAGAGTGCATGAGAGAAATGGTCCAATCGCCTGCCTCCGCTTTGAGCTGCAGCACAGCCTTCATAACAGGCCACAACCCTCTGGAGCAGCCCTTTGTTAACCCTTTAAGTGCCCTTCAGTCTGTGATGAATATCCACCTGGGGAAAGCAGCCAAGCCCACCCTGCCCAGCCAGGACCCTCTCAGTCTGATGTCCAGGCTGAGCCAGAGTATGGCCGAGAGGGCCGCCGTGGCCGCTGCCCCCACGCACAGCAAAAAACACCCAGTGCCCATGGCTCGTAGTAGTGTCTGTCAGTCCAGTGATGACCAGCCCATGGACCTGACCAAAGGGAAGAGTGATCGAGGTGGCTCTATTGGCTCTGCTCCTCTGACTCCCTCCTCAAcagcctcctccatctccccttccTCAATGGTGATCCCTGCTAAAATGACCGTGGTCTCTCCCTTCACATCCAGCAGCCCTCACCATGAAAACGCCCTGTCGGACATCTCCGACATGTTGAGGAACCTGACACAATCAGCACACCACATCTCCATGCCTCCCTCACGGACCAGGATCACGGAGCGGGTCACAGACATGGTGGGCTCCACCACCGCAGAGGATGCTGAGGGGTCCATGGCCAATAAGAGGAAGGGGCGTCAGTCCAACTGGAACCCCCAGCACCTGATCCTCCTGCAGGCCCAGTTCTCCTCCAGCCTCAGACAGACGTCCGAGGGGAAGTACATCATGTCTGACCTGAGCCCCCAGGAGAGGATGCACGTGTCCCGTTTCACTGGCCTTTCCATGACTACCATCAGCCACTGGCTGGCCAATGTCAAGTACCAGCTGAGGAGGACTGGCCGGACCAAGTTCCTCAAGAACCTGGACTCGGGCCACCCAGTGTTCTTCTGCAGCGAGTGTGCTTCACAGATCCGGACCCCCACTGCCTACATTTGCCACCTGGAGGCCCACCTGGGCTTCAGACTGAAGGACCTGGCCAAGCTCTCCCCCAAACAGACCCTGAGGGACTCCCCGAAGGGTGGGTCTGATAAACTTCCCCAACCggaccccttcctcctctcctctccaccctcctcccagtCACTGGAGGAGGCCAGTGGGACTGTGTACCGGTGCCAGCTGTGTATCCGTAAGTTTGCCAGTAAGCATGCCATCAAGCTCCACCTCAGCAAGAGCCACGGGATGTCCCCGGAGGACCACCTGCTGTATGTCTCTGAGATAGAGAAACACTAGAAGTAGAATTGTTATTACATTATAGAAACActtgagtgctgccagcattggaCATACTGGAATATACGCTGTAAAAAAAGAGAATTTACAAaggaaaaaagaaaacaaatgaaGTGTGTGACAAAAATGCACAATGATGCCATTAACTACTGTTAAGTGTCAGCACATGGTATTTACTTCCATGGCCTTTGCTTCTCTGTATTTTTCTCTTTCAAAAGACATTCATTTCATATGTTGAAGATATAGGTCATGAATATTCAGCTTTCAAAGGGATAGTTTGCTCAAATTGCAAAGTTCCATGTTTCCTTACCTTTTACCGTAAGTTGTCTATTGACCAGGAAGGACCACGATACACACTTAAGATTTGTTTTCTTCGCTGAAGGTTAGGAAACATTTAAGTCATTTTGTGTTTTGGGTAAACTCTCCCTTTGGAAAGTATATCAGTTTTATGACAAGGTATTTATTTGGTGAAGTTTCTATACATTTGTTGAACTGCATGTATGCATTGACAAGTTAACAGTTCAAAACAAACAGTTTTTAGTTGGTCCATTTTTACTGTAAGATATCTGGCAAGTATGTGGGAGTGCTCTTTCTGAGAATTTGCCAAATGAATTGACAACATAGTAAGTAGTCTTACATCACATTTTATATGATTTTTATACACAGTTTGTGTTGCAGATCTGTCAAATCTGCCACATTGCTTATCATCAAGTCAGGGGACCTCAAAATCCAGGTCTATAtagaaatgtatatacagtatataggctTACCACTTGTTGTTATGCATACTTGTTATATTTCCTCATTTAAGAGGACTATGACTATCCACTGGTGCAGAGCCTTTGAAGAAGACTAACATGAATATGTTTTGCACAATAGTTTTCTAAATGTTATTTGATAAAACAAAGTCTATAAAATGGAACGTTGTTCATGCCCTGTTGCTTCTATTAAATTGGCTTAAATTGCA

Function

NR:

description
teashirt homolog 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574407.2 True 4649 mRNA 0.52 2 83661951 83682409

Neighbor

gene id symbol gene type direction distance location
LOC110502224 LOC106561400 coding upstream 50655 83498149 ~ 83611296 (+)
LOC110497903 LOC106561401 coding upstream 190168 83433218 ~ 83471783 (+)
LOC110497890 LOC106561402 coding upstream 239601 83408936 ~ 83422350 (+)
LOC110497881 LOC106561403 coding upstream 253183 83400959 ~ 83408768 (+)
LOC110502210 LOC106561405 coding upstream 266918 83377647 ~ 83395033 (+)
LOC110497962 tmem5 coding downstream 131791 83814200 ~ 83818689 (+)
LOC110497968 LOC106561395 coding downstream 141174 83823583 ~ 83979825 (+)
LOC110497974 LOC106561394 coding downstream 318671 84001080 ~ 84025490 (+)
LOC110497999 LOC106561392 coding downstream 495663 84178072 ~ 84295747 (+)
LOC110498007 LOC106561389 coding downstream 614147 84296556 ~ 84382755 (+)
G194362 NA non-coding upstream 64739 83594899 ~ 83597212 (+)
G194380 NA non-coding upstream 137479 83524251 ~ 83524472 (+)
G194374 NA non-coding upstream 153942 83507790 ~ 83508009 (+)
G194371 NA non-coding upstream 159566 83502169 ~ 83502385 (+)
G194368 NA non-coding upstream 161713 83499829 ~ 83500238 (+)
G194594 NA non-coding downstream 67607 83750016 ~ 83750257 (+)
G194595 NA non-coding downstream 68128 83750537 ~ 83750842 (+)
G194603 NA non-coding downstream 82064 83764473 ~ 83764767 (+)
G194610 NA non-coding downstream 89562 83771971 ~ 83772186 (+)
G194611 LOC106581772 non-coding downstream 90413 83772822 ~ 83773070 (+)
G194395 NA other upstream 102353 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 536986 83119221 ~ 83124965 (+)
G193339 LOC106561425 other upstream 1007521 82652633 ~ 82654430 (+)
LOC110497686 NA other upstream 1239769 82417794 ~ 82426875 (+)
G193170 bhlh3 other upstream 1258116 82401113 ~ 82403835 (+)
G195155 NA other downstream 914001 84596410 ~ 84600324 (+)
LOC110498034 LOC106573178 other downstream 1328055 85010068 ~ 85054392 (+)
G197069 NA other downstream 2453207 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 3355102 87037511 ~ 87039236 (+)
G198575 NA other downstream 3467793 87150202 ~ 87150490 (+)

Expression


Co-expression Network