LOC118942895


Basic Information

Item Value
gene id LOC118942895
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83798504 ~ 83800597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038542.1
TACCTCACGGAATGTGGAAAGAGACCGTTTGTAATATGTTTAATCTAACAATTTTGCGAGAAAGGGAAAAGTGTCTGTAGCCTATTGTGAAATGCAAAGTTTTACAATATGTAATCATTTTTCAtgcatttgcaacattgttgtGCTTGAGCGCAGTTTACCCAGAGTACACCGGGAAACGGGCAGAGGAACATGGCGCAGGGTCGACGAGGAGGACGCTGAACAATTGAGGATTACATTCCGTGGATATTTCGGAGATCATGCTGAAATCCTAAAATGAGAATGTGAAATGGTTTCACTCCCGAAATCTTGGATATCTACCACTGCCCCTTTGATGAATAATAGGAAAACGCCTCTCAGGAATACCTGCAATTGCATTCATAAACATTTTTTTAGGACTTACAAACCCTGAGCATTGTTTTTTATTCACAAACGTCACATTTTCATCTAAATATTACATGGGAAAATGGCTGAGAGAAATAAAATGATTATAGAGGTCCCACAAGGAGTTGATAGACTTCGAGTGGAGcataaaaagGTGGTGCAAGGCTGTGAAGGTCAGATCCAGCACTGGGCGAAGGTAAAGGGTGACTATGAAACCCTCGAGGATCGACTCAAAACTCTTCCAGATCAGGTGTCCTATGACATCATGGTACGTTCCATCTTTCtcttatcaaatcaaagtttattggttgcgcacacagatttgcagatgttatcgcaggtgcaacAAAATGCAATAACAa

Function

NR:

description
unconventional prefoldin RPB5 interactor 1-like isoform X1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038542.1 True 746 mRNA 0.41 3 83798504 83800597

Neighbor

gene id symbol gene type direction distance location
LOC110497945 LOC106561398 coding downstream 6679 83779372 ~ 83791825 (-)
LOC110497937 LOC106561440 coding downstream 21168 83735711 ~ 83777336 (-)
LOC118944150 NA coding downstream 48833 83749617 ~ 83749671 (-)
LOC110497857 cry1 coding downstream 559388 83224373 ~ 83239116 (-)
LOC110502187 NA coding downstream 574532 83219964 ~ 83223972 (-)
LOC110497954 LOC106561396 coding upstream 8608 83809205 ~ 83812698 (-)
tbxas1 LOC106561393 coding upstream 230119 84030716 ~ 84175738 (-)
LOC110502226 LOC106573176 coding upstream 755869 84556466 ~ 84585407 (-)
LOC110498022 LOC106561385 coding upstream 796336 84596433 ~ 84910878 (-)
LOC110498041 LOC106561383 coding upstream 1258150 85058747 ~ 85102785 (-)
G194690 NA non-coding downstream 31635 83766655 ~ 83766869 (-)
G194684 NA non-coding downstream 40345 83757917 ~ 83758159 (-)
G194683 NA non-coding downstream 40659 83757616 ~ 83757845 (-)
G194678 NA non-coding downstream 46489 83751775 ~ 83752015 (-)
G194677 NA non-coding downstream 47469 83750649 ~ 83751035 (-)
G195377 NA non-coding upstream 4213 83804810 ~ 83805012 (-)
G195378 NA non-coding upstream 4502 83805099 ~ 83805409 (-)
G195375 NA non-coding upstream 6996 83807593 ~ 83808362 (-)
G195445 LOC106561395 non-coding upstream 113766 83914363 ~ 83915156 (-)
G195450 LOC103371712 non-coding upstream 124781 83925378 ~ 83926069 (-)
G194491 NA other downstream 182470 83615566 ~ 83616034 (-)
G193755 NA other downstream 790528 83005830 ~ 83007976 (-)
G193745 NA other downstream 886000 82901640 ~ 82912504 (-)
cart2 LOC105018397 other downstream 2604659 81192528 ~ 81194099 (-)
G195427 NA other upstream 80943 83881540 ~ 83904451 (-)
G195486 LOC106573171 other upstream 177368 83977965 ~ 83982167 (-)
G197498 slc25a18 other upstream 2035702 85831239 ~ 85843493 (-)
G197554 NA other upstream 2159248 85959845 ~ 85963665 (-)

Expression


Co-expression Network