LOC110497974 (LOC106561394)


Basic Information

Item Value
gene id LOC110497974
gene name LOC106561394
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 84001080 ~ 84025490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574474.2
ATTGTCAGTTTCGTTTCTCCAGAAGTGGAACTGACGACATACAAATTTAGGGTGAGGTGATGAGCATAAAGATACTAGGTGCCTACCATAAAGATACTAGGTGCCTACCATAACGATACTAGGTGCCTACCATAACGATACCAGGTGCCTACTATAACACGATGTCGTCTGTGGTGTCTCAATATGTTACAAAAATTATCTGTGGAAATCAAGGATGTTTGGACTTCAAGCAGCTTGACCAGATCGTTGGTCAAAAGTTCACTTGTGCAAATGAGGACCTACTTGGAATACTTCGTGACAGCAGAAAATATGCCATCAGTGAAGGCAAAGAAAATGCTTCGGGTTGTGTTATGAGCCAGGACAGTGTTATTGTTGCTAAGACTTCACTACGAGTCTGTCAAACCTCTCATAAAGAGTGTCATCAGTGCGATAATTTACACATATGCAGCCACTTTGTATGCGGTAACTGCAAGTACGGGAACAAGTGCAAAAAGGCCCACAGTCTAGATTGCCCACACAACGCAGCTATTATAAGTGAGGTGGGTCACCATGACCtgggggaggcagagctgttcCAACTTCTGCTGCAGAACGACCCCTACCTGATGCCTAAGATCTGCTCCCATTACAACAAGCGCGTTGGTGAGCATGGCATCTGCAAGTTTAAAAGCAGCTGCACAAAACTCCACCTCTGCCTGCACTTCCTCCAGGGTGACTGTAGGTTTGGTGCTGGTTGTAAGAGGGCCCACACGTTCGATGCCCCTGCAATGAAGATTCTAAACAGCAGAGGATTCAGCCAAGAGAACATCAAGATCCTCCACACTATCTACAAGAATAAATTCATCATCACTTACCAAGAAAATCCAGCTGCTGTAGCACCCTCCCTTGCTCCAGTCATGATGCCAGTTGAGAAACATCAGCCCTCCTCCAGCTCCACCAGTGAGACTGACAGGAATGAAATCTGCCTCTTCTCCATCCGCAGTCGCTGCAGCTTCAAAGACACATGTGTCCGTGTCCACTACCATCTGCCTTACAAATGGCAGATCTTAGATGGAGTGACTTGGAGAGACCTGGACAATGTAGAGGAGATTGAGAAGGCCTACTGTAACCCACAAAATGACACAAGTGGAGGAAGTAAGCCTGTGAACTTCCTCACCATGACATGTGGAAGCCCTCCAGTTCGTCGTCTGTCCACTGTTTCATCCGTCACCAAACCCCCTTACTTCATCCTCACAACAGAGTGGCTGTGGTACTGGAGACATGACTGTGGCCAGTGGATAGAGTATGGCCATGAGGATGGTGAGGGGAATGTGACCTCTGTCATTTCCCAGACCCTTGAGAATGCTTACCAAACTGACTCTGACAGCGAGATTACATTTGAATGTGGAGATCAGAAGTACATTCTCAGTCTCAAAGagaTGCATCAGCAGAATATTAGATTTAAAACCAAAAGAGCAATTTGTAGAAGGCCCTGTTTTCTCTCTAAGGAAGATGTGAATGCCAAGCTGAAGAGtgagtCTAAGGAGAGCTCCAGCTCCTCTGTGACTGTCCCTCCACACTGGGACAAAGGAGTCTTGTCTGATGCCACAGACTACAAGCTGGTTCCACTCTCAAGCCAGATAGAAGAGTACCAAAAGTTGGAGAAGCTATTCAAAAATACCATGGCCAGCAGCACCATCCACAGCATCAAACGGATCCAGAACCCCTCACTCTGGAGGGTCTTCCAGTGGCAGAAGGAACAGATGATGAAGAAGAATGGCGGGAAACTGGTTGATGAGAGAGAATTGTTCCACGGCACAGACCACTCTATCATAGATGTCATCTGTGAACAGAACTTTGACTGGAGGACCAGCGGTGTCAATGCAACACTTTATGGCCAAGGGAGCTACTTTGCTAGAGATGCCTCATACTCTAACAAGTACATAAGATCTCAGAGCGGCAGTAAGAAGATTATGTTtgtggttctggtcttggttggAGAGTTCACCAATGGGTGTCGAACATACCGTCGTCCACCTCAGAAAAGCACCAGCAAGGTCCTCTACGACAGCTGTGTCGACTCAGAAAACAACCCATCCATTTTTGTTGTGTTTGAGAAACAGCAGATTTATCCTGAATACCTAATTGAGTACTCCTAAAATCCACAGGGGTCAATACCAATGTCTTCCACTGAAGACAACTGATATTTTGTGACTTGCTAACAGTCCTCACATGCTCTAcctactgtatttctgttatttcTGTATTGAAATGGGGCTAGTGATTTATTGAATTGGGGCTAGTTTTGGGgtatttttttgttattattttgGCTCTTTTAATCCATTTCGCCAGTTCAGTGCTATAgcatgattgaaatttaaaggcaatgttcccacgcTCACAGTCgctttgtcacgccctggtcttagtattttgtgtttcctttattattttggtcaggccagggtgtgacatggg

Function

NR:

description
poly [ADP-ribose] polymerase 12-like

GO: NA

KEGG:

id description
K15259 PARP7S; poly [ADP-ribose] polymerase 7/11/12/13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574474.2 True 2460 mRNA 0.46 12 84001080 84025490

Neighbor

gene id symbol gene type direction distance location
LOC110497968 LOC106561395 coding upstream 21255 83823583 ~ 83979825 (+)
LOC110497962 tmem5 coding upstream 182391 83814200 ~ 83818689 (+)
LOC110497928 LOC106561399 coding upstream 318671 83661951 ~ 83682409 (+)
LOC110502224 LOC106561400 coding upstream 389784 83498149 ~ 83611296 (+)
LOC110497903 LOC106561401 coding upstream 529297 83433218 ~ 83471783 (+)
LOC110497999 LOC106561392 coding downstream 152582 84178072 ~ 84295747 (+)
LOC110498007 LOC106561389 coding downstream 271066 84296556 ~ 84382755 (+)
LOC110498015 LOC106561386 coding downstream 398881 84424371 ~ 84541661 (+)
LOC110498034 LOC106573178 coding downstream 984578 85010068 ~ 85054392 (+)
LOC110498064 NA coding downstream 1166524 85192014 ~ 85194828 (+)
G194788 NA non-coding upstream 51628 83948071 ~ 83949452 (+)
G194777 NA non-coding upstream 75837 83919370 ~ 83925243 (+)
G194611 LOC106581772 non-coding upstream 228010 83772822 ~ 83773070 (+)
G194610 NA non-coding upstream 228894 83771971 ~ 83772186 (+)
G194603 NA non-coding upstream 236313 83764473 ~ 83764767 (+)
G194804 NA non-coding downstream 5239 84030729 ~ 84032440 (+)
G194806 LOC106561393 non-coding downstream 52798 84078288 ~ 84142920 (+)
G194947 NA non-coding downstream 155840 84181330 ~ 84183318 (+)
G195158 NA non-coding downstream 578462 84603952 ~ 84685605 (+)
G194395 NA other upstream 441482 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 876115 83119221 ~ 83124965 (+)
G193339 LOC106561425 other upstream 1346650 82652633 ~ 82654430 (+)
LOC110497686 NA other upstream 1578898 82417794 ~ 82426875 (+)
G193170 bhlh3 other upstream 1597245 82401113 ~ 82403835 (+)
G195155 NA other downstream 570920 84596410 ~ 84600324 (+)
G197069 NA other downstream 2110126 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 3012021 87037511 ~ 87039236 (+)
G198575 NA other downstream 3124712 87150202 ~ 87150490 (+)

Expression


Co-expression Network