LOC110502232 (LOC106561380)


Basic Information

Item Value
gene id LOC110502232
gene name LOC106561380
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85470939 ~ 85487796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036957475.1
cacttgcttatgcaatgtaaacatatgtttcccatgccaataacacccttaaattgaaattgaattgagcgAGAGAGATGTTATATGTCATAGTTTGGCTCATTAgaatggggagaagggggaggaggttgAATCACATACAGTATTTTTCTCTGGTATACGGTACTGATGTCAGGGTTATACAGTAAAGAGTGTGTAGGATTCCAATTACTCTAAATGTGTTATTGTTTCTATTAGTTCAACATTGTGCTTTAGCAACACAATCATTGTTTGTCATGccaataaaagagagagagaaagagaggtagagctaGTGTCCTGAAAGGATCTATTCTACGGTCGCGAGGGCCTGATCAGCTGCTTGCCTTGCTGTTGTAATTGGGTTCACATGAGAGGCTGGTGGTGGAACTCATTTCAGTTACAATCAGCAACAGCAGTAGTCTCGTGTTCAACTCTCTCTTTACttactctctccatccctccttcccctatcttgctctctctctcccatctccctgcATACTATagctctctttttttctcctgctcctgtattctctctcctctttgctCGCCTGTTGAGATTATTCACTCATAACTCAGAGGACCCAACATCCTAGCTGAGTCCAGACTGGAGCCATGGCTCCAGAAAAGGAAAGCAATGGTCTCGAAAACTACGCATTTGCTatTGATGGGCGTTTCTGTGATCTGGAGAAGGATGAGGAGGGCTCCGACCTATCTGAGGAGGACGACAAGAACAAACTGGCCTACTGTGTCACAGACACCCCACCCTGGTACCTTTGCATCATTCTGGGCATCCAGcATTGCCTGACAGCGTTTGGAGGGATCATCGCCATCCCTCTGATCCTGTCTCAGGGTCTGTGTCTGCAGCATGACAGCCTGACCCAGGGTCACCTTATCAGCACCATCTTCTTTGTGTCAGGCGTGTGCACCCTGCTGCAGGTCACCTTTGGAATCAGaCTGCCCATTCTACAGGGGGGTACTTTCACCTTGCTGGCTCCCTCAATGGCCATGCTGTCGATGCCAGAGTGGACATGCCCTGCCTGGACCCAGAACGCTTCCTTGGTCAATGCCACCTCTCCTGAGTATGTAGAGGTGTGGCAGAGCCGCATGCGAGCGCTACAGGGCTCCATCATGGTGGGCTCCTTGTTCCAGGTCCTGGTGGGTTTCTCTGGCCTCATCGGTCTCTTCATGCGTTTCATTGGCCCCCTCACCATCGCACCCACCATCTCTCTGATTGGCCTGTCCCTATACGACTCAGCTGGAATGAATGCAGGGAACCACTGGGGCATCTCAACTATGACGACTGCTCTGATCATCCTGTTCTCCCAGTACCTCCGACACATCCCTGTACCATTTCCCACATACAGCAAGACCAAGAAACTCCACACCACCAAGATCTACATCTTCCAGATTCTACCAGTGCTCCTTGGCATCACACTGTCATGGCTGATCTGCTACATCTTCACCATCTCTGACGTCCTGCCCTCACAGCCGGGGCAATATGGCTACCTGGCTCGCACAGACCTGAAAGGGGATGTCATAGTCCAGGCCCCCTGGTTCAGATTCCCATACCCAGGTCAGTGGGGCTTACCAACAGTGAGCCTGGCAGGAGTGGTAGGGATCTTGGCTGGGGTGATATCCTCCATGATAGAGTCGGTGGGGGACTACCACGCCTGTGCCAGGCTGTCAGGGGCCCCTCCTCCCCCAAAACATGCCATCAACAGGGGCATTGGCATCGAGGGGCTTGGCTGTCTGCTGGCTGGGGCCTGGGGCACAGGCAACGGAACCACCTCCTACAGTGAGAATGTGGGAGCATTGGGGATCACCAAGGTGGGCAGTCGAATGGTGATCATTGCTGGAGGCGTCTTGCTGATCATCATGGGACTGTTTGGTAAAATTGGAGCCATTTTCACCACCATCCCCACACCTGTGGTTGGAGGAATGTTCTTGGTCATGTTTGGGGTCATATCTGCAGCTGGAGTTTCAAATCTGCAGTATGCAGACATGAACTCCTCCCGGAACATCTTTATCTTTGGGTTTTCCATGTTTTCCGGACTGGTCATTCCAAACTGGATATTCAAGAACCCAGATGCCATAGCAACAGGTGTGGTCGAGCTGGACCAACTGCTGCAGGTGCTTCTGACAACCAGCATGTTTGTTGGAGGCTTCTTTGGGTTCTTCCTTGATAACACCATTCCTGGAACCAAGCGAGAGCGAGGCATCACAGCCTGGAACAAGATCCACCTGGACGACTCCAGCAACACCTTGGAGAGTAGCGAGGTGTACAACCTTCCATTTGGAATCAGCTCTTGCCTCTCCTCCTACACCTGGGTTCGATATGTGCCGTTCCTCCCTCTGAATGCACCCAGCTCACAGGACAAGCCCGGGGTGGACTCTTTGGAGGCCAAGAAGCAACCTGGGAAGCCAGAGCCCTCACATATCATCAGATCAGTGGCCCTATGAACACTGAGCAAGCCCAGACTCTGGCTAAAaccacaacaacaataacaaaggCAGCTCTCGTGACTTGGACCACCTGTCCTGCTCTTAAGACACTGTAAAAGAACGCTATCCATACTTATTTAGTCAGACATTTTCTACTCACTTCTTGGCCAGAATCAGATTAGCAGTAACCCTCGTTAGCCAACAAACGCATAGCTTTTCATTGTTTTTGtttaggcagtgtcagaggtgtAACTGCATTAGAGCTGTAATAATCCACAAGCGGCTCCTGGCATTACCTATCGCACACATTGCCATTGGATGCACCCAGTAGAATTAGTAGAAATCCCATACAGCCATCCCACTGGAATGTGGGATGTAATGTACATCTTGATTACATTGATATAAATCCCTATTATGTTGTTTAATGACTTTAAATGTGTAATTATTTCTATAAAGCCTGCACTTTCTCATTCTGAACTTTTAACATGGCTAGGATATCAGGACAGGTGTGGTTTCATGACAATGACTACACCAGCTGCTGCTATACATATTGACAGCTCTAACATCTGCGTGCACCATTGCGCACatattgattttgtccccccacaccagacgcgatcaggactcgcagtttgaaatatcaaaacaaactctgaaccaattatattaatttggggacaaattaatgaaaagcattaaacatttatggcaatttagctaactTGCTTGcttttgctagctaatttgtcctgggatataaacattgggttgttattttacctgaaatgcacaagtcCTCTACTCCAACGATTAATACACAGATAAAACGGTAAACCAAAttagtttctagtcatctctcctccttccttcaggcttcttattattatttggactttatatgccggttggcaaccaactttaaggtgcattaccacaaccgactggagtgtggatctcagttcatctttcaatcacccatgttggtatatgctcctaaaaaccaatgaggagatgggagaggaaggacTTGCAGCACGTTGAGCATCACAAATACAACCAAGttatattttagcgcctggctacgcagatGCTTGCTGACttgtgcgagcagtgtgggtgcaatgattgaataacatgtatgtgtattTTGCAACGGACGCGATGCGTGCGGTATGGTCAGCATGTAATGCAGATAAATGGCCCATAAAAAAATCAATGAAAAGCTCTGTGTTTGTCCGGTAATGATTGTTACCGCTGATCGGATTGAATCCTGGCCCTTGTATAGGTTTGCTTTGTATTTTCTAAATTAACTTTTGGCTTTTTCGGGTGTGAATACAtttttgcttggaaatgtt

Function

NR:

description
solute carrier family 23 member 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036957475.1 True 3824 mRNA 0.47 12 85470939 85487796

Neighbor

gene id symbol gene type direction distance location
LOC110498041 LOC106561383 coding downstream 368154 85058747 ~ 85102785 (-)
LOC110498022 LOC106561385 coding downstream 560061 84596433 ~ 84910878 (-)
LOC110502226 LOC106573176 coding downstream 885532 84556466 ~ 84585407 (-)
tbxas1 LOC106561393 coding downstream 1295201 84030716 ~ 84175738 (-)
LOC110497954 LOC106561396 coding downstream 1658241 83809205 ~ 83812698 (-)
LOC110498116 LOC106561379 coding upstream 50587 85538383 ~ 85545472 (-)
LOC118936851 NA coding upstream 209624 85697420 ~ 85699798 (-)
LOC110502240 nup205 coding upstream 223743 85711539 ~ 85726478 (-)
dennd11 kiaa1147 coding upstream 246463 85734259 ~ 85748399 (-)
bcl2l13 LOC106561371 coding upstream 278292 85766088 ~ 85802952 (-)
G196784 NA non-coding downstream 18856 85451850 ~ 85452083 (-)
G196757 NA non-coding downstream 36784 85431738 ~ 85434155 (-)
G196750 NA non-coding downstream 42291 85428237 ~ 85428648 (-)
G196746 NA non-coding downstream 44123 85421946 ~ 85426816 (-)
G196725 NA non-coding downstream 46617 85389963 ~ 85424322 (-)
G197394 NA non-coding upstream 152742 85640538 ~ 85684526 (-)
G197424 NA non-coding upstream 176377 85664173 ~ 85745404 (-)
G197441 NA non-coding upstream 264645 85752441 ~ 85754218 (-)
G197498 slc25a18 non-coding upstream 343443 85831239 ~ 85843493 (-)
G197552 LOC106561360 non-coding upstream 539094 86026890 ~ 86043305 (-)
G195486 LOC106573171 other downstream 1488772 83977965 ~ 83982167 (-)
G195427 NA other downstream 1566488 83881540 ~ 83904451 (-)
G194491 NA other downstream 1854905 83615566 ~ 83616034 (-)
LOC110502187 NA other downstream 2247795 83219964 ~ 83223972 (-)
G197554 NA other upstream 472049 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 1415240 86903036 ~ 86903956 (-)
G198912 NA other upstream 1834343 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 4119041 89606837 ~ 89609890 (-)

Expression


Co-expression Network