LOC110498116 (LOC106561379)


Basic Information

Item Value
gene id LOC110498116
gene name LOC106561379
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85538383 ~ 85545472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574712.2
TGACTTCAGGGTAATACAATAAAGTGAAACTGTCCTGGCCaggtactgtaggctatataaaGTAATCGCCTCAAGTGATTATCACTGAAGTGAAAGAAGATAGTCATACAGAAACACTACTAGACAAGCACACAATCAGCTATGTCGCCAAACAACAAGTGGATAGGGAGGGGCCTGCATGCCAGCCTGTTGTACCTGGTTTTATTTGTGTGCCTGGTGCGCACCGCTACTCTGGACGAAGAAGATATTGAGattgatgatgaggaggaggaagacctggAGTATgaatacagtataaaacaagacAGACACACCTGTGGAAGCGGTCAAACTGGTCAGTATCCATTCTGTAAGGACAAGGACCAGGTCATTCACCACTACGTCGACACAAGGGATGAGTGTGGAGAGACAGACTTCAAGAGAGTGCGGGGGGAAATGCAGCTGATGATCCAGGACCGACGAAAGAAGATGAAGGAGATCGTACACTCTGCAAAACTCATCGAGAAAAatgtggagagggagaaagaggacacTTTGCTGTTCCTGACTGAAGTGACACGGCTCATTCAGAAGACCTATGTAGATGTCATTGAGGAGATCGAAAAGAAGCAGAAAGCAGCAACAACCATGGCTATAGAGCACATTCTAGAGCTAACACAGGAAATCTCTAAACTACAGGAGAGAAGCTCTGAActggagcagctctcacacaTTGAGGACCACCTTCACCTTCTCCAGATGTTCCCGTCCCTGTGTACCCCACCGGCCACCATTGACTGGTCTGAGGTCAGCATTCACAGTGATCCAAGTGTGGGGTCTATGAGGAGAGCTGTGAACAAGCTGAGAGAAGCACTCAATAGTGAAGAGAGCAGGCTGTCTGCAGCTGAGTTGGGAAGGATTAAGAAGTGTGCAGTGAATGTGACTCTGGACCCTGACACAGCACATCCGTACCTCATTGTCTCTGAAGACGGGAAACAAGTGAGAATTGGAGATCTCCGGCAAAATGTCACAGATGGCCCTGAAAGGTTTAATTCAGTCGTTAATGTCCTAGCAAAGGAGGGCTTCTCCTCAGGGAGATTCTACTATGAGGTGCAGGTGAAAGGTAAGACTAGGTTGGATTTAGGAGTGGCCATAGAGTCCATAAACAGGAAGAGTGGGGGCACCCTGAGCCCTGGCCATGGATACCTGGCTATATGTCTGAGGGATGGGGATAGGTATGTAGCTGCTGAAAGCCCTGCTATCCTCATCGCTCTTAGCCAGAAGCCCCAGAAGATAGGGGTTTATGTTGATTATGAACAAGGCCAGGTCTCCTTCTATGATGTGGATAACAGGTCTCATATCTACTCCTTCACTGATTATTCTTTCAATAAGAAACTCTATCCCTTCTTTAGCACTGGCACCGACGACGATGGTGAAAACTCAGCCCCATTAGTCATTACCCCAGTCAATCAACAACTGAGTATTCATTTCTTCACTTTTGAAAAAGCCTGAAAATTGATAAAATACAACTTACaatgtgtatatacactgagtatacaaaatattagcaacaccttcctaatattgagttgcagccaacacttttgccctcagaacagcctaaattcatCATAGACTCTACAAAGTGTGGAAAGCGTTcaacagggatgttggcccatgttgactccaatgattcccacagttgtgtcaagttggctggatgtcatttgggtagtggaccattcttgataa

Function

NR:

description
pyrin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574712.2 True 1731 mRNA 0.46 2 85538383 85545472

Neighbor

gene id symbol gene type direction distance location
LOC110502232 LOC106561380 coding downstream 50587 85470939 ~ 85487796 (-)
LOC110498041 LOC106561383 coding downstream 435598 85058747 ~ 85102785 (-)
LOC110498022 LOC106561385 coding downstream 627505 84596433 ~ 84910878 (-)
LOC110502226 LOC106573176 coding downstream 952976 84556466 ~ 84585407 (-)
tbxas1 LOC106561393 coding downstream 1362645 84030716 ~ 84175738 (-)
LOC118936851 NA coding upstream 151948 85697420 ~ 85699798 (-)
LOC110502240 nup205 coding upstream 166067 85711539 ~ 85726478 (-)
dennd11 kiaa1147 coding upstream 188787 85734259 ~ 85748399 (-)
bcl2l13 LOC106561371 coding upstream 220616 85766088 ~ 85802952 (-)
LOC110502245 NA coding upstream 258206 85803678 ~ 85804353 (-)
G197328 NA non-coding downstream 54758 85483027 ~ 85483625 (-)
G196784 NA non-coding downstream 86300 85451850 ~ 85452083 (-)
G196757 NA non-coding downstream 104228 85431738 ~ 85434155 (-)
G196750 NA non-coding downstream 109735 85428237 ~ 85428648 (-)
G196746 NA non-coding downstream 111567 85421946 ~ 85426816 (-)
G197394 NA non-coding upstream 95066 85640538 ~ 85684526 (-)
G197424 NA non-coding upstream 118701 85664173 ~ 85745404 (-)
G197441 NA non-coding upstream 206969 85752441 ~ 85754218 (-)
G197498 slc25a18 non-coding upstream 285767 85831239 ~ 85843493 (-)
G197552 LOC106561360 non-coding upstream 481418 86026890 ~ 86043305 (-)
G195486 LOC106573171 other downstream 1556216 83977965 ~ 83982167 (-)
G195427 NA other downstream 1633932 83881540 ~ 83904451 (-)
G194491 NA other downstream 1922349 83615566 ~ 83616034 (-)
LOC110502187 NA other downstream 2315239 83219964 ~ 83223972 (-)
G197554 NA other upstream 414373 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 1357564 86903036 ~ 86903956 (-)
G198912 NA other upstream 1776667 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 4061365 89606837 ~ 89609890 (-)

Expression


Co-expression Network