LOC110498095 (fam180a)


Basic Information

Item Value
gene id LOC110498095
gene name fam180a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85465054 ~ 85470682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574681.2
agagagagagagaatttcagAAAGGAGGAGCGCAGTTGCAGTGGTGGGATGGTCTGAGGTTTTTCCCAGTGGAGTGACTGTGGTCCTTGATCGTGGTCCTCGACCTGTGGCTCTGTCCAGTCTGTCCCTGGCTACTGGATGCCAGGTGGATACCAGGTCACCATGATGCCCTGGAAGATGGTCATTGTTGCACTATTTTATTGCAATATCCACACATGTGCCACTTATCGGCATAACAAAGtTCTTTACCCATCAACTGTTCGAGTGAAGAGAGGAATGGCATCAATGGTGAACCCCACTTTTCAGAACTCTATAGAGGATGTCAATTTACTATTTGAGATCCTGCTGGCTGGCCTGCAGTTTGGAGACGAGCACACTCTGTTCTCCGTGCAGGACGAGGAGTTGGCCTCCCTGCGGAAGACCAAAAAGCTGGAAGTCATCTGCGAGGACATCCTGCCCAAAACACTCTCTGATATCCATcgcctgacctctgacctttccaATCACATGGGCCACCTGCGCCTGGAGGACTTTGAGCGCACTGTGCTGACCATGGTGTACACCGCCCAGCGGCTGGCCAACGCTACCACAGACCAGCAAAGAGACTTGTGGGCAGAGTCCTTTGTCAGTTTGTACAGAGCTATCAAGCTGGACCTGACAGCTGAGAACGACCTCACAGCTAAATGATATCGCAATGTTGGGGATTGATACTGCCTTTATTTCCAGATCTCTATTGGAGAAGGAATTTCTCTCATTTTCTATTATTCATTATAGATAcgatgtttcagcatgatattcTTGGCAACCCTTGAGTACTATCGTATCACATGGACTTAAAATTAAAGTTTCTGAGATACTTTAA

Function

symbol description
fam180a Predicted to be located in extracellular region.

NR:

description
protein FAM180A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574681.2 True 862 mRNA 0.48 3 85465054 85470682

Neighbor

gene id symbol gene type direction distance location
LOC110498083 LOC106561381 coding upstream 97492 85206278 ~ 85367562 (+)
LOC118937296 NA coding upstream 266952 85196609 ~ 85198102 (+)
LOC110498064 NA coding upstream 270226 85192014 ~ 85194828 (+)
LOC110498034 LOC106573178 coding upstream 410662 85010068 ~ 85054392 (+)
LOC110498015 LOC106561386 coding upstream 923393 84424371 ~ 84541661 (+)
LOC110498104 LOC106561378 coding downstream 44937 85515619 ~ 85594581 (+)
LOC110498123 LOC106561377 coding downstream 230088 85700770 ~ 85711408 (+)
agk LOC106561375 coding downstream 257302 85727984 ~ 85734628 (+)
wee2 LOC106561372 coding downstream 278079 85748761 ~ 85754211 (+)
bida LOC106561376 coding downstream 284943 85755625 ~ 85765031 (+)
G196791 NA non-coding upstream 3526 85460837 ~ 85461528 (+)
G196788 NA non-coding upstream 6920 85457908 ~ 85458134 (+)
G196783 NA non-coding upstream 12933 85451916 ~ 85452121 (+)
G196781 NA non-coding upstream 15604 85449126 ~ 85449450 (+)
G196522 NA non-coding upstream 71999 85388082 ~ 85393055 (+)
G196816 NA non-coding downstream 31209 85501891 ~ 85502224 (+)
G196877 NA non-coding downstream 131891 85602573 ~ 85603490 (+)
G196905 NA non-coding downstream 304806 85775488 ~ 85777938 (+)
G196990 NA non-coding downstream 371335 85842017 ~ 85843259 (+)
G197031 LOC106561367 non-coding downstream 479737 85950419 ~ 85950944 (+)
G195155 NA other upstream 864730 84596410 ~ 84600324 (+)
G194395 NA other upstream 1905456 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 2340089 83119221 ~ 83124965 (+)
G193339 LOC106561425 other upstream 2810624 82652633 ~ 82654430 (+)
G197069 NA other downstream 664934 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 1566829 87037511 ~ 87039236 (+)
G198575 NA other downstream 1679520 87150202 ~ 87150490 (+)
G198784 NA other downstream 2022941 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 2065254 87535936 ~ 87536928 (+)

Expression


Co-expression Network