XLOC_020712


Basic Information

Item Value
gene id XLOC_020712
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2078625 ~ 2087850 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042267
AGAGCACGGACAGACTTCGCTAGCATCACGTTGTTATTGCCGAGTGCGTTCAAATACAAtgtggatcagatTGTGTCGATTAAGAGATGTTGAGTGtctgaagctcttcccacactgaataCACGTGTATGgtctttctccagtgtgaatcatctggTGTGCTTTCAATAGTTGTATCCGACTGAATCTCTTGTTGCAATGTGTACACACGtagggtttctctccggtgtgaatcctctggtgctgTCTCAATTCTGGAGCTCTAAAAAACCTCTTCTTACATGCAAAGCACACaaactctttcacaccagtgtggatcttctgatgtctTCTTAAAACGGACTGCTGtgcaaaactcttcccacactcagaaCATGAATACGGCTTTTCTTTTGTATGAACTCGAAGATGCTTCGTCAGCTCTGAAGGCCTCAAAAACGTTTTGTTGCACTGATCACATCTgtgtggtttctctccggtgtggatcctcatgtgaaggTTGAGAGTGTATTTGCAGCTTAAACTCTTTCCACATCGAGTGCAGGTGAAATCATTTTCAGCTTCAGTCTTTGACTGAGTTTCAGTTTCacttttgacatgatgtttctcctcatcttcactcagatcttcactctcctcctccaccatcacatctg
>TCONS_00040901
ACTTCGCTAGCATCACGTTGTTATTGCCGAGTGCGTTCAAATACAAtgtggatcagatTGTGTCGATTAAGAGATGTTGAGTGTCTGAAGCTCTTCCCACAGTGAGTacatgtgtacggtttctctcctgTGTGAATCATCTGGTGTGCTTTCAATGGTTGTATCCGACTGAATGTCttgttgcagtgtgaacacacgtagggtttctctccggtgtgaatcctctggtgctgTTTCAATTCTGGAGCTCTAATAAACGTCTTCTTACACGCAAAGCACACaaactctttcacaccagtgtggatcttctcaTGTAGTTTCAGACCTGACTGCTGTGTaaagctcttcccacactcagaACATGAATACGGCTTTTCTTTTGTATGAACTCGAAGATGCTTCGTCAGCTCTGAAGGCCTCAAAAACGTTTTGTTGCACTGATCACATCTGtgaggtttctctccggtgtggatcctcatgtgaaggTTGAGAGTGTATTTGCAGcttaaactctttccacactgagtgcaggtgaaatcattttcagctgttgttgtttttaataaaaaagtttcagtttcacttttgacatgatgtttctcctcatcgtcactcagttcttcactctcctccttcacaATCACATCTGAAATGaattaaatacattacattttaagaagctagtttttaacaacacatgctgctctgggctagtttttagaGAATTTGTCTGATTGGCTGAAATGTGTAATTGGTTAAATAAATTTGCACCCTGTATGATACATttaaggctgtactcacactaggcaccTTTGCCTTGAACTGAGCCTAGGCGTAAATATTTCCCCCTTCCAGACAACCcacactaatattaataataataataacacattttatttaaagcgCCTTTCAAGAAACCCAAGGTCAATTATTATATCTATTTCAAACACTTCCAGTAGAAATATCAAATCATCAATTTAGcgaatggattaaattaatatcttgacttttatggcaaaaaaagaacccaaacactgcagttaaagggtcacaaaacacatttttgagctgttgacagtcgtataagtacagacaggacaatcaacacctactggagctgcgtctttttttaaaggagacgagcagcaaatccggattccACCATtaccagatgagaaaagctctcgggtaaaaaatgttccgtaCAAATGGATTTCTGCCGCACTGATACACACGTGAGTTCAGCAGCGctcggtttttcaaaagtaacccactaggattttggataagggattggatcaaatcttgaaaatggg
>TCONS_00042268
aaataccggtaaagtctttccggaaattttccagatatttaccggtatcactgtgtgaaaggggctattgtctggAGGGTTAAGTTCCAACCCAACTCCAACATACTTATCTGTAGATTTTAAACAAGCCTAAAGAACTCaatcagtttgatcaggtgtgtttaatcagggttggtactaaactatgcagagctgcggctctccaggagcCCTGTGTGTTAAACTGACAGGAATTTGTGCTACTGCCATGGTTTGCAAATCATAGTGACCAAATAGTCTCAGATAGAAAAATCAGCGAGCCACCAAAATGTCTCAAGCGCCCACCAACTGGACATTTTGAGAACAGCGCCTGAGATTTTAAAGCTGGATAAAAACATTTTAGTGGACTTTGGCTGGACTTATTTAACTCAgtgggtcctatcatacacccggtgcatcAGACacaattttttgctattttcagaccaatgcagctctaattttcacattttttgtgtgaaaaAAAGTGCGCTAAAGTACTGTAGAAAAGGCTGTGATGTGTATACATGGAACAATAGCGCCCTCTTGTGACTTTACTAAGTATTACACTCATGACGCACCTTCCCCTTtaaattatccctttaatagtTAAAGAGGAAACAGTTCAGAGCACGGACAGACTTCGCTAGCATCACGTTGTTATTGCCGAGTGCGTTCAAATACAAGTGAGTGCCCATTTAAAGTGTTATTTGaagtgttatttatcatttatatagcacaatgTTTAGCTGTCTATGCCTACGTTCAGTATAATCACTGATTACTGGTTATAATCATATAAGTGTGTCACGGGCGTCGAGTATTGCATCATCCATCGGCTCGCTAATGAATACTTATGTGAGATAAGTAAAAGGGAATATTTGGGTATAATATTGTTAACTGTTTGTCACTTTGAGTATTTACATATTGTTACTTTATGTTATAAGTGATATTTATGGTGAGAGTTAAACCATAATGACTGATTCTCTCAAGTTTACATGTTAGTGTATATAATGCCAATTCACAAGTGTTATTCAATGTCATACATGTCTGAATATATCAGTATGTTGTTATTATGCTGCCTTATATTATAATATCTGACTAAGAAATATTTATGTGTAGCATATtgtcattatattattgtttCTGTTCAGCACTAATAGATATTTGTTATTTCTGTTCATTTAGAACCACTCATATTAAGCTACACTTCAAGGCATTGTGCTACTCTGCTGTACTTCCAAATCCAAGGACTGTAAACTCTCAACCAGtatctgtttattaaagtgtTCTTCGTCTCTGACAGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000100755

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042267 False 656 lncRNA 0.44 2 2078625 2087205
TCONS_00040901 False 1316 lncRNA 0.40 2 2083693 2087192
TCONS_00042268 True 1326 lncRNA 0.37 1 2086525 2087850

Neighbor

gene id symbol gene type direction distance location
XLOC_020708 NA coding downstream 57152 1960038 ~ 2021473 (-)
XLOC_020709 NA coding downstream 64292 1994728 ~ 2014333 (-)
XLOC_020707 NA coding downstream 75683 1944933 ~ 2002942 (-)
XLOC_020706 NA coding downstream 117920 1924305 ~ 1960705 (-)
XLOC_020705 NA coding downstream 260409 1799199 ~ 1818216 (-)
XLOC_020713 NA coding upstream 8930 2096780 ~ 2125152 (-)
XLOC_020714 NA coding upstream 36759 2124609 ~ 2173341 (-)
XLOC_020715 NA coding upstream 105614 2193464 ~ 2399044 (-)
XLOC_020716 NA coding upstream 122085 2209935 ~ 2433876 (-)
XLOC_020717 NA coding upstream 136911 2224761 ~ 2228252 (-)

Expression


Co-expression Network