tbxas1 (LOC106561393)


Basic Information

Item Value
gene id tbxas1
gene name LOC106561393
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 84030716 ~ 84175738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574506.2
AAAGAGCCGTTCCAGACTCTAAAGTCAGGAGGACTTTGAGAGTTGGGTGTTATACAGCGTACCCACACATGGATAGGCTAAATATTACTCATCAGAGCTCCTCGCAGTCGAACACGACAACCAGCAAAGCCAGGAGCTCGTTGGCCGGTGGTAGTTTTGGCCTGAGTTGGTGATCGGCATCATGGAGGTGGTTATGAACATTCTCAAGACACCAGTGCCCAGTGGGGTGTCCATGACCCTGGGCCTGTTCATGATCTTCCTGGCTCTGCTGTACTGgTATGCTACGTTCCCCTATTCGTCCCTGGCTCAATGTGGAATAAGGCACCCCAAACCATCCCCATTCTTTGGGAACCTGTTTCTATTTCGTCAGGGCTTTTTCGGTGTTCATACAGACCTGATTCACAAGTATGGGAGAGTATGTGGATATTATCTAGGCAGGAGGCCCGTGGTGGTGGTAGCTGACCCTGATATGCTCAGACAGATCATGGTGAAGGACTTCAGCACCTTCCCCAACAGAATGACAATCCGCGCCGCTACTAAGCCCATGAGTGACTGTCTGCTGATGCTGAGGAACGAGCACTGGAAGAGAGTACGCAGCATCCTCACCCCCTCCTTCAGCGCAGCCAAGATGAAAGAGATGGGTCCTCTGATCAACACTGCTACTGACACCCTGCTCACCAACCTCAATTGTCATGCTGAGTCTGGAGAGAGCTTTGACATTCACAGGTGTTTTGGCTGTTTCACCATGGACGTGATTGCCAGCGTTGCATTTGGCACTCAGGTGGACTCTCAGAAGGACCCAGATGACCCGTTTGTCCACCACGCCCAGAagttcttctctttctccttcttcaCACCCATCATGTTCATCTTCATTGCTTTTCCATTCCTGATTCCTCTGGCCCGTTTCCTCCCCAACAAGAGGAGGGATGAGATGAACAACTTCTTCATCAACTGCATTCAGAAGATcatcagacagagagatgagcagcCAGTTGAAGAGCGGCGGCGAGACTTCCTACAGCTGATGCTGGAAACGCGGAGCAGCAAGGAGTGTGTGTCGCTGGAGCACTTTGACGTGGTCAACCATGCAGATGAGCTggcccccacacacactcacacaaaccaGCAAGAAAATGTTGACGTCAGCCATGAGTCACCCAACAGGCGCTCTGTCCAGACCCAGAAGAGGATGATGTCGGATGATGAGATCGTGGGCCAGGCATTTGTGTTCTTCTTGGCGGGGTATGAGACCAGTAGCAACACGCTAGCCTTCACCTGCTACCTCCTGGCTCTACACCCAGAGTGTCAGAGCAAACTGCAGGCTGAGGTGGATGACTTCTTCACCAGATATGATTCACCAGATTACACCAATGTCCAGGAGCTGAAATATCTTGACATGGTCATATCAGAAGCTCTGCGCCTCTACCCGCCTGGTTTCAGGTTTGCCCGTGAAGTTGACGAGGACTGCATGGTGAATGGACAGTTCCTACCCAAGGGAGCCACCCTGGAGATCCCTGCAGGCTATCTGCACTATGATCCAGAGTACTGGCCCGAGCCAGAGAAGTTCATCCCTGAGAGATTCACAGTGGAGGCCAAGGCCAGCAGACACCCGTTTGTGTACCTGCCGTTTGGGGCGGGGCCCCGCAGCTGTGTCGGCATGAGGCTGGCCCAGCTGGAGATCAAGATGGCCCTGGTGCATGTCTTCAGGAAGTTCAACATTGTGGCCTGCACAGACACCAAGGTTCCTCTGGAGTTGAAGTCTCACACCACTCTCGGACCCAAGAATGGCATCTATGTGACAATCActaaaagagagatagagggagaaccGGCGACTCCCCCTGCAGGAGAATAGCTCTGTTCTGTATCTGCTTTCTAGAACGTAGTGTGATTTCTATGAAACAGATACATTATCCATCCAGTGACTGCTTATTTTAAGGCTAAAAATAAAGTAACATtaacctagcctggtcccagatctgtttgtgctgtcttgctaaCTTCTATGGTTATTGTCACACTTTTGGCACTCCCTTTACATAAGAGAGTTGGCAATAAAGCACAAACaaatctgagaccaggctagcaTTAACCTCTTCTTTAACTTAAacatctaaaagtatttggttaaatgtacttaagtatcaaaagtaaaacatttcaaattcctcatattaagcaaaccagacggtaccatttgtattttattttaaaaaaatacatggaTAGACAGGGCCACATTCCAACAtgcagacatcatttacaaatgaagcatgtgtgtttagtgagtctgccagattagaagcagtagggatgactgtGAATTGCACtattttcctgttctgctaagctatcaaaatgtaacaagtacttttgggtgtcaggaaaaatgtgtggagtaaaaagtacattattaaaagtaaaagttgtcaaaaataagtcaagtacagatacccccaaaaactactacagtagtactataaagtatttttacttaagtactttatgcAACTGCTTCCATGGTAAATTACAATTTGCACAGAAAAAGTGAGGTTGTGCCAGGGGCAGCTCACCTTTTTAATCAGCCAATGTACTGGATGGAGGTCAAGCCCTCCAAGAGGCCCCTGCCAATGGCACAATGATCGCCACGGTGATTCTGCAGgactagagagagggggaggagaagcaTGCTGGGGGAACTGTGAGCTGGTGGGAGGGGGAAGACTGTGGCAAACTTCTTATTACAGAAGAACAACATTCCTTGACATCTGTATAAATTCATGTTGATATCCATTGTTACTGAATAGTCACTGCAGGACTGCATTAAAGGGAAGGATCAATTCATAGTATAATGTATGTTAGAACATGCCCATTAactattaaagggatagttcactcaaataaaaaaatatataatattggTTTTCCTGTAAGTAGTCTATGGATAAGACCATCCATGCTTTAGTTTGGTTTACCTGTCCACTGTCTCCAAATACTATGCAattaccttgtccatagactttTTACAGGGTAAAGTAATCCGAATGTTTGTCATTTGGATGGACTATCCCTTTAAGGATTTGTATTGTCTCTCCCAACAGCTCTATGGCTGGAAAGTGAGTCTTTGCAAGCATCCTCGCAATTATCCATCATAACAGTGTTGGCATTGACTAAATGTTATAGGACCTCTCCCTCACAGATTTCCAAATctttcatctttaaaatgaagcTATGATTTACATGAAGGTAATACTAATAAGATCACGACTCGATGAGAGCGGAAAGCAATATCAGCTCACTCCATTTCTCATTTCCTCTTAAGTTGAAAAGCTCTGATGTTACTGTGTATGATTTCTTTAAGCTTGACTGTATAGAATTTATACCAATGTGATGGTTTTAATTGTGTTGATTTGGAGTGTTGCTCTGCAATTTGATGTTACATATTCATTAAATGTGAAATTAATAATCAAAA
>XM_021574487.2
CACGCACAGATGTAGTCCTTCTAGAGAACTACAGTACGTATTCATCTCTTCCGTGTCAACAACAAGAAGTCGGCCAACTATATATACTCCACAATCAAGTAATACCGAGGTAAGAATTAAAAGGAGCTCGTTGGCCGGTGGTAGTTTTGGCCTGAGTTGGTGATCGGCATCATGGAGGTGGTTATGAACATTCTCAAGACACCAGTGCCCAGTGGGGTGTCCATGACCCTGGGCCTGTTCATGATCTTCCTGGCTCTGCTGTACTGgTATGCTACGTTCCCCTATTCGTCCCTGGCTCAATGTGGAATAAGGCACCCCAAACCATCCCCATTCTTTGGGAACCTGTTTCTATTTCGTCAGGGCTTTTTCGGTGTTCATACAGACCTGATTCACAAGTATGGGAGAGTATGTGGATATTATCTAGGCAGGAGGCCCGTGGTGGTGGTAGCTGACCCTGATATGCTCAGACAGATCATGGTGAAGGACTTCAGCACCTTCCCCAACAGAATGACAATCCGCGCCGCTACTAAGCCCATGAGTGACTGTCTGCTGATGCTGAGGAACGAGCACTGGAAGAGAGTACGCAGCATCCTCACCCCCTCCTTCAGCGCAGCCAAGATGAAAGAGATGGGTCCTCTGATCAACACTGCTACTGACACCCTGCTCACCAACCTCAATTGTCATGCTGAGTCTGGAGAGAGCTTTGACATTCACAGGTGTTTTGGCTGTTTCACCATGGACGTGATTGCCAGCGTTGCATTTGGCACTCAGGTGGACTCTCAGAAGGACCCAGATGACCCGTTTGTCCACCACGCCCAGAagttcttctctttctccttcttcaCACCCATCATGTTCATCTTCATTGCTTTTCCATTCCTGATTCCTCTGGCCCGTTTCCTCCCCAACAAGAGGAGGGATGAGATGAACAACTTCTTCATCAACTGCATTCAGAAGATcatcagacagagagatgagcagcCAGTTGAAGAGCGGCGGCGAGACTTCCTACAGCTGATGCTGGAAACGCGGAGCAGCAAGGAGTGTGTGTCGCTGGAGCACTTTGACGTGGTCAACCATGCAGATGAGCTggcccccacacacactcacacaaaccaGCAAGAAAATGTTGACGTCAGCCATGAGTCACCCAACAGGCGCTCTGTCCAGACCCAGAAGAGGATGATGTCGGATGATGAGATCGTGGGCCAGGCATTTGTGTTCTTCTTGGCGGGGTATGAGACCAGTAGCAACACGCTAGCCTTCACCTGCTACCTCCTGGCTCTACACCCAGAGTGTCAGAGCAAACTGCAGGCTGAGGTGGATGACTTCTTCACCAGATATGATTCACCAGATTACACCAATGTCCAGGAGCTGAAATATCTTGACATGGTCATATCAGAAGCTCTGCGCCTCTACCCGCCTGGTTTCAGGTTTGCCCGTGAAGTTGACGAGGACTGCATGGTGAATGGACAGTTCCTACCCAAGGGAGCCACCCTGGAGATCCCTGCAGGCTATCTGCACTATGATCCAGAGTACTGGCCCGAGCCAGAGAAGTTCATCCCTGAGAGATTCACAGTGGAGGCCAAGGCCAGCAGACACCCGTTTGTGTACCTGCCGTTTGGGGCGGGGCCCCGCAGCTGTGTCGGCATGAGGCTGGCCCAGCTGGAGATCAAGATGGCCCTGGTGCATGTCTTCAGGAAGTTCAACATTGTGGCCTGCACAGACACCAAGGTTCCTCTGGAGTTGAAGTCTCACACCACTCTCGGACCCAAGAATGGCATCTATGTGACAATCActaaaagagagatagagggagaaccGGCGACTCCCCCTGCAGGAGAATAGCTCTGTTCTGTATCTGCTTTCTAGAACGTAGTGTGATTTCTATGAAACAGATACATTATCCATCCAGTGACTGCTTATTTTAAGGCTAAAAATAAAGTAACATtaacctagcctggtcccagatctgtttgtgctgtcttgctaaCTTCTATGGTTATTGTCACACTTTTGGCACTCCCTTTACATAAGAGAGTTGGCAATAAAGCACAAACaaatctgagaccaggctagcaTTAACCTCTTCTTTAACTTAAacatctaaaagtatttggttaaatgtacttaagtatcaaaagtaaaacatttcaaattcctcatattaagcaaaccagacggtaccatttgtattttattttaaaaaaatacatggaTAGACAGGGCCACATTCCAACAtgcagacatcatttacaaatgaagcatgtgtgtttagtgagtctgccagattagaagcagtagggatgactgtGAATTGCACtattttcctgttctgctaagctatcaaaatgtaacaagtacttttgggtgtcaggaaaaatgtgtggagtaaaaagtacattattaaaagtaaaagttgtcaaaaataagtcaagtacagatacccccaaaaactactacagtagtactataaagtatttttacttaagtactttatgcAACTGCTTCCATGGTAAATTACAATTTGCACAGAAAAAGTGAGGTTGTGCCAGGGGCAGCTCACCTTTTTAATCAGCCAATGTACTGGATGGAGGTCAAGCCCTCCAAGAGGCCCCTGCCAATGGCACAATGATCGCCACGGTGATTCTGCAGgactagagagagggggaggagaagcaTGCTGGGGGAACTGTGAGCTGGTGGGAGGGGGAAGACTGTGGCAAACTTCTTATTACAGAAGAACAACATTCCTTGACATCTGTATAAATTCATGTTGATATCCATTGTTACTGAATAGTCACTGCAGGACTGCATTAAAGGGAAGGATCAATTCATAGTATAATGTATGTTAGAACATGCCCATTAactattaaagggatagttcactcaaataaaaaaatatataatattggTTTTCCTGTAAGTAGTCTATGGATAAGACCATCCATGCTTTAGTTTGGTTTACCTGTCCACTGTCTCCAAATACTATGCAattaccttgtccatagactttTTACAGGGTAAAGTAATCCGAATGTTTGTCATTTGGATGGACTATCCCTTTAAGGATTTGTATTGTCTCTCCCAACAGCTCTATGGCTGGAAAGTGAGTCTTTGCAAGCATCCTCGCAATTATCCATCATAACAGTGTTGGCATTGACTAAATGTTATAGGACCTCTCCCTCACAGATTTCCAAATctttcatctttaaaatgaagcTATGATTTACATGAAGGTAATACTAATAAGATCACGACTCGATGAGAGCGGAAAGCAATATCAGCTCACTCCATTTCTCATTTCCTCTTAAGTTGAAAAGCTCTGATGTTACTGTGTATGATTTCTTTAAGCTTGACTGTATAGAATTTATACCAATGTGATGGTTTTAATTGTGTTGATTTGGAGTGTTGCTCTGCAATTTGATGTTACATATTCATTAAATGTGAAATTAATAATCAAAA
>XM_021574496.2
GAAAAAACCACGCACAGATGTAGTCCTTCTAGAGAACTACAGTACGTATTCATCTCTTCCGTGTCAACAACAAGAAGTCGGCCAACTATATATACTCCACAATCAAGTAATACCGAGGAGCTCGTTGGCCGGTGGTAGTTTTGGCCTGAGTTGGTGATCGGCATCATGGAGGTGGTTATGAACATTCTCAAGACACCAGTGCCCAGTGGGGTGTCCATGACCCTGGGCCTGTTCATGATCTTCCTGGCTCTGCTGTACTGgTATGCTACGTTCCCCTATTCGTCCCTGGCTCAATGTGGAATAAGGCACCCCAAACCATCCCCATTCTTTGGGAACCTGTTTCTATTTCGTCAGGGCTTTTTCGGTGTTCATACAGACCTGATTCACAAGTATGGGAGAGTATGTGGATATTATCTAGGCAGGAGGCCCGTGGTGGTGGTAGCTGACCCTGATATGCTCAGACAGATCATGGTGAAGGACTTCAGCACCTTCCCCAACAGAATGACAATCCGCGCCGCTACTAAGCCCATGAGTGACTGTCTGCTGATGCTGAGGAACGAGCACTGGAAGAGAGTACGCAGCATCCTCACCCCCTCCTTCAGCGCAGCCAAGATGAAAGAGATGGGTCCTCTGATCAACACTGCTACTGACACCCTGCTCACCAACCTCAATTGTCATGCTGAGTCTGGAGAGAGCTTTGACATTCACAGGTGTTTTGGCTGTTTCACCATGGACGTGATTGCCAGCGTTGCATTTGGCACTCAGGTGGACTCTCAGAAGGACCCAGATGACCCGTTTGTCCACCACGCCCAGAagttcttctctttctccttcttcaCACCCATCATGTTCATCTTCATTGCTTTTCCATTCCTGATTCCTCTGGCCCGTTTCCTCCCCAACAAGAGGAGGGATGAGATGAACAACTTCTTCATCAACTGCATTCAGAAGATcatcagacagagagatgagcagcCAGTTGAAGAGCGGCGGCGAGACTTCCTACAGCTGATGCTGGAAACGCGGAGCAGCAAGGAGTGTGTGTCGCTGGAGCACTTTGACGTGGTCAACCATGCAGATGAGCTggcccccacacacactcacacaaaccaGCAAGAAAATGTTGACGTCAGCCATGAGTCACCCAACAGGCGCTCTGTCCAGACCCAGAAGAGGATGATGTCGGATGATGAGATCGTGGGCCAGGCATTTGTGTTCTTCTTGGCGGGGTATGAGACCAGTAGCAACACGCTAGCCTTCACCTGCTACCTCCTGGCTCTACACCCAGAGTGTCAGAGCAAACTGCAGGCTGAGGTGGATGACTTCTTCACCAGATATGATTCACCAGATTACACCAATGTCCAGGAGCTGAAATATCTTGACATGGTCATATCAGAAGCTCTGCGCCTCTACCCGCCTGGTTTCAGGTTTGCCCGTGAAGTTGACGAGGACTGCATGGTGAATGGACAGTTCCTACCCAAGGGAGCCACCCTGGAGATCCCTGCAGGCTATCTGCACTATGATCCAGAGTACTGGCCCGAGCCAGAGAAGTTCATCCCTGAGAGATTCACAGTGGAGGCCAAGGCCAGCAGACACCCGTTTGTGTACCTGCCGTTTGGGGCGGGGCCCCGCAGCTGTGTCGGCATGAGGCTGGCCCAGCTGGAGATCAAGATGGCCCTGGTGCATGTCTTCAGGAAGTTCAACATTGTGGCCTGCACAGACACCAAGGTTCCTCTGGAGTTGAAGTCTCACACCACTCTCGGACCCAAGAATGGCATCTATGTGACAATCActaaaagagagatagagggagaaccGGCGACTCCCCCTGCAGGAGAATAGCTCTGTTCTGTATCTGCTTTCTAGAACGTAGTGTGATTTCTATGAAACAGATACATTATCCATCCAGTGACTGCTTATTTTAAGGCTAAAAATAAAGTAACATtaacctagcctggtcccagatctgtttgtgctgtcttgctaaCTTCTATGGTTATTGTCACACTTTTGGCACTCCCTTTACATAAGAGAGTTGGCAATAAAGCACAAACaaatctgagaccaggctagcaTTAACCTCTTCTTTAACTTAAacatctaaaagtatttggttaaatgtacttaagtatcaaaagtaaaacatttcaaattcctcatattaagcaaaccagacggtaccatttgtattttattttaaaaaaatacatggaTAGACAGGGCCACATTCCAACAtgcagacatcatttacaaatgaagcatgtgtgtttagtgagtctgccagattagaagcagtagggatgactgtGAATTGCACtattttcctgttctgctaagctatcaaaatgtaacaagtacttttgggtgtcaggaaaaatgtgtggagtaaaaagtacattattaaaagtaaaagttgtcaaaaataagtcaagtacagatacccccaaaaactactacagtagtactataaagtatttttacttaagtactttatgcAACTGCTTCCATGGTAAATTACAATTTGCACAGAAAAAGTGAGGTTGTGCCAGGGGCAGCTCACCTTTTTAATCAGCCAATGTACTGGATGGAGGTCAAGCCCTCCAAGAGGCCCCTGCCAATGGCACAATGATCGCCACGGTGATTCTGCAGgactagagagagggggaggagaagcaTGCTGGGGGAACTGTGAGCTGGTGGGAGGGGGAAGACTGTGGCAAACTTCTTATTACAGAAGAACAACATTCCTTGACATCTGTATAAATTCATGTTGATATCCATTGTTACTGAATAGTCACTGCAGGACTGCATTAAAGGGAAGGATCAATTCATAGTATAATGTATGTTAGAACATGCCCATTAactattaaagggatagttcactcaaataaaaaaatatataatattggTTTTCCTGTAAGTAGTCTATGGATAAGACCATCCATGCTTTAGTTTGGTTTACCTGTCCACTGTCTCCAAATACTATGCAattaccttgtccatagactttTTACAGGGTAAAGTAATCCGAATGTTTGTCATTTGGATGGACTATCCCTTTAAGGATTTGTATTGTCTCTCCCAACAGCTCTATGGCTGGAAAGTGAGTCTTTGCAAGCATCCTCGCAATTATCCATCATAACAGTGTTGGCATTGACTAAATGTTATAGGACCTCTCCCTCACAGATTTCCAAATctttcatctttaaaatgaagcTATGATTTACATGAAGGTAATACTAATAAGATCACGACTCGATGAGAGCGGAAAGCAATATCAGCTCACTCCATTTCTCATTTCCTCTTAAGTTGAAAAGCTCTGATGTTACTGTGTATGATTTCTTTAAGCTTGACTGTATAGAATTTATACCAATGTGATGGTTTTAATTGTGTTGATTTGGAGTGTTGCTCTGCAATTTGATGTTACATATTCATTAAATGTGAAATTAATAATCAAAA

Function

NR:

description
thromboxane-A synthase-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K01832 TBXAS1, CYP5A; thromboxane-A synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574506.2 False 3475 mRNA 0.45 14 84030716 84169587
XM_021574487.2 False 3465 mRNA 0.45 14 84030716 84175730
XM_021574496.2 True 3459 mRNA 0.45 14 84030716 84175738

Neighbor

gene id symbol gene type direction distance location
LOC110497954 LOC106561396 coding downstream 218018 83809205 ~ 83812698 (-)
LOC118942895 NA coding downstream 230119 83798504 ~ 83800597 (-)
LOC110497945 LOC106561398 coding downstream 238891 83779372 ~ 83791825 (-)
LOC110497937 LOC106561440 coding downstream 253380 83735711 ~ 83777336 (-)
LOC118944150 NA coding downstream 281045 83749617 ~ 83749671 (-)
LOC110502226 LOC106573176 coding upstream 380728 84556466 ~ 84585407 (-)
LOC110498022 LOC106561385 coding upstream 421195 84596433 ~ 84910878 (-)
LOC110498041 LOC106561383 coding upstream 883009 85058747 ~ 85102785 (-)
LOC110502232 LOC106561380 coding upstream 1295201 85470939 ~ 85487796 (-)
LOC110498116 LOC106561379 coding upstream 1362645 85538383 ~ 85545472 (-)
G195521 NA non-coding downstream 1610 84028792 ~ 84029106 (-)
G195520 NA non-coding downstream 2202 84028063 ~ 84028514 (-)
G195476 NA non-coding downstream 65669 83964136 ~ 83965047 (-)
G195462 NA non-coding downstream 85227 83945273 ~ 83945489 (-)
G195458 NA non-coding downstream 90300 83939986 ~ 83940416 (-)
G195615 NA non-coding upstream 29658 84205396 ~ 84295740 (-)
G195734 NA non-coding upstream 205828 84381566 ~ 84419895 (-)
G195739 NA non-coding upstream 211826 84387564 ~ 84388420 (-)
G195999 NA non-coding upstream 617548 84793286 ~ 84801094 (-)
G195486 LOC106573171 other downstream 48549 83977965 ~ 83982167 (-)
G195427 NA other downstream 126265 83881540 ~ 83904451 (-)
G194491 NA other downstream 414682 83615566 ~ 83616034 (-)
LOC110502187 NA other downstream 807572 83219964 ~ 83223972 (-)
G193755 NA other downstream 1022740 83005830 ~ 83007976 (-)
G197498 slc25a18 other upstream 1660561 85831239 ~ 85843493 (-)
G197554 NA other upstream 1784107 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 2727298 86903036 ~ 86903956 (-)
G198912 NA other upstream 3146401 87322139 ~ 87326469 (-)

Expression


Co-expression Network