LOC110497954 (LOC106561396)


Basic Information

Item Value
gene id LOC110497954
gene name LOC106561396
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83809205 ~ 83812698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574443.2
GAAACTTTTTGGAATTAATCTACGTGAAGCATCTTTTTATTACGAAATAAGTCACCTATTTTATATTTTGATAATTAATGCGACTATTGAGGCATAATGGTAGCTAAATACTAAATAAATTGCTAACAGTATCCTAAAATATACGTCAGGATTTTACGCAGGCCGATCGACCTGCCAATAAATGGAGGAACTCACGGGTCTTTTCAAAGGTCGGTGTGTCCCTCAACCGAGTTAAATTACTGGTTCGGATAAAGATGCTGTCCTTAGCCGCTCGTTCTGGGGCTTTGTTCCCGTACTTGCAGGCGACCAATGTAGCTGTGAATGGATCCCTCAAAGCACTGCTCCCTGGAGCGGTGAAGGGAGATTCACTGCTGAAATCCAGCTCACAGAAGACGCCCGCTATTTCAGCTTGCGTTAGTGCCCCTGGTGGAATTCGCATGGCCCACACAGACATCAAGGTCCCAGACTTCTCTGACTACCGTCGTCCTGAGTTGCTGGACCCCAAGAAGTCCTCCCAGGAGAGCAGCGAGTCCAGGAAGACCTTCTCCTACCTGGTCACTGGGGCCACAGCTGTGGTGGGCGTCTACACAGCCAAGACGGTGGCCACCCAGTTCATCTCCTCTATGAGCGCCTCAGCCGACGTGCTGGCCATGTCCAAGATTGAGGTGAAGCTGGGAGAGATCCCAGAGGGCAAGAACATGACCTTCAAGTGGAGGGGCAAGCCTCTCTTCATCCGCCACCGAACTGAGAAGGAGATCGCCACCGAGGAAGCTGTGGATATGGCCATGCTACGTGACCCCCAACACGACAAGGACCGCGTAGCCAACCCGAAGTGGATCATCGTGATCGGTGTCTGCACCCACCTGGGCTGTGTGCCCATCGCCAATGCCGGAGACTACGGAGGATACTACTGTCCCTGCCACGGCTCCCACTACGACGCCTCGGGGAGAATTCGGAAGGGACCCGCACCTCTCAACCTAGAGGTGCCCTATTACGAATTCCCAGACGACGACACCGTTGTTGTGGGATAATGTTTGCGCTCCATTACTTCCCTCGCTagtatatttatttgttttttcaAATGGTTAAATCTGAGAACTTAGGTTAAAGAAAGGTTACTAATAAAGGGGCATTTTAAAATAACCTGAAA

Function

NR:

description
cytochrome b-c1 complex subunit Rieske, mitochondrial-like

GO: NA

KEGG:

id description
K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574443.2 True 1150 mRNA 0.50 2 83809205 83812698

Neighbor

gene id symbol gene type direction distance location
LOC118942895 NA coding downstream 8608 83798504 ~ 83800597 (-)
LOC110497945 LOC106561398 coding downstream 17380 83779372 ~ 83791825 (-)
LOC110497937 LOC106561440 coding downstream 31869 83735711 ~ 83777336 (-)
LOC118944150 NA coding downstream 59534 83749617 ~ 83749671 (-)
LOC110497857 cry1 coding downstream 570089 83224373 ~ 83239116 (-)
tbxas1 LOC106561393 coding upstream 218018 84030716 ~ 84175738 (-)
LOC110502226 LOC106573176 coding upstream 743768 84556466 ~ 84585407 (-)
LOC110498022 LOC106561385 coding upstream 784235 84596433 ~ 84910878 (-)
LOC110498041 LOC106561383 coding upstream 1246049 85058747 ~ 85102785 (-)
LOC110502232 LOC106561380 coding upstream 1658241 85470939 ~ 85487796 (-)
G195375 NA non-coding downstream 843 83807593 ~ 83808362 (-)
G195378 NA non-coding downstream 3796 83805099 ~ 83805409 (-)
G195377 NA non-coding downstream 4193 83804810 ~ 83805012 (-)
G194690 NA non-coding downstream 42336 83766655 ~ 83766869 (-)
G194684 NA non-coding downstream 51046 83757917 ~ 83758159 (-)
G195445 LOC106561395 non-coding upstream 101665 83914363 ~ 83915156 (-)
G195450 LOC103371712 non-coding upstream 112680 83925378 ~ 83926069 (-)
G195458 NA non-coding upstream 127288 83939986 ~ 83940416 (-)
G195462 NA non-coding upstream 132575 83945273 ~ 83945489 (-)
G195476 NA non-coding upstream 151438 83964136 ~ 83965047 (-)
G194491 NA other downstream 193171 83615566 ~ 83616034 (-)
LOC110502187 NA other downstream 586061 83219964 ~ 83223972 (-)
G193755 NA other downstream 801229 83005830 ~ 83007976 (-)
G193745 NA other downstream 896701 82901640 ~ 82912504 (-)
cart2 LOC105018397 other downstream 2615360 81192528 ~ 81194099 (-)
G195427 NA other upstream 68842 83881540 ~ 83904451 (-)
G195486 LOC106573171 other upstream 165267 83977965 ~ 83982167 (-)
G197498 slc25a18 other upstream 2023601 85831239 ~ 85843493 (-)
G197554 NA other upstream 2147147 85959845 ~ 85963665 (-)

Expression


Co-expression Network