LOC110498041 (LOC106561383)


Basic Information

Item Value
gene id LOC110498041
gene name LOC106561383
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85058747 ~ 85102785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574594.2
TATAGCTACAGACGATGCGCGAGTCTTGTCAGCTTTTTTGAAAGTTCCTCCCCCGCAGGCAGTTCAGTGAAATTCCTCCACTGTTACATTGTAAACAGAAGAAATACAGCTTTATCAAATTGTGACAAAGACACACTTTTGATGTTGTCTACGACTATCTTTACTGCCTTCACATGACCTGAGTGCACCTGACCCATGTGAaggagtagggggagagagagagaaagcggagtCACACCACATACCACACGCCATGGCAGCTTTCACCAGTACCCCGAAAGTGAATTCCGGGAGTGCTCCTCGCCACGGGTTCAGGGTGGAGAGCCCAGCGGAGTGTGACTGGAAGGACTATGACACTGGAGGCAGCGAGAGGTCTAGAGGACATCGCACCATGCTGGAGAAGACCCATGACTTCTTCCAGACCTGTGACATTGAGGACAAGGGCTTCATCACCCGCCGGGACATGCAGAGGCTCCATGGAGAGCTGCCCCTCAGTGCCGAGGAGCTGGAGAACGTCTTTGACACCCTGGACTCTGACGGCAATGGATACCTCACCCTGGAGGAATTCTCCTTGGGCTTTAGTGAGTTCCTGTTTGGCCGGAGGATCTCTGCAACAGAGGGGAGGGACAGCCCCATTGCCAAGGAACCCACTCAGGGCCCTCCAGACTCCCTGTACCAGACCCAGTGGGAGGAACGGTTGGTGGGCAGcgaggacgaggaggagaagCACTTCTGCATGCTAATGGAGAGCTTGGGAGCCAGCAACGTCTTTGAGGACCCTGGTGAGGTGCGTAGTCTTTGGGCCCAGCTGAGGAGGGACGAGCCGCACCTCCTGTCCAACTTTGAGGAGTTCCTGGCCAGAGTAATTTTACAGATCACAGGGGCCAACcaggagaggatggagatggagagcgcCCTTAAAAgAAAATCAGCAACACATGACGATGAGATCCATCGCTTATATGAAGAAATGGAACAGCAAATCAAAAAGGAGAAGGACAGGATCTTACTGCAGGACTCTGAGCACTTCTTGTCTAGGAGTCAGGATCTGGAGCATCAGCTGTCCAGTAAGGAAAGGGAGCTGGATCAGATCTTCCAGAAACAAAGGAGGTGGGAGCTTCAGTGCCGGGAGCTGCACAGCGAGCAACATGTGACCAAGGTGGAGAACGTGGCACTGAAGCAGACCAATGAGGAGCTGGCCCAGGAGCTGGAGCACACCAGTCAGGAGCTGAGCCTGGCCCAGGAGCAGCTGGTCCTCCTGCAGGAGCAGTCCTCACACCTGAACCAGGAGAGGGAGATGGAGATGTACCGGGTCACAGAGGGATTgcagagggagcgagcgagcctGCTGAAACAACTTGACCTGCTGAGGGAAATGAACAAGCACTTACGAGATGAGCGAGACATGTGCTCTTATCAAAAACTGAGGAATACTGTTAAAAATCCTGCTTCCAACCTgagacctggatcaaatactcTGAATCCCTTTGACAGAAAGGCCTTTAGTGAGGATGAGGAGGTAGTGCTCCCCCAATCTAAGAGGAAGAGTCCAGGTGGAGTGAATGGCTACAGCCTGGAGGACGTGGTGGATTCCAGACCCCTCAACAGACCCCTCCAGAGGATCATCTCCATAGAGGAGGACCACCTACCCCAGCTCCTACAGGATAACTACCAGACTCAGCTCTGGGAGTGGCATGAGGAGGCCGAGGAGGAAGAGCACATAGAGCTACAGATGACCTCTATAAATCCTCCCAGTTCTCCTCCAACGatggagcagcagcagccagttgacaccagagagacagagatgcctACATCCCCCAGGGGCCAGCCTGTCGGAAAGGAGACTATGGGGAATGAGGAGGGTGCAGCGTTGGCCCCAGACCGCCTGTTTAAGATCGTCCTGGTGGGCAACTCCAGTGTGGGGAAGACCTCTCTCCTCAGGCGGTTCTGTGATGACTGCTTTTACCCAGGCACCTCTGCCACCGTCGGCATAGACTACAGTGTGAAGACGATACGGGTGGACAACAGCCAGGTGGCGCTGCAGATGTGGGATACAGCAGGACAGGAGAGgtATCGCAGCATCACCAAGCAGTTCTTCCGCAGGGCTGACGGTGTGGTAGTCATATATGACATTACTGCTGAGCAGAGTTTTACCGCGGTGAGGCAGTGGCTGACCAGTGTACAGgAGGGGGCTGGCGAGGACATTCCCATCATGCTGCTGGGGAACAAAATGGACAAGGGGAGTGAGCGGAAGGTTCAGACGAGAATGGGCGAAAAATTAGCCAAGGACTGCCAGTTGATTTTCTACGAGTGCAGTGCTTGCTCTGGACAAAACGTGGTAGACTCAATGGTAAATTTGGCAAGAATTCTGAAAgagcaggaggacagagagaaagagaagacgaTCCATCTGGTAAACAGCCCTTCACAGAATAAGAGGTCCTGCTGCTAGCAACTTAATGGCTATTAGTTACTGTCTTCACAACACCATAGTGTACTCACATGTACCTGTTCAGATGTTCACTGTACATTTTAACCTCCGGTCCTTAGGAACTCAAGGATCTATAGCacaatgcagttgaagtcggaagtttacatacatcgtagccaaatacatttaaactcagtttttcacaatccctgacatttaatcctagtaaaaattccctgttttaggtcagttaggatcacca
>XM_021574603.2
GGCAGTTCAGTGAAATTCCTCCACTGTTACATTGTAAACAGAAGAAATACAGCTTTATCAAATTGTGACAAAGACACACGTTTGATGTTGTCTACGACTATCTTTACTGCATTCACATGACCTGAGTGCACCTGACCCATGTGAaggagtagggggagagagagagaaagcggagtCACACCACATACCACACGCCATGGCAGCTTTCACCAGTACCCCGAAAGTGAATTCCGGGAGTGCTCCTCGCCACGGGTTCAGGGTGGAGAGCCCAGCGGAGTGTGACTGGAAGGACTATGACACTGGAGGCAGCGAGAGGTCTAGAGGACATCGCACCATGCTGGAGAAGACCCATGACTTCTTCCAGACCTGTGACATTGAGGACAAGGGCTTCATCACCCGCCGGGACATGCAGAGGCTCCATGGAGAGCTGCCCCTCAGTGCCGAGGAGCTGGAGAACGTCTTTGACACCCTGGACTCTGACGGCAATGGATACCTCACCCTGGAGGAATTCTCCTTGGGCTTTAGTGAGTTCCTGTTTGGCCGGAGGATCTCTGCAACAGAGGGGAGGGACAGCCCCATTGCCAAGGAACCCACTCAGGGCCCTCCAGACTCCCTGTACCAGACCCAGTGGGAGGAACGGTTGGTGGGCAGcgaggacgaggaggagaagCACTTCTGCATGCTAATGGAGAGCTTGGGAGCCAGCAACGTCTTTGAGGACCCTGGTGAGGTGCGTAGTCTTTGGGCCCAGCTGAGGAGGGACGAGCCGCACCTCCTGTCCAACTTTGAGGAGTTCCTGGCCAGAGTAATTTTACAGATCACAGGGGCCAACcaggagaggatggagatggagagcgcCCTTAAAAgAAAATCAGCAACACATGACGATGAGATCCATCGCTTATATGAAGAAATGGAACAGCAAATCAAAAAGGAGAAGGACAGGATCTTACTGCAGGACTCTGAGCACTTCTTGTCTAGGAGTCAGGATCTGGAGCATCAGCTGTCCAGTAAGGAAAGGGAGCTGGATCAGATCTTCCAGAAACAAAGGAGGTGGGAGCTTCAGTGCCGGGAGCTGCACAGCGAGCAACATGTGACCAAGGTGGAGAACGTGGCACTGAAGCAGACCAATGAGGAGCTGGCCCAGGAGCTGGAGCACACCAGTCAGGAGCTGAGCCTGGCCCAGGAGCAGCTGGTCCTCCTGCAGGAGCAGTCCTCACACCTGAACCAGGAGAGGGAGATGGAGATGTACCGGGTCACAGAGGGATTgcagagggagcgagcgagcctGCTGAAACAACTTGACCTGCTGAGGGAAATGAACAAGCACTTACGAGATGAGCGAGACATGTGCTCTTATCAAAAACTGAGGAATACTGTTAAAAATCCTGCTTCCAACCTgagacctggatcaaatactcTGAATCCCTTTGACAGAAAGGCCTTTAGTGAGGATGAGGAGGTAGTGCTCCCCCAATCTAAGAGGAAGAGTCCAGGTGGAGTGAATGGCTACAGCCTGGAGGACGTGGTGGATTCCAGACCCCTCAACAGACCCCTCCAGAGGATCATCTCCATAGAGGAGGACCACCTACCCCAGCTCCTACAGGATAACTACCAGACTCAGCTCTGGGAGTGGCATGAGGAGGCCGAGGAGGAAGAGCACATAGAGCTACAGATGACCTCTATAAATCCTCCCAGTTCTCCTCCAACGatggagcagcagcagccagttgacaccagagagacagagatgcctACATCCCCCAGGGGCCAGCCTGTCGGAAAGGAGACTATGGGGAATGAGGAGGGTGCAGCGTTGGCCCCAGACCGCCTGTTTAAGATCGTCCTGGTGGGCAACTCCAGTGTGGGGAAGACCTCTCTCCTCAGGCGGTTCTGTGATGACTGCTTTTACCCAGGCACCTCTGCCACCGTCGGCATAGACTACAGTGTGAAGACGATACGGGTGGACAACAGCCAGGTGGCGCTGCAGATGTGGGATACAGCAGGACAGGAGAGgtATCGCAGCATCACCAAGCAGTTCTTCCGCAGGGCTGACGGTGTGGTAGTCATATATGACATTACTGCTGAGCAGAGTTTTACCGCGGTGAGGCAGTGGCTGACCAGTGTACAGgAGGGGGCTGGCGAGGACATTCCCATCATGCTGCTGGGGAACAAAATGGACAAGGGGAGTGAGCGGAAGGTTCAGACGAGAATGGGCGAAAAATTAGCCAAGGACTGCCAGTTGATTTTCTACGAGTGCAGTGCTTGCTCTGGACAAAACGTGGTAGACTCAATGGTAAATTTGGCAAGAATTCTGAAAgagcaggaggacagagagaaagagaagacgaTCCATCTGGTAAACAGCCCTTCACAGAATAAGAGGTCCTGCTGCTAGCAACTTAATGGCTATTAGTTACTGTCTTCACAACACCATAGTGTACTCACATGTACCTGTTCAGATGTTCACTGTACATTTTAACCTCCGGTCCTTAGGAACTCAAGGATCTATAGCacaatgcagttgaagtcggaagtttacatacatcgtagccaaatacatttaaactcagtttttcacaatccctgacatttaatcctagtaaaaattccctgttttaggtcagttaggatcacca

Function

NR:

description
ras and EF-hand domain-containing protein homolog

GO: NA

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574594.2 False 2696 mRNA 0.52 18 85058747 85098054
XM_021574603.2 True 2639 mRNA 0.52 18 85058747 85102785

Neighbor

gene id symbol gene type direction distance location
LOC110498022 LOC106561385 coding downstream 147869 84596433 ~ 84910878 (-)
LOC110502226 LOC106573176 coding downstream 473340 84556466 ~ 84585407 (-)
tbxas1 LOC106561393 coding downstream 883009 84030716 ~ 84175738 (-)
LOC110497954 LOC106561396 coding downstream 1246049 83809205 ~ 83812698 (-)
LOC118942895 NA coding downstream 1258150 83798504 ~ 83800597 (-)
LOC110502232 LOC106561380 coding upstream 368154 85470939 ~ 85487796 (-)
LOC110498116 LOC106561379 coding upstream 435598 85538383 ~ 85545472 (-)
LOC118936851 NA coding upstream 594635 85697420 ~ 85699798 (-)
LOC110502240 nup205 coding upstream 608754 85711539 ~ 85726478 (-)
dennd11 kiaa1147 coding upstream 631474 85734259 ~ 85748399 (-)
G196274 NA non-coding downstream 2746 85049550 ~ 85056001 (-)
G196029 NA non-coding downstream 208293 84850156 ~ 84850454 (-)
G196000 NA non-coding downstream 255280 84795894 ~ 84803467 (-)
G195999 NA non-coding downstream 257653 84793286 ~ 84801094 (-)
G196310 NA non-coding upstream 5137 85107922 ~ 85108548 (-)
G196325 NA non-coding upstream 14874 85117659 ~ 85117883 (-)
G196594 NA non-coding upstream 92112 85194897 ~ 85198587 (-)
G196643 NA non-coding upstream 159767 85262552 ~ 85263420 (-)
G196725 NA non-coding upstream 287178 85389963 ~ 85424322 (-)
G195486 LOC106573171 other downstream 1076580 83977965 ~ 83982167 (-)
G195427 NA other downstream 1154296 83881540 ~ 83904451 (-)
G194491 NA other downstream 1442713 83615566 ~ 83616034 (-)
LOC110502187 NA other downstream 1835603 83219964 ~ 83223972 (-)
G197498 slc25a18 other upstream 733514 85831239 ~ 85843493 (-)
G197554 NA other upstream 857060 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 1800251 86903036 ~ 86903956 (-)
G198912 NA other upstream 2219354 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 4504052 89606837 ~ 89609890 (-)

Expression


Co-expression Network